Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J16
         (874 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat...    31   0.76 
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat...    31   0.76 
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat...    31   0.76 
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    30   2.3  
At2g30590.1 68415.m03727 WRKY family transcription factor              29   3.1  

>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -3

Query: 212 FRQFACRQTVYADLVQQVQGGTDH-CIRLQLCHA*HFITDKHNMST---NLSVIKNPRQH 45
           F  F      YAD++   +GG +H  I L + H  H    +H++     NL VI++  Q 
Sbjct: 209 FEDFILPTKKYADIIIP-RGGDNHVAIDLIVQHI-HTKLGQHDLCKIYPNLYVIQSTFQI 266

Query: 44  NGYHTVLEDSRT 9
            G HT++ DS+T
Sbjct: 267 RGMHTLIRDSKT 278


>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -3

Query: 212 FRQFACRQTVYADLVQQVQGGTDH-CIRLQLCHA*HFITDKHNMST---NLSVIKNPRQH 45
           F  F      YAD++   +GG +H  I L + H  H    +H++     NL VI++  Q 
Sbjct: 209 FEDFILPTKKYADIIIP-RGGDNHVAIDLIVQHI-HTKLGQHDLCKIYPNLYVIQSTFQI 266

Query: 44  NGYHTVLEDSRT 9
            G HT++ DS+T
Sbjct: 267 RGMHTLIRDSKT 278


>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -3

Query: 212 FRQFACRQTVYADLVQQVQGGTDH-CIRLQLCHA*HFITDKHNMST---NLSVIKNPRQH 45
           F  F      YAD++   +GG +H  I L + H  H    +H++     NL VI++  Q 
Sbjct: 209 FEDFILPTKKYADIIIP-RGGDNHVAIDLIVQHI-HTKLGQHDLCKIYPNLYVIQSTFQI 266

Query: 44  NGYHTVLEDSRT 9
            G HT++ DS+T
Sbjct: 267 RGMHTLIRDSKT 278


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 184 STPTSFNRSRAARITVFGCNFVMLDTLSLINI 89
           S P  FN +RA  +TVF C+   L +   +N+
Sbjct: 492 SLPLQFNTTRAITVTVFSCDKTALPSTITVNV 523


>At2g30590.1 68415.m03727 WRKY family transcription factor
          Length = 380

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 483 LGTRKLGPLEGYXRAAATCSSSTWCHCAGGRR 388
           L +++  PL+G    +  C SS+ CHCA  R+
Sbjct: 261 LHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRK 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,143
Number of Sequences: 28952
Number of extensions: 350120
Number of successful extensions: 751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)