Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J14
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398     32   0.67 
04_04_0063 - 22441549-22442961                                         30   2.0  
04_01_0154 - 1775693-1775942,1776834-1777588                           30   2.0  
03_06_0316 + 33091194-33091370,33091451-33092155                       29   3.6  
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012     29   4.7  
12_02_0328 - 17578190-17578240,17579307-17579379,17579715-175797...    29   6.2  
03_04_0174 - 18044516-18046327                                         29   6.2  

>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
          Length = 187

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 29/75 (38%), Positives = 37/75 (49%)
 Frame = -3

Query: 522 ITRKSLLNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI 343
           +T K+ L  F G      + L KR   V+T  SA   S +S A  AAAA G  T  + + 
Sbjct: 84  LTNKAALQAF-GVAPEQGLLLAKRCG-VTTDASACAKSASSSATAAAAAAGAGTAGSTAA 141

Query: 342 RRVSAAKGNAASRKA 298
              SA+ GNAAS  A
Sbjct: 142 S--SASTGNAASTAA 154


>04_04_0063 - 22441549-22442961
          Length = 470

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -3

Query: 438 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTTNSN 265
           +T  +AT  S  + A+TA+ A         S+R VS+AKG   AAS + T   +  T S+
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRTPSS 369

Query: 264 SSVSAAD 244
              S  +
Sbjct: 370 RRYSIGE 376


>04_01_0154 - 1775693-1775942,1776834-1777588
          Length = 334

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 390 TAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTNSNSSVSAADRGRA 232
           TAA   G +T    S RR    +GN A R ++ G++      ++V     GRA
Sbjct: 126 TAARQDGGATRRNSSRRRRPRWRGNVARRSSSAGTQRRLTGQTAVGDGGEGRA 178


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 441 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 298
           ++T ++ATE  + +E   AAA +  +T       + + AK  AA RKA
Sbjct: 1   MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48


>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
          Length = 296

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -3

Query: 456 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 298
           KRST+ S+  S+ +      A  AAA    STT T +    S+A   AA+  A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199


>12_02_0328 -
           17578190-17578240,17579307-17579379,17579715-17579765,
           17579863-17580332
          Length = 214

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 484 PPPEPVEQRLPRYPCCGSTPETLQDHLHQGPNSSHS 591
           PPP P EQ   + P   + P    D  HQ P++S S
Sbjct: 20  PPPPPQEQPQQQQPELITAPPPRDDVAHQEPSTSSS 55


>03_04_0174 - 18044516-18046327
          Length = 603

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 466 HIYVHVPPPEPVEQRLPRYPCC-GST--PETLQDHLHQGPNSSHSYCPHNS 609
           H + H   P P +Q    YP   GST  P +   H H   + SHS+  +NS
Sbjct: 14  HHHQHAASPSPPDQPHKSYPSSRGSTSSPSSHHTHNHTYYHHSHSHYNNNS 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,095
Number of Sequences: 37544
Number of extensions: 272499
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)