Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J15
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 36 0.005
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 34 0.022
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 32 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 31 0.15
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 31 0.20
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 31 0.27
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 30 0.36
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 29 0.62
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 29 0.62
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.5
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 2.5
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 3.3
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 4.4
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 4.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 4.4
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 5.8
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 26 5.8
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 7.7
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 7.7
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 7.7
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 467 YSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDDAK 619
Y P EE + K E L +E + NE DE++ ++ +++E +D K
Sbjct: 348 YDPDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEK 398
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +2
Query: 449 SDGDDRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDDAKKHT 628
SD + S + S+ S ++ E +K+ + + S + EDD + D+ +S ++
Sbjct: 241 SDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSD 300
Query: 629 AETMEHDGD 655
+ + D D
Sbjct: 301 STSSSSDSD 309
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 31.9 bits (69), Expect = 0.12
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 449 SDGDDRYSPSLEEESTES-QPTKDE--QLAKEPXNRNESDEQEDDKAMDTQESTGPDDAK 619
SD DD S L ST S P K E A NR+ +DE+++D+ S DD +
Sbjct: 136 SDTDD--SVPLRAVSTVSLTPYKSELPSGASTTQNRSPNDEEDEDEDYKWWTSENIDDTQ 193
Query: 620 KHTAETMEHDG 652
K T T+EH+G
Sbjct: 194 KWT--TLEHNG 202
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 449 SDGDDRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDDAKK 622
++ D+ +SP E +DE K+ N++ +EQE ++ +E P++AK+
Sbjct: 371 AESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEEEQEQEQ---EEEQIDPEEAKR 425
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 31.5 bits (68), Expect = 0.15
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 452 DGDDRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDDAKKHTA 631
D D+ LE+ Q + + +E + +ESDE ED+ DDAKK
Sbjct: 217 DEDEEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRK 276
Query: 632 ETMEH 646
+ H
Sbjct: 277 KRAPH 281
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 449 SDGDDRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGP 607
SD S S EEES+ES+ +DE + N+ + +++ D A +++ P
Sbjct: 232 SDQSMETSESEEEESSESESDEDE----DEDNKGKIRKRKTDDAKKSRKKRAP 280
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 ESTESQPTKDEQLAKEP-XNRNESDEQEDDKAMDTQES 598
E E + ++DE+ A++ +R E +E+ED++A D ++S
Sbjct: 373 EDEELEDSEDEEFARQQLLSRKEEEEEEDEEASDFEDS 410
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 30.7 bits (66), Expect = 0.27
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 473 PSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQES 598
PS +E++ E Q K EP + + DE+EDDK +S
Sbjct: 13 PSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKS 54
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 30.3 bits (65), Expect = 0.36
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 452 DGDDRYSPSLEEESTESQPTKD--EQLAKEPXNRNESDEQ-EDDKAMDTQESTGPDDAKK 622
D + S EEE TES+ + ++ E + +ES+E+ E ++ D E +GP K
Sbjct: 80 DSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSGPSSFLK 139
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 29.5 bits (63), Expect = 0.62
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = +2
Query: 446 RSDGDDRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDDAKKH 625
+ D ++ S +++++ + + ++ E N NE+DEQE + ES D+
Sbjct: 37 KKDDKEKSSKKVQKKNKVIESLNEMEVEMEDENENENDEQEAIQYYINVESQDADETLHQ 96
Query: 626 TAETMEHD 649
A+ D
Sbjct: 97 EAQDSSED 104
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 29.5 bits (63), Expect = 0.62
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 452 DGDDRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDDAKKHTA 631
+ D+ + EEE E KDE K ++ + +E+E A+D +S K A
Sbjct: 176 NSDEEDAEQAEEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDSVNGKKRKTEPA 235
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/66 (22%), Positives = 27/66 (40%)
Frame = +2
Query: 476 SLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDDAKKHTAETMEHDGD 655
S EEE+ E + + E + + E+E D + +E G + + + +E GD
Sbjct: 198 SSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGKELAGESEEEGSNVDDVEDSGD 257
Query: 656 DXXAXN 673
N
Sbjct: 258 SSSDKN 263
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 473 PSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQ---ESTGPDDAKKHTAETME 643
P +EE E + + E+ E +E +E+EDD D + + G +D K E E
Sbjct: 172 PDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEE 231
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 536 PXNRNESDEQEDDKAMDTQESTGPDDAKKHTAETMEHDGD 655
P + ++DE+E+++ D E ++ + E E DGD
Sbjct: 168 PPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGD 207
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 485 EESTESQPTKDEQLAKEPXNRNES----DEQEDDKAMDTQESTGPDDAKK 622
E++ P +E L++EP +NE DE++ D + +E+ +++K
Sbjct: 27 EKAAPQPPEVEEVLSEEPYQKNEKVVVLDEEDADAFLHPEEAEAKKESEK 76
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 452 DGDDRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDDAKKHTA 631
+ D+ Y S EE + DE+ +E + + S +ED+ +D+ + KK T
Sbjct: 132 ESDEDYDLSPTEEDLVETVSGDEESEEESESEDNSASEEDE--LDSAPAKKAQVKKKRTK 189
Query: 632 ETMEHD 649
+ E +
Sbjct: 190 DESEQE 195
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 461 DRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDDAKKHTAETM 640
D Y P+L E PT++ +L E N D DD D + + +++E++
Sbjct: 615 DEYDPNLIYYDNE--PTEENRLVFEDTNNTFIDTDSDDSNADESQFLEYANDSPNSSESL 672
Query: 641 E 643
E
Sbjct: 673 E 673
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 300 NIELSGSAVPVFASSAFFNLSTKAGLFPFVSNPRAPNSD 184
+ +S S + FAS +F +T + F S P PNS+
Sbjct: 206 SFRISNSHISPFASGSFSPFATSSPNFLSTSTPAPPNSN 244
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 458 DDRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQE 595
DD SL+EE +ES K ++ K+ ++++ E DD +++ E
Sbjct: 131 DDMDDLSLDEEESESS-EKSKKKKKKSKSKDDGSEALDDGDIESSE 175
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 170 VVDLRSELGALGLDTKGNKPALVERLK---KALEAK 268
V ++R L LGL T GNK L R K K LE K
Sbjct: 25 VEEIRIALQELGLSTNGNKEKLKRRWKFREKRLEEK 60
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 458 DDRYSPSLEEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTGPDD 613
+D Y S EEE E ++++EP + D D + ++ + + P +
Sbjct: 161 EDAYFESFEEEEEEEMYEYATEVSEEPEDTRAIDVVLDHRLIEGHDGSTPSE 212
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +2
Query: 527 AKEPXNRNESDEQEDDK-----AMDTQESTGPDDAKKHTAE 634
A EP N S+EQED K A+D Q S A T E
Sbjct: 738 ANEPVQENTSEEQEDTKMQPVDAVDEQPSENNQTAADATNE 778
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 482 EEESTESQPTKDEQLAKEPXNRNESDEQEDDKAMDTQESTG 604
E++S +S P+K L + N E D++ DD ++ G
Sbjct: 526 EDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSNNKTEG 566
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,988
Number of Sequences: 5004
Number of extensions: 47074
Number of successful extensions: 246
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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