Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J12
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.74 
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro...    30   1.7  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.0  
At1g51040.1 68414.m05737 phosphatidylinositol 4-kinase, putative...    29   3.0  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.9  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   5.2  
At1g74400.1 68414.m08619 pentatricopeptide (PPR) repeat-containi...    29   5.2  
At3g62370.1 68416.m07006 expressed protein                             28   9.1  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 483 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSREMISHLCYTSHV 337
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
           protein similar to ubiquitin-conjugating enzyme
           GB:3319990 from [Mus musculus]; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 1163

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +3

Query: 24  TEELSLVEMPVVDTETCIRSYSEFFVRFTSEYTYCAGYRDGTSVCNGDSGGGMVI*LVTR 203
           +E + +  +  +  E  +RS+  FFVR       C  Y+DG  V + D GG   +   TR
Sbjct: 753 SENVFVFSLKTMHFEEFVRSH--FFVRSHDIVKACNAYKDGAPVGSIDKGG---VKKQTR 807

Query: 204 MNGLTRFPLSLST 242
             G  +F +++++
Sbjct: 808 QRGSLKFRINVTS 820


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 623 LSEDRNLAWSKRAKAGLIQLFSTHRDCESTAYRSFXIK 736
           LS  R   W  RAK  L+QL  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g51040.1 68414.m05737 phosphatidylinositol 4-kinase, putative
           similar to phosphatidylinositol 4-kinase alpha [Daucus
           carota] GI:3452273; contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 525

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 725 FXIKSFXQEVPKKFHRXYW 781
           F +  F Q VPK FHR +W
Sbjct: 70  FVVLDFLQTVPKSFHRSFW 88


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 353 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 243
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 586 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 470
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At1g74400.1 68414.m08619 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 domain of unknown
           function
          Length = 462

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 176 RNGHLISDAHEWINEIPTVP 235
           R+GHL  DAHE+IN++P  P
Sbjct: 324 RSGHL-KDAHEFINQMPIKP 342


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 571 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 476
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,497,597
Number of Sequences: 28952
Number of extensions: 407423
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)