Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J18
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 87 7e-18
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 87 7e-18
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 87 7e-18
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 87 7e-18
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 80 1e-15
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 80 1e-15
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 80 2e-15
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 44 7e-05
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 44 9e-05
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 44 9e-05
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 44 9e-05
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 44 9e-05
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 44 9e-05
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 42 5e-04
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 41 6e-04
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 41 9e-04
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 41 9e-04
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 39 0.003
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 87.4 bits (207), Expect = 7e-18
Identities = 33/37 (89%), Positives = 37/37 (100%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP 216
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP 37
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 215 PTDKTIGGGDDSFNTFFS 268
P DKT+GGGDD+FNTFFS
Sbjct: 37 PGDKTVGGGDDAFNTFFS 54
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 282 GKHVPRAVSVDXEPTVV 332
GKHVPRAV VD EPTV+
Sbjct: 59 GKHVPRAVFVDLEPTVI 75
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 87.4 bits (207), Expect = 7e-18
Identities = 33/37 (89%), Positives = 37/37 (100%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP 216
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP 37
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 215 PTDKTIGGGDDSFNTFFS 268
P DKT+GGGDD+FNTFFS
Sbjct: 37 PGDKTVGGGDDAFNTFFS 54
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 282 GKHVPRAVSVDXEPTVV 332
GKHVPRAV VD EPTV+
Sbjct: 59 GKHVPRAVFVDLEPTVI 75
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 87.4 bits (207), Expect = 7e-18
Identities = 33/37 (89%), Positives = 37/37 (100%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP 216
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP 37
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +2
Query: 215 PTDKTIGGGDDSFNTFFS 268
P+DKT+GGGDD+FNTFFS
Sbjct: 37 PSDKTVGGGDDAFNTFFS 54
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 282 GKHVPRAVSVDXEPTVV 332
GKHVPRAV VD EPTV+
Sbjct: 59 GKHVPRAVFVDLEPTVI 75
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 87.4 bits (207), Expect = 7e-18
Identities = 33/37 (89%), Positives = 37/37 (100%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP 216
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP 37
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +2
Query: 215 PTDKTIGGGDDSFNTFFS 268
P+DKT+GGGDD+FNTFFS
Sbjct: 37 PSDKTVGGGDDAFNTFFS 54
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 282 GKHVPRAVSVDXEPTVV 332
GKHVPRAV VD EPTV+
Sbjct: 59 GKHVPRAVFVDLEPTVI 75
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 80.2 bits (189), Expect = 1e-15
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP 216
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMP 37
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 282 GKHVPRAVSVDXEPTVV 332
GKHVPRAV VD EPTV+
Sbjct: 59 GKHVPRAVFVDLEPTVI 75
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 215 PTDKTIGGGDDSFNTFFS 268
P+D T+G D+FNTFFS
Sbjct: 37 PSDTTVGVAHDAFNTFFS 54
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 80.2 bits (189), Expect = 1e-15
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP 216
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMP 37
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 282 GKHVPRAVSVDXEPTVV 332
GKHVPRAV VD EPTV+
Sbjct: 59 GKHVPRAVFVDLEPTVI 75
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 215 PTDKTIGGGDDSFNTFFS 268
P+D T+G D+FNTFFS
Sbjct: 37 PSDTTVGVAHDAFNTFFS 54
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 79.8 bits (188), Expect = 2e-15
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP 216
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMP 37
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 282 GKHVPRAVSVDXEPTVV 332
G+HVPRAV +D EPTV+
Sbjct: 59 GQHVPRAVFLDLEPTVI 75
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 215 PTDKTIGGGDDSFNTFFS 268
P+D T+G D+FNTFFS
Sbjct: 37 PSDSTVGACHDAFNTFFS 54
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPHRQD 228
MRE + + GQ G QIG+ WE+ C EHGI P G+ D
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSD 41
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 210
MRE + + GQ G QIG WE+ C EHGI P G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGR 35
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 210
MRE + + GQ G QIG WE+ C EHGI P G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGR 35
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +1
Query: 109 RECISVHVGQAGVQIGNACWELYCLEHGIQPDG 207
RE I++ VGQ G QIG W+ CLEHGI DG
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +1
Query: 109 RECISVHVGQAGVQIGNACWELYCLEHGIQPDG 207
RE I++ VGQ G QIG W+ CLEHGI DG
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 210
MRE + V GQ G QIG+ WE+ C EHG+ P G+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGR 35
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPHRQD 228
MRE + + GQ G QIG WE+ C EHGI G+ D
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGEND 41
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 210
MRE + + GQ G QIG WE+ C EHGI GQ
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQ 35
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 210
MRE + + GQ G QIG WE+ C EHGI GQ
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQ 35
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 210
MRE + + GQ G QIG+ WE+ C EHGI G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGR 35
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 210
MRE + + GQ G QIG+ WE+ LEHGI G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGR 35
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,966
Number of Sequences: 28952
Number of extensions: 179135
Number of successful extensions: 416
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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