Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J14
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23230.1 68414.m02906 expressed protein                             34   0.10 
At5g28120.1 68418.m03396 hypothetical protein                          30   1.7  
At3g30816.1 68416.m03949 hypothetical protein                          30   2.3  
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    30   2.3  
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    30   2.3  
At4g05300.1 68417.m00803 hypothetical protein                          29   3.9  
At5g28110.1 68418.m03395 hypothetical protein                          28   9.1  
At4g21900.1 68417.m03166 MATE efflux family protein similar to r...    28   9.1  
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops...    28   9.1  

>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -3

Query: 483 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 331
           Y+N D FL      + + +SA E+S++   Q AAA  G S T ++S+  VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172


>At5g28120.1 68418.m03396 hypothetical protein
          Length = 506

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 456 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 304
           ++S R STRISA+E +  S        KGES T+    RR++  K +  +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391


>At3g30816.1 68416.m03949 hypothetical protein
          Length = 342

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 456 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 301
           K+S R STRISA+E +  S        KGEST    T  I      +GN  +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232


>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
 Frame = +1

Query: 451 PLVQKHIYVHVPPPEPVEQRLPRYPC-----CGSTPETLQDHLHQGPN---SSHSYC--P 600
           P++Q   Y+H PPP+P  Q  P YP       G+   + +       N   SS SY   P
Sbjct: 337 PMLQ--YYMHPPPPQPPHQDRPFYPSMDPQRMGAVSSSKESGSSTSDNRGASSSSYTMPP 394

Query: 601 HNSYP 615
           H  YP
Sbjct: 395 HGHYP 399


>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain
          Length = 938

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 453  RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 301
            +S R STRISA+E +  S        KGEST     E+ RR    KG++   +
Sbjct: 843  KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895


>At4g05300.1 68417.m00803 hypothetical protein
          Length = 387

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -3

Query: 456 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRKAT*GSR 283
           ++S R STRISA+E +  S        KGEST     E+ +R    KG++   +     R
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQRE-SLR 359

Query: 282 MTTNSNSSVSAADRGRAE 229
                 + V  A + +A+
Sbjct: 360 WEPMDKTDVGPASKPKAD 377


>At5g28110.1 68418.m03395 hypothetical protein
          Length = 493

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 456 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 304
           ++S R S RISA+E +  S        KGES T+    RR++  K +  +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391


>At4g21900.1 68417.m03166 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           MatE
          Length = 1094

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -3

Query: 441 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 295
           VS+ IS  ESS+T+ A+  AAAKG+     + ++ + A  G +  R  T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623


>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
           thaliana, EMBL:AC007020
          Length = 745

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = -3

Query: 504 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 331
           LN ++G    ID+    RST + T+ S   S   SEA      + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,363
Number of Sequences: 28952
Number of extensions: 201751
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)