Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J12
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   4.2  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 120 TYCAGYRDGTSVCNGDSGGGM 182
           ++C    +  +VC+GDSGGG+
Sbjct: 258 SFCTAEEEDKNVCSGDSGGGL 278


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = +1

Query: 238 LLSSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDHFTRSSLKNHYFHCFIT 417
           + S  TT+    + +S+  ++   LD   AL G +R VA + D  TR SLKN     F+T
Sbjct: 32  IFSLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLT 87

Query: 418 YSVGRKRCAVDNIGGRTVF 474
           Y+      +  NI  R+ F
Sbjct: 88  YTPVILNASTTNIVTRSKF 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,237,579
Number of Sequences: 27780
Number of extensions: 421623
Number of successful extensions: 1226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)