Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J11
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 41 0.001
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 35 0.094
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 33 0.38
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 31 1.5
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 2.7
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 30 2.7
04_03_0250 - 13477020-13477550,13477572-13477933,13478026-134786... 29 4.7
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 4.7
12_01_0767 - 6956758-6957138,6957491-6957581,6957796-6957861,695... 29 6.2
11_03_0088 - 9780355-9780558,9780636-9780725,9783905-9784073,978... 28 8.2
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 557 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVSDKLDCGVSMKW 733
G FDT F+K N L + + D ++N G S Y KVS G +
Sbjct: 296 GTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVSKTSAVGAELAH 355
Query: 734 TAGSADTLFGVGAKYALDQXASLHAKXXN 820
+ S + G ++ALD+ ++ A+ N
Sbjct: 356 SFSSNENTLTFGTQHALDELTTVKARFNN 384
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 34.7 bits (76), Expect = 0.094
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +2
Query: 578 TQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADTL 757
T + +S+ F+ Y+ DF + N +GG+ Q V+ L G W +
Sbjct: 173 TNEPHYSQGMFSFDYKGKDFRSQFQLGNNAFYGGNYIQSVTKNLSLGTEAFWLGQQRKSG 232
Query: 758 FGVGAKY 778
G A+Y
Sbjct: 233 VGFVARY 239
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 32.7 bits (71), Expect = 0.38
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +2
Query: 557 GVHTQFDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGSIYQKVS--DKLDCGVS 724
GV FDT + F+K N AL + D +LH N ++G S Y V G
Sbjct: 142 GVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIASYYHLVKHHSNTAVGAE 200
Query: 725 MKWTAGSADTLFGVGAKYALDQXASLHAKXXN 820
+ + ++ G++++LD ++ A+ N
Sbjct: 201 LSHSFSRNESTLIFGSQHSLDPHTTVKARFNN 232
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Frame = +2
Query: 542 RGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF-ALHTNVDNGKDFGGSIYQKVSDKLDCG 718
+G G FDT KF+K + A+G D+ A D G S + DK
Sbjct: 175 QGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVKVSGVYHLDDKQKSS 234
Query: 719 VSMKWT--AGSADTLFGVGAKYALDQXASLHAKXXN 820
V + T + + VG Y +D ++ A+ N
Sbjct: 235 VVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNN 270
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 180 FKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 341
F LDL S + G++F SG+ S + V L+ + A+KDY T+ N D T
Sbjct: 277 FHLDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFREAIKDYSTPSTKTLNRDLT 332
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = +2
Query: 554 AGVHTQFDTQKAKFSKNNFALGYQSGDF-ALHTNVDNGKDFGGSIYQKVSDKLDCGVSMK 730
AG FD+ A +K N + Y DF A D G+ S ++ V+ +
Sbjct: 854 AGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGETLKASYIHTFNETNGATVAAE 913
Query: 731 WT--AGSADTLFGVGAKYALDQXASLHAKXXN 820
T + + F +G+ +A+D L + N
Sbjct: 914 VTHKLKTKENYFTIGSSHAIDSSTLLKTRFSN 945
>04_03_0250 -
13477020-13477550,13477572-13477933,13478026-13478682,
13480142-13480232
Length = 546
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 675 PKSLP-LSTFVWRAKSPDW*PRAKLFLENFAFCVSNW-VCTPASQPLVV*YCCN 520
P + P L+ F W ++ + P A+LF F C S V TPA + C N
Sbjct: 72 PSAFPKLAVFAWMCRTCGFVPTAELFATLFTACASTKDVQTPAGPRKTIFGCVN 125
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 686 YQKVSDKLDCGVSMKWTAGSADTLFGVG 769
+QKV D+LDCG+ + T G + +G
Sbjct: 469 WQKVCDRLDCGLEINNTVGGMRKILSLG 496
>12_01_0767 -
6956758-6957138,6957491-6957581,6957796-6957861,
6958079-6958194
Length = 217
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 694 GI*QAGLRRQHEVDG-GFGRHIIRSWSEVRAGPXR 795
G+ QAG RR+ V G GFG W E R G R
Sbjct: 167 GLAQAGHRREAVVVGDGFGTEAAPHWGEARGGRER 201
>11_03_0088 -
9780355-9780558,9780636-9780725,9783905-9784073,
9784230-9784638,9784725-9785562
Length = 569
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 675 PKSLP-LSTFVWRAKSPDW*PRAKLFLENFAFCVSNW-VCTPASQPLVV*YCCN 520
P + P L+ F W ++ + P A+LF F C S V TPA + C N
Sbjct: 102 PLAFPKLALFAWMCRTCGFAPTAELFAALFTACASTKDVQTPAGPRKTIFSCVN 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,760,600
Number of Sequences: 37544
Number of extensions: 502975
Number of successful extensions: 1343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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