Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J11
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    55   1e-08
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    28   1.9  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   4.4  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    26   5.9  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   7.8  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
 Frame = +3

Query: 111 PHIMLTLXKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSSKF 287
           P     + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L + F
Sbjct: 3   PPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLETSF 60

Query: 288 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLXRHFCP 416
             K  GLT ++ W T N L + + + ++ A GL + +   F P
Sbjct: 61  NDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSP 103



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
 Frame = +2

Query: 545 GWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKLDCGV 721
           G+LAG    +D QK   S     +GY +   ++     N    F  S Y +VS  ++ G 
Sbjct: 144 GFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEAGG 203

Query: 722 SMKWTAGS-ADTL-FGVGAKYALDQXASLHAKXXNKSXSXL 838
           ++ W A S A+ +   + +KYALD+   +  K  +   + L
Sbjct: 204 NVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATL 244


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 563 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 703
           H Q     A F+K++  LGY+    AL++  DN   +  +   K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 201 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 350
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 248 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 141
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +1

Query: 199 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 291
           P   L +  P   +  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,406
Number of Sequences: 5004
Number of extensions: 71010
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)