Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J14
         (854 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_55249| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)                     29   4.8  
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 559 DLVMFLGWSHSRDNEEVFAQLVLGEVREH 473
           D+V+ +GW H R+    + Q+ LGE  EH
Sbjct: 81  DIVLRVGWLHRRNENCAYKQVRLGEASEH 109


>SB_55249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 559 DLVMFLGWSHSRDNEEVFAQLVLGEVREH 473
           D+V+ +GW H R+    + Q+ LGE  EH
Sbjct: 192 DIVLRVGWLHRRNENCAYKQVRLGEASEH 220


>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +1

Query: 19  LSHRNISKVGVVLIGY*INYHRV--SSKRISL----VSSKHKMRAFVVLACVAMAYGRPE 180
           +SH  +  + + +IGY  +YHRV   S  I L    +SS H++  F+ L       G P 
Sbjct: 637 VSHFLLLGIPLRIIGYPTSYHRVVFLSSGIPLPIIGLSSYHRVSHFLSLGIPLPIIGIPL 696

Query: 181 PPVGYSYSAPR 213
           P +GY  S  R
Sbjct: 697 PIIGYPTSYHR 707


>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = -3

Query: 477 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 307
           N D+F  +++ + + R S T+S+I   +    +A    TT++++I   +   A++G    
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552

Query: 306 RKAT*GSRMTTNSNSSVS 253
           +K T      T+S +S S
Sbjct: 553 KKNTSRPSSVTSSLTSSS 570


>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
          Length = 2478

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = -3

Query: 501  NWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAA----AKGESTTETESIRRV 334
            N    +Y N+D   YKR T    +     +S+ SE+Q +       + E T     + +V
Sbjct: 1263 NQLMEQYRNVDPDEYKRMTEEKKQFQQHVASLKSESQRSKTLLENVRNELTKTKAELTKV 1322

Query: 333  SAAKGNAASRKAT*GSRMTTNSNSSVSAADRGRAE 229
             A   N  + +    S+M    + S S   + +AE
Sbjct: 1323 QAELLNVKNDQQKAQSQMEAIKSQSTSVEGKNQAE 1357


>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 395 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLV 520
           A +V  +   D++V  L  LL  NTSMF+   QN +SK  ++
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVI 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,661,306
Number of Sequences: 59808
Number of extensions: 284977
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)