Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J11
(848 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) 113 2e-25
SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041) 40 0.003
SB_40708| Best HMM Match : SRCR (HMM E-Value=0) 29 3.6
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39) 29 6.3
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
Length = 379
Score = 113 bits (271), Expect = 2e-25
Identities = 52/111 (46%), Positives = 75/111 (67%)
Frame = +3
Query: 129 LXKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGL 308
L K+A DVF KGY FG K+DLKT +++GVEF + +S ++GKVFGSL +K+ DYG+
Sbjct: 106 LGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYKYSDYGI 165
Query: 309 TFTEKWNTDNTLATDITIQDKIAAGLKVTLXRHFCPTDWN*NWKIEDLIHQ 461
+ +EKW TDN L+++IT++D+IA GLK+ F P + KI+ Q
Sbjct: 166 SLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQ 216
Score = 92.3 bits (219), Expect = 5e-19
Identities = 41/101 (40%), Positives = 59/101 (58%)
Frame = +2
Query: 545 GWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVS 724
GW AG +DT K+K NNF+LGY++ DF +H+ V++ F GSIY ++S L+
Sbjct: 244 GWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAVNDASKFTGSIYHQISKNLEVAAQ 303
Query: 725 MKWTAGSADTLFGVGAKYALDQXASLHAKXXNKSXSXLVTT 847
+ W GS++T F G KY +D+ +L AK N S L T
Sbjct: 304 LNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGLAYT 344
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +1
Query: 406 TFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQG 546
TFAP TG K+ K+KT++ D + ++D D AGP V +AV+ Y+G
Sbjct: 198 TFAPNTGKKSAKIKTAYKQDYLHATGDVDFDFAGPTVQGSAVVGYEG 244
>SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)
Length = 187
Score = 39.9 bits (89), Expect = 0.003
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 692 KVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQXASLHAKXXNKSXSXLVTT 847
++S L+ + W GS++T F G KY +D+ +L AK N S L T
Sbjct: 101 EISKNLEVAAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGLAYT 152
>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1976
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = -3
Query: 669 SLPLSTFVWRAKSPDW*-PRAKLFLENFAFCVSNWVCTPASQPLVV*YCCNVYNWTGQVQ 493
S P + W+ PR +F NF + N V + Q Y C NW G
Sbjct: 1762 SYPTANITWKRNGAVLKGPRYNVFTNNFTLAIYNAVFEDSGQ-----YECTAQNWLGTAS 1816
Query: 492 IQVSV 478
VSV
Sbjct: 1817 ANVSV 1821
>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 856
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 409 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGL 549
+AP K +L T F +DT AVN N ++ + +NY G+
Sbjct: 172 YAPCNKPKLKRLLTRFVSDTGAVNQNFQTAMSEKFPVSSVKMNYLGI 218
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.7 bits (61), Expect = 6.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 632 DFALHTNVDNGKDFGGSIYQKV 697
++ +H ++ G+D+GGS YQ+V
Sbjct: 394 EYGIHLSLTVGRDYGGSYYQQV 415
>SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)
Length = 632
Score = 28.7 bits (61), Expect = 6.3
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = -1
Query: 281 GGKAAKNLSAFLVGGDSAGEFNT-RLA--LGLQVEFENTKVIALAEDIIGLLXQGQHNMG 111
GG A L +LVGGD +FN RL L L+ + KV + I + + NM
Sbjct: 389 GGGAGGELRYYLVGGDPQSQFNVDRLTGELSLKKPLDYEKVASYRLRIRAVQKTWRPNMP 448
Query: 110 E-PCLCFINSQIGIISQRIPRKLARATNLCTAHHK 9
E P + + I+ PR L T+ H+
Sbjct: 449 ELPAEATVLITVTDINDNAPRFAIPREPLVTSIHQ 483
>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 228 SGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 371
SG+ +ESG+ SL+ A L T+ NTD T TD T Q+K
Sbjct: 65 SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111
>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 972
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -2
Query: 403 LXRVTLRPAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLV 224
L R + ++ S ANVL V+ SV +KP LEE L W +
Sbjct: 861 LVRPLCNEMPLCNYTYSSAANVLEVYELSVGIKPSEVEILLEELKSSGALLEWPQD---A 917
Query: 223 NSTPDSLL 200
++TP++++
Sbjct: 918 STTPETVI 925
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,673,279
Number of Sequences: 59808
Number of extensions: 576313
Number of successful extensions: 1438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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