Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J11
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34...    36   0.026
At5g37610.1 68418.m04530 hypothetical protein                          31   0.97 
At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.9  
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot...    28   9.0  

>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = +2

Query: 557 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNV-DNGKDFGGSIYQKVSDKLD--CGVSM 727
           G    FDT+   F+K N  L +   D      V D G     S Y  V+   +   G  +
Sbjct: 143 GTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEV 202

Query: 728 KWTAGSADTLFGVGAKYALDQXASLHAK 811
                S D+   VG +++LD   S+ A+
Sbjct: 203 SHKLSSKDSTITVGTQHSLDPLTSVKAR 230


>At5g37610.1 68418.m04530 hypothetical protein
          Length = 163

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
 Frame = +2

Query: 548 WLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKLDCGVS 724
           W  G     D      +K N  L   + D     ++D     F  S YQ++  K  CG  
Sbjct: 31  WRFGFELTLDLVNRIITKANTVLSLITEDTTTTFSIDKKASLFTASYYQRLHSKTVCGAE 90

Query: 725 MKWTAGSADTLFGVGAKY 778
            K+        F +G ++
Sbjct: 91  AKYILSDKSNSFSIGKRH 108


>At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to desacetoxyvindoline
           4-hydroxylase [Catharanthus roseus][GI:1916643],
           flavonol synthase 1 [SP|Q96330]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 361

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 382 PAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVN-STPD 209
           PA +  ++V     V  +    +K  P  +   LEERL   F     E IP+++ S PD
Sbjct: 13  PAEVTDFVVYKGNGVKGLSETGIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPD 71


>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
           similar to serine-type carboxypeptidase (SP:P55748)
           [Hordeum vulgare]
          Length = 479

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 311 SQAIVFHCKFGGKAAKNLSAFLVGGDSAGEFNTRLAL 201
           S+AIV H +   K + NL  ++VG     +F+ RL L
Sbjct: 196 SEAIVKHNQGSDKNSINLKGYMVGNGLMDDFHDRLGL 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,120
Number of Sequences: 28952
Number of extensions: 393519
Number of successful extensions: 1025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)