Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J09
(900 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB7B4D Cluster: PREDICTED: similar to Dicer-1 CG... 298 1e-79
UniRef50_Q17KP3 Cluster: Dicer-1; n=2; Aedes aegypti|Rep: Dicer-... 295 7e-79
UniRef50_Q9VCU9 Cluster: Endoribonuclease Dcr-1; n=18; Sophophor... 293 4e-78
UniRef50_UPI00015B5D4A Cluster: PREDICTED: similar to dicer-1; n... 283 4e-75
UniRef50_UPI0000D5738B Cluster: PREDICTED: similar to CG4792-PA;... 275 1e-72
UniRef50_Q86MA9 Cluster: Dicer-1; n=5; Coelomata|Rep: Dicer-1 - ... 261 2e-68
UniRef50_UPI0000586635 Cluster: PREDICTED: similar to Dicer prot... 226 7e-58
UniRef50_Q9UPY3 Cluster: Endoribonuclease Dicer; n=50; Eumetazoa... 221 2e-56
UniRef50_P34529 Cluster: Endoribonuclease dcr-1; n=2; Caenorhabd... 197 3e-49
UniRef50_Q174T8 Cluster: Dicer-1; n=3; Culicidae|Rep: Dicer-1 - ... 178 1e-43
UniRef50_UPI0000DB7B59 Cluster: PREDICTED: similar to Dicer-1 CG... 177 4e-43
UniRef50_UPI00015B633C Cluster: PREDICTED: similar to dicer-1; n... 173 7e-42
UniRef50_UPI0000D5572D Cluster: PREDICTED: similar to CG6493-PA;... 153 8e-36
UniRef50_Q9SP32 Cluster: Endoribonuclease Dicer homolog; n=8; Em... 139 8e-32
UniRef50_Q9M9P8 Cluster: T17B22.1 protein; n=13; Eukaryota|Rep: ... 137 3e-31
UniRef50_A7SIA4 Cluster: Predicted protein; n=1; Nematostella ve... 137 4e-31
UniRef50_Q2HTA7 Cluster: Helicase, C-terminal; Argonaute and Dic... 132 2e-29
UniRef50_A7PXV4 Cluster: Chromosome chr15 scaffold_37, whole gen... 130 5e-29
UniRef50_Q0IWV3 Cluster: Os10g0485600 protein; n=7; Eukaryota|Re... 126 8e-28
UniRef50_Q95YG3 Cluster: Double-strand-specific ribonuclease; n=... 126 1e-27
UniRef50_Q10HL3 Cluster: Type III restriction enzyme, res subuni... 122 2e-26
UniRef50_A7PV34 Cluster: Chromosome chr4 scaffold_32, whole geno... 122 2e-26
UniRef50_A3A0R6 Cluster: Putative uncharacterized protein; n=4; ... 122 2e-26
UniRef50_A7P4V9 Cluster: Chromosome chr4 scaffold_6, whole genom... 121 2e-26
UniRef50_Q0E5R5 Cluster: Putative dicer-like protein; n=1; Mucor... 109 1e-22
UniRef50_Q01HF5 Cluster: OSIGBa0157K09-H0214G12.2 protein; n=4; ... 106 7e-22
UniRef50_A7LFZ6 Cluster: Dicer-like protein; n=2; Oryza sativa (... 106 7e-22
UniRef50_Q9LXW7 Cluster: Putative uncharacterized protein T15B3_... 104 4e-21
UniRef50_Q3SA53 Cluster: Dicer-like 4; n=2; core eudicotyledons|... 103 8e-21
UniRef50_A7PX71 Cluster: Chromosome chr12 scaffold_36, whole gen... 99 2e-19
UniRef50_O23395 Cluster: UFD1 like protein; n=8; Magnoliophyta|R... 91 4e-17
UniRef50_Q1DKI1 Cluster: Dicer-like protein 1 [Includes: Endorib... 89 1e-16
UniRef50_A4RKC3 Cluster: Dicer-like protein 1 [Includes: Endorib... 88 2e-16
UniRef50_Q9LTQ0 Cluster: Similarity to CAF protein; n=3; core eu... 88 3e-16
UniRef50_Q09884 Cluster: Protein Dicer (Cell cycle control prote... 87 4e-16
UniRef50_P84634 Cluster: Dicer-like protein 4; n=1; Arabidopsis ... 86 1e-15
UniRef50_Q69KJ0 Cluster: CAF protein-like; n=2; Oryza sativa|Rep... 86 1e-15
UniRef50_Q6BCJ7 Cluster: Dicer-related RNase III protein Dcl1p; ... 86 1e-15
UniRef50_A2Y2L5 Cluster: Putative uncharacterized protein; n=2; ... 85 2e-15
UniRef50_A2RAF3 Cluster: Dicer-like protein 1 [Includes: Endorib... 83 9e-15
UniRef50_A6QZ52 Cluster: Predicted protein; n=1; Ajellomyces cap... 81 4e-14
UniRef50_A6SBX3 Cluster: Putative uncharacterized protein; n=1; ... 74 4e-12
UniRef50_A1DE13 Cluster: Dicer-like protein 1 [Includes: Endorib... 74 4e-12
UniRef50_UPI000023D196 Cluster: hypothetical protein FG04408.1; ... 73 1e-11
UniRef50_Q9FKF0 Cluster: Emb|CAB88120.1; n=1; Arabidopsis thalia... 73 1e-11
UniRef50_A6LNE7 Cluster: Ribonuclease III; n=1; Thermosipho mela... 72 2e-11
UniRef50_UPI00015BD56E Cluster: UPI00015BD56E related cluster; n... 64 5e-11
UniRef50_Q7S8J7 Cluster: Dicer-like protein 1 [Includes: Endorib... 71 5e-11
UniRef50_Q6BCJ9 Cluster: Dicer-related RNase III protein Dcr2p; ... 69 2e-10
UniRef50_Q2VF19 Cluster: Dicer-like protein 1 [Includes: Endorib... 69 2e-10
UniRef50_UPI0000E0E146 Cluster: ribonuclease III; n=1; alpha pro... 69 2e-10
UniRef50_O67082 Cluster: Ribonuclease 3; n=1; Aquifex aeolicus|R... 69 2e-10
UniRef50_A1C9M6 Cluster: Dicer-like protein 2 [Includes: Endorib... 69 2e-10
UniRef50_Q2VF18 Cluster: Dicer-like protein 2 [Includes: Endorib... 68 3e-10
UniRef50_Q88WK0 Cluster: Ribonuclease 3; n=5; Lactobacillales|Re... 61 3e-10
UniRef50_A1APX0 Cluster: Ribonuclease III; n=1; Pelobacter propi... 67 5e-10
UniRef50_Q0UL22 Cluster: Dicer-like protein 2 [Includes: Endorib... 67 5e-10
UniRef50_A2QX45 Cluster: Dicer-like protein 2-2 [Includes: Endor... 67 7e-10
UniRef50_Q0UI93 Cluster: Dicer-like protein 1 [Includes: Endorib... 67 7e-10
UniRef50_Q92JB0 Cluster: Ribonuclease 3; n=8; Rickettsia|Rep: Ri... 66 2e-09
UniRef50_A4XJW5 Cluster: Ribonuclease III; n=1; Caldicellulosiru... 64 4e-09
UniRef50_A6R2T0 Cluster: Predicted protein; n=1; Ajellomyces cap... 64 4e-09
UniRef50_Q5F9X7 Cluster: Ribonuclease 3; n=5; Betaproteobacteria... 64 4e-09
UniRef50_A2WR94 Cluster: Putative uncharacterized protein; n=3; ... 64 5e-09
UniRef50_Q5NER3 Cluster: Ribonuclease 3; n=11; Francisella tular... 64 5e-09
UniRef50_A5CEW8 Cluster: Ribonuclease III; n=1; Orientia tsutsug... 63 8e-09
UniRef50_P0C5H7 Cluster: Dicer-like protein 2 [Includes: Endorib... 63 8e-09
UniRef50_A7EYF3 Cluster: Putative uncharacterized protein; n=1; ... 63 1e-08
UniRef50_Q0F3I4 Cluster: Ribonuclease III; n=1; Mariprofundus fe... 61 3e-08
UniRef50_Q67PF5 Cluster: Ribonuclease 3; n=1; Symbiobacterium th... 61 3e-08
UniRef50_Q608M7 Cluster: Ribonuclease 3; n=121; Proteobacteria|R... 61 4e-08
UniRef50_Q2U0L3 Cluster: DsRNA-specific nuclease Dicer and relat... 60 6e-08
UniRef50_Q1DW80 Cluster: Dicer-like protein 2 [Includes: Endorib... 60 6e-08
UniRef50_Q8EW40 Cluster: Ribonuclease III; n=1; Mycoplasma penet... 51 8e-08
UniRef50_A0LGM1 Cluster: Ribonuclease III; n=1; Syntrophobacter ... 60 1e-07
UniRef50_Q8RGX3 Cluster: Ribonuclease 3; n=3; Fusobacterium nucl... 60 1e-07
UniRef50_Q9KA05 Cluster: Ribonuclease 3; n=38; Bacilli|Rep: Ribo... 60 1e-07
UniRef50_Q3SD86 Cluster: Dicer-like ribonuclease with helicase a... 59 1e-07
UniRef50_A6SDY7 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_Q6MLR5 Cluster: Ribonuclease 3; n=1; Bdellovibrio bacte... 59 1e-07
UniRef50_Q2GNP6 Cluster: Putative uncharacterized protein; n=1; ... 59 2e-07
UniRef50_Q7VIA9 Cluster: Ribonuclease 3; n=27; Epsilonproteobact... 59 2e-07
UniRef50_Q7WD32 Cluster: Ribonuclease 3; n=62; Proteobacteria|Re... 59 2e-07
UniRef50_Q3AC58 Cluster: Ribonuclease 3; n=1; Carboxydothermus h... 58 2e-07
UniRef50_Q7UGZ7 Cluster: Ribonuclease 3; n=3; Planctomycetaceae|... 58 3e-07
UniRef50_Q98R47 Cluster: RIBONUCLEASE III; n=1; Mycoplasma pulmo... 58 4e-07
UniRef50_Q3E502 Cluster: Ribonuclease III, bacterial; n=2; Chlor... 58 4e-07
UniRef50_Q7SCC1 Cluster: Dicer-like protein 2 [Includes: Endorib... 57 5e-07
UniRef50_Q8KAN7 Cluster: Ribonuclease 3; n=9; Chlorobiaceae|Rep:... 48 7e-07
UniRef50_Q1Q4S0 Cluster: Similar to ribonuclease III; n=1; Candi... 57 7e-07
UniRef50_Q0YHA5 Cluster: Ribonuclease III; n=1; Geobacter sp. FR... 57 7e-07
UniRef50_Q8XJN8 Cluster: Ribonuclease 3; n=20; Bacteria|Rep: Rib... 57 7e-07
UniRef50_Q5L6E3 Cluster: Ribonuclease 3; n=8; Chlamydiaceae|Rep:... 57 7e-07
UniRef50_A4GHU1 Cluster: Ribonuclease III; n=1; uncultured marin... 43 9e-07
UniRef50_UPI00015B6129 Cluster: PREDICTED: similar to ribonuclea... 56 9e-07
UniRef50_Q2GCL4 Cluster: Ribonuclease III; n=1; Neorickettsia se... 56 9e-07
UniRef50_A7B5M4 Cluster: Putative uncharacterized protein; n=1; ... 56 9e-07
UniRef50_A1AWQ6 Cluster: Ribonuclease III; n=2; sulfur-oxidizing... 56 9e-07
UniRef50_Q72C44 Cluster: Ribonuclease 3; n=4; Desulfovibrionacea... 56 9e-07
UniRef50_A6C1C3 Cluster: Ribonuclease III; n=1; Planctomyces mar... 56 1e-06
UniRef50_Q74AX1 Cluster: Ribonuclease 3; n=4; Geobacter|Rep: Rib... 56 1e-06
UniRef50_A5EV51 Cluster: Ribonuclease III; n=1; Dichelobacter no... 56 2e-06
UniRef50_A6PN64 Cluster: Ribonuclease III; n=1; Victivallis vade... 55 2e-06
UniRef50_A4J683 Cluster: Ribonuclease III; n=1; Desulfotomaculum... 55 2e-06
UniRef50_Q5FJJ7 Cluster: Ribonuclease 3; n=8; Lactobacillus|Rep:... 55 2e-06
UniRef50_Q97IA4 Cluster: Ribonuclease 3; n=3; Clostridium|Rep: R... 55 2e-06
UniRef50_Q1JXG8 Cluster: Ribonuclease III; n=1; Desulfuromonas a... 55 3e-06
UniRef50_A0L633 Cluster: Ribonuclease III; n=1; Magnetococcus sp... 55 3e-06
UniRef50_A1WT17 Cluster: Ribonuclease III; n=2; Gammaproteobacte... 54 4e-06
UniRef50_A1HN82 Cluster: Ribonuclease III; n=4; Clostridia|Rep: ... 54 4e-06
UniRef50_A0NL28 Cluster: Ribonuclease III; n=3; Leuconostocaceae... 54 4e-06
UniRef50_P74368 Cluster: Ribonuclease 3; n=1; Synechocystis sp. ... 54 4e-06
UniRef50_Q6ANV0 Cluster: Ribonuclease 3; n=1; Desulfotalea psych... 54 4e-06
UniRef50_O01326 Cluster: Ribonuclease 3; n=2; Caenorhabditis|Rep... 54 4e-06
UniRef50_Q2H0G2 Cluster: Dicer-like protein 1 [Includes: Endorib... 54 4e-06
UniRef50_A5V230 Cluster: Ribonuclease III; n=2; Roseiflexus|Rep:... 54 5e-06
UniRef50_Q6LX27 Cluster: Ribonuclease III family:Double-stranded... 54 5e-06
UniRef50_Q7KNF1 Cluster: Ribonuclease; n=8; Coelomata|Rep: Ribon... 54 7e-06
UniRef50_A6DSV3 Cluster: Ribonuclease III; n=1; Lentisphaera ara... 53 9e-06
UniRef50_Q9PB98 Cluster: Ribonuclease 3; n=14; Gammaproteobacter... 53 1e-05
UniRef50_Q2S2W4 Cluster: Ribonuclease III; n=1; Salinibacter rub... 42 1e-05
UniRef50_Q6SFI8 Cluster: Ribonuclease III; n=2; Bacteria|Rep: Ri... 52 2e-05
UniRef50_A5UJK3 Cluster: Ribonuclease III (DsRNA-specific), Rnc;... 52 2e-05
UniRef50_Q9Z5U2 Cluster: Ribonuclease 3; n=7; Sphingomonadales|R... 52 2e-05
UniRef50_P51837 Cluster: Ribonuclease 3; n=5; Gammaproteobacteri... 52 2e-05
UniRef50_Q5P9U8 Cluster: Ribonuclease 3; n=2; Anaplasma|Rep: Rib... 52 2e-05
UniRef50_A4RHU9 Cluster: Dicer-like protein 2 [Includes: Endorib... 52 2e-05
UniRef50_Q98514 Cluster: Putative protein A464R; n=6; Chloroviru... 52 2e-05
UniRef50_Q6YPW7 Cluster: Ribonuclease 3; n=3; Candidatus Phytopl... 39 2e-05
UniRef50_Q0LPI7 Cluster: Ribonuclease III; n=1; Herpetosiphon au... 51 3e-05
UniRef50_A3VSG4 Cluster: Ribonuclease III; n=1; Parvularcula ber... 51 3e-05
UniRef50_A1WMW1 Cluster: Ribonuclease III; n=1; Verminephrobacte... 51 3e-05
UniRef50_A0WD16 Cluster: Ribonuclease III; n=1; Geobacter lovley... 51 3e-05
UniRef50_Q5C1G8 Cluster: SJCHGC08817 protein; n=1; Schistosoma j... 51 3e-05
UniRef50_Q97QG6 Cluster: Ribonuclease 3; n=46; Lactobacillales|R... 51 3e-05
UniRef50_A3LS79 Cluster: Predicted protein; n=1; Pichia stipitis... 48 4e-05
UniRef50_A0YTE9 Cluster: Ribonuclease III; n=1; Lyngbya sp. PCC ... 51 5e-05
UniRef50_Q556G5 Cluster: Putative uncharacterized protein; n=2; ... 51 5e-05
UniRef50_O83787 Cluster: Ribonuclease 3; n=1; Treponema pallidum... 40 5e-05
UniRef50_Q67B98 Cluster: Ribonuclease III-like protein; n=2; Mur... 50 6e-05
UniRef50_A1U2V5 Cluster: Ribonuclease III; n=5; Bacteria|Rep: Ri... 50 6e-05
UniRef50_Q53844 Cluster: Ribonuclease 3; n=2; Spiroplasma citri|... 50 6e-05
UniRef50_Q9NRR4 Cluster: Ribonuclease 3; n=59; Eumetazoa|Rep: Ri... 50 6e-05
UniRef50_A6GP51 Cluster: Ribonuclease III; n=1; Limnobacter sp. ... 42 7e-05
UniRef50_A4E6T0 Cluster: Putative uncharacterized protein; n=1; ... 50 8e-05
UniRef50_Q7VRR0 Cluster: Ribonuclease 3; n=4; Gammaproteobacteri... 50 8e-05
UniRef50_Q8Z023 Cluster: Ribonuclease 3; n=6; Cyanobacteria|Rep:... 50 8e-05
UniRef50_Q5GTI3 Cluster: Ribonuclease 3; n=26; Rickettsiales|Rep... 50 1e-04
UniRef50_Q82JT9 Cluster: Ribonuclease 3; n=37; Actinobacteria (c... 50 1e-04
UniRef50_Q4FUV6 Cluster: Ribonuclease 3; n=6; Gammaproteobacteri... 50 1e-04
UniRef50_A0DYG6 Cluster: Chromosome undetermined scaffold_7, who... 49 1e-04
UniRef50_A5E7T6 Cluster: Putative uncharacterized protein; n=1; ... 49 1e-04
UniRef50_Q2LVR4 Cluster: Ribonuclease III; n=1; Syntrophus acidi... 49 2e-04
UniRef50_Q1YS28 Cluster: Ribonuclease III; n=1; gamma proteobact... 49 2e-04
UniRef50_A4GK15 Cluster: Ribonuclease III; n=1; uncultured marin... 49 2e-04
UniRef50_A0NMB9 Cluster: Ribonuclease III; n=1; Stappia aggregat... 49 2e-04
UniRef50_Q6BX76 Cluster: Similar to CA1420|CaRNT1 Candida albica... 49 2e-04
UniRef50_Q3ZXY9 Cluster: Ribonuclease 3; n=3; Dehalococcoides|Re... 49 2e-04
UniRef50_A1I8J4 Cluster: Ribonuclease III; n=1; Candidatus Desul... 44 2e-04
UniRef50_Q3VWC5 Cluster: Ribonuclease III; n=1; Prosthecochloris... 48 2e-04
UniRef50_Q190G5 Cluster: Ribonuclease III; n=3; Peptococcaceae|R... 48 2e-04
UniRef50_A3EQH6 Cluster: DsRNA-specific ribonuclease; n=1; Lepto... 48 2e-04
UniRef50_Q3SE71 Cluster: Ribonuclease with two RNaseIII domains;... 48 2e-04
UniRef50_Q6N6C1 Cluster: Ribonuclease 3; n=14; Rhizobiales|Rep: ... 48 2e-04
UniRef50_Q3A4Q8 Cluster: Ribonuclease 3; n=1; Pelobacter carbino... 48 2e-04
UniRef50_Q4A589 Cluster: Ribonuclease 3; n=1; Mycoplasma synovia... 48 2e-04
UniRef50_Q6F1N5 Cluster: Ribonuclease 3; n=4; Mollicutes|Rep: Ri... 48 2e-04
UniRef50_A2ST26 Cluster: Ribonuclease III; n=1; Methanocorpuscul... 48 3e-04
UniRef50_Q1IJU6 Cluster: Ribonuclease III; n=1; Acidobacteria ba... 48 4e-04
UniRef50_A4A3U5 Cluster: Ribonuclease III; n=1; Congregibacter l... 48 4e-04
UniRef50_Q55FS1 Cluster: Putative RNase III; n=1; Dictyostelium ... 48 4e-04
UniRef50_Q6FQ28 Cluster: Candida glabrata strain CBS138 chromoso... 48 4e-04
UniRef50_Q1NXA7 Cluster: Ribonuclease III; n=2; delta proteobact... 47 6e-04
UniRef50_Q648X5 Cluster: Ribonuclease III; n=3; environmental sa... 47 6e-04
UniRef50_Q1FET5 Cluster: Ribonuclease III; n=1; Clostridium phyt... 47 8e-04
UniRef50_Q0AYW0 Cluster: Ribonuclease III; n=1; Syntrophomonas w... 47 8e-04
UniRef50_A4R7T3 Cluster: Putative uncharacterized protein; n=1; ... 47 8e-04
UniRef50_Q6MEK1 Cluster: Ribonuclease 3; n=1; Candidatus Protoch... 47 8e-04
UniRef50_Q31HP3 Cluster: Ribonuclease III; n=2; Gammaproteobacte... 46 0.001
UniRef50_A6RQB2 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_A5DC21 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_O51648 Cluster: Ribonuclease 3; n=3; Borrelia burgdorfe... 46 0.001
UniRef50_Q6A7R5 Cluster: Ribonuclease III; n=2; Actinomycetales|... 46 0.001
UniRef50_Q9KPB2 Cluster: Ribonuclease 3; n=22; Gammaproteobacter... 46 0.001
UniRef50_Q9PQT8 Cluster: Ribonuclease 3; n=1; Ureaplasma parvum|... 46 0.001
UniRef50_A5IYM8 Cluster: Ribonuclease III; n=1; Mycoplasma agala... 46 0.002
UniRef50_Q3SE73 Cluster: Ribonuclease with two RNaseIII domains;... 46 0.002
UniRef50_Q6LMS2 Cluster: Ribonuclease 3; n=19; Gammaproteobacter... 46 0.002
UniRef50_Q4A7X2 Cluster: Ribonuclease III; n=3; Mycoplasma hyopn... 45 0.002
UniRef50_A2SDH3 Cluster: Ribonuclease III; n=1; Methylibium petr... 45 0.002
UniRef50_A0ZZX0 Cluster: Ribonuclease III; n=2; Bifidobacterium ... 45 0.002
UniRef50_Q5UQT7 Cluster: Probable ribonuclease 3; n=1; Acanthamo... 45 0.002
UniRef50_A6R9C5 Cluster: Predicted protein; n=1; Ajellomyces cap... 43 0.003
UniRef50_Q73NX5 Cluster: Ribonuclease 3; n=1; Treponema denticol... 38 0.003
UniRef50_A6EDW5 Cluster: Ribonuclease III; n=1; Pedobacter sp. B... 45 0.003
UniRef50_Q0C3T9 Cluster: Ribonuclease III; n=1; Hyphomonas neptu... 44 0.004
UniRef50_A7HCB5 Cluster: Ribonuclease III; n=3; Cystobacterineae... 44 0.004
UniRef50_A3EU88 Cluster: DsRNA-specific ribonuclease; n=1; Lepto... 44 0.004
UniRef50_Q8G7H1 Cluster: Ribonuclease 3; n=2; Bifidobacterium lo... 44 0.004
UniRef50_Q5LNK5 Cluster: Ribonuclease 3; n=28; Alphaproteobacter... 44 0.005
UniRef50_Q4FLS9 Cluster: Ribonuclease 3; n=2; Candidatus Pelagib... 44 0.005
UniRef50_Q5A694 Cluster: Probable ribonuclease III; n=2; Candida... 44 0.007
UniRef50_Q57E81 Cluster: Ribonuclease 3; n=19; Rhizobiales|Rep: ... 44 0.007
UniRef50_A1ZI45 Cluster: Ribonuclease III; n=2; Flexibacteraceae... 43 0.009
UniRef50_A4U1G9 Cluster: Ribonuclease III; n=2; Magnetospirillum... 43 0.012
UniRef50_Q6KHN3 Cluster: Ribonuclease 3; n=1; Mycoplasma mobile|... 43 0.012
UniRef50_Q9A805 Cluster: Ribonuclease 3; n=4; Alphaproteobacteri... 43 0.012
UniRef50_A7CV23 Cluster: Ribonuclease III; n=1; Opitutaceae bact... 42 0.016
UniRef50_A7I515 Cluster: Ribonuclease III; n=1; Candidatus Metha... 42 0.016
UniRef50_Q8CPI1 Cluster: Ribonuclease 3; n=16; Staphylococcus|Re... 42 0.016
UniRef50_Q06VS3 Cluster: Ribonuclease III; n=1; Trichoplusia ni ... 42 0.021
UniRef50_Q26GJ2 Cluster: Ribonuclease III (Rnase III), double-st... 42 0.021
UniRef50_Q5KKA7 Cluster: Putative uncharacterized protein; n=2; ... 42 0.021
UniRef50_A1CZL8 Cluster: RNase3 domain protein; n=3; Trichocomac... 42 0.021
UniRef50_Q83I82 Cluster: Ribonuclease 3; n=3; Tropheryma whipple... 42 0.021
UniRef50_Q4AEV8 Cluster: Ribonuclease III; n=1; Chlorobium phaeo... 42 0.028
UniRef50_A7LVV6 Cluster: Putative uncharacterized protein; n=1; ... 42 0.028
UniRef50_A5ZF82 Cluster: Putative uncharacterized protein; n=2; ... 42 0.028
UniRef50_A3I0H3 Cluster: Putative ribonuclease III; n=1; Algorip... 42 0.028
UniRef50_Q9P6D6 Cluster: Related to Ribonuclease III; n=2; Sorda... 42 0.028
UniRef50_Q027L3 Cluster: Ribonuclease III; n=1; Solibacter usita... 41 0.037
UniRef50_Q5KKA8 Cluster: Putative uncharacterized protein; n=2; ... 41 0.037
UniRef50_A7I5W5 Cluster: Ribonuclease III; n=1; Candidatus Metha... 41 0.037
UniRef50_Q31MP4 Cluster: Ribonuclease III; n=2; Synechococcus el... 41 0.049
UniRef50_O32367 Cluster: Ribonuclease III; n=1; Campylobacter je... 41 0.049
UniRef50_A7DEA6 Cluster: Ribonuclease III; n=3; Alphaproteobacte... 41 0.049
UniRef50_Q5AQL5 Cluster: ER lumen protein retaining receptor; n=... 41 0.049
UniRef50_Q9NG98 Cluster: DNA topoisomerase 3-alpha; n=6; Eukaryo... 41 0.049
UniRef50_Q02555 Cluster: Ribonuclease 3; n=2; Saccharomyces cere... 41 0.049
UniRef50_A4MAM8 Cluster: Ribonuclease III; n=1; Petrotoga mobili... 40 0.065
UniRef50_Q9X0I6 Cluster: Ribonuclease 3; n=3; Thermotogaceae|Rep... 40 0.065
UniRef50_Q8A2E8 Cluster: Ribonuclease 3; n=6; Bacteroidales|Rep:... 40 0.065
UniRef50_Q7NAZ2 Cluster: Rnc; n=1; Mycoplasma gallisepticum|Rep:... 40 0.086
UniRef50_Q2RJX2 Cluster: Ribonuclease III; n=1; Moorella thermoa... 40 0.086
UniRef50_Q6CC90 Cluster: Similarities with sp|Q02555 Saccharomyc... 40 0.086
UniRef50_Q820I0 Cluster: Ribonuclease 3; n=4; Proteobacteria|Rep... 40 0.086
UniRef50_Q6NGH3 Cluster: Ribonuclease 3; n=6; Corynebacterium|Re... 40 0.086
UniRef50_Q7NH89 Cluster: Ribonuclease III; n=3; Cyanobacteria|Re... 39 0.15
UniRef50_Q7R2M2 Cluster: GLP_546_48378_50642; n=2; Giardia intes... 39 0.15
UniRef50_Q2U9V4 Cluster: Predicted protein; n=3; Eurotiomycetida... 39 0.15
UniRef50_Q95JC9 Cluster: Basic proline-rich protein precursor [C... 39 0.15
UniRef50_A7BCY7 Cluster: Putative uncharacterized protein; n=1; ... 39 0.20
UniRef50_Q6P0D5 Cluster: WW domain-binding protein 11; n=7; Eute... 39 0.20
UniRef50_UPI0000D56EFA Cluster: PREDICTED: similar to Protein ca... 38 0.26
UniRef50_Q6FJM4 Cluster: Candida glabrata strain CBS138 chromoso... 38 0.26
UniRef50_P75233 Cluster: Ribonuclease 3; n=3; Mycoplasma|Rep: Ri... 38 0.26
UniRef50_Q0BTG2 Cluster: Ribonuclease III; n=4; Rhodospirillales... 38 0.35
UniRef50_Q8EXX3 Cluster: Ribonuclease 3; n=4; Leptospira|Rep: Ri... 38 0.35
UniRef50_Q1GTU3 Cluster: Ribonuclease III; n=1; Sphingopyxis ala... 38 0.46
UniRef50_A3CSF0 Cluster: Ribonuclease III; n=1; Methanoculleus m... 38 0.46
UniRef50_Q8IMM6 Cluster: CG5514-PB, isoform B; n=3; Drosophila m... 37 0.61
UniRef50_Q54EI2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.61
UniRef50_A7RNZ0 Cluster: Predicted protein; n=1; Nematostella ve... 37 0.61
UniRef50_A2DC30 Cluster: Formin Homology 2 Domain containing pro... 37 0.61
UniRef50_Q6CIQ4 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 37 0.61
UniRef50_A7TI15 Cluster: Putative uncharacterized protein; n=1; ... 37 0.61
UniRef50_P22192 Cluster: Double-strand-specific pac1 ribonucleas... 37 0.61
UniRef50_Q9FLQ7 Cluster: Gb|AAD23008.1; n=1; Arabidopsis thalian... 37 0.81
UniRef50_P77455 Cluster: Protein maoC; n=23; cellular organisms|... 37 0.81
UniRef50_A5Z824 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q0UFS5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_A7F817 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_UPI0000F30461 Cluster: Formin-2.; n=2; Bos taurus|Rep: ... 36 1.4
UniRef50_Q4A2Z7 Cluster: Putative membrane protein precursor; n=... 36 1.4
UniRef50_Q6AHS6 Cluster: Protease-1 (PRT1) protein, putative; n=... 36 1.4
UniRef50_P49251 Cluster: Protein maoC; n=1; Klebsiella aerogenes... 36 1.4
UniRef50_Q68DA7 Cluster: Formin-1; n=14; Theria|Rep: Formin-1 - ... 36 1.4
UniRef50_Q4T4L4 Cluster: Chromosome undetermined SCAF9593, whole... 36 1.9
UniRef50_O86637 Cluster: Putative uncharacterized protein SCO571... 36 1.9
UniRef50_Q1D5X9 Cluster: Ribonuclease III; n=1; Myxococcus xanth... 36 1.9
UniRef50_A2F201 Cluster: RNase3 domain containing protein; n=1; ... 36 1.9
UniRef50_Q9KLM4 Cluster: Sensor protein; n=16; Gammaproteobacter... 35 2.5
UniRef50_Q8YPT4 Cluster: Ribonuclease III; n=8; Cyanobacteria|Re... 35 2.5
UniRef50_A6GBZ2 Cluster: Putative uncharacterized protein; n=1; ... 35 2.5
UniRef50_Q1XG54 Cluster: Similarity to ribonuclease III; n=1; Cr... 35 2.5
UniRef50_A7SLQ1 Cluster: Predicted protein; n=2; Nematostella ve... 35 2.5
UniRef50_Q55637 Cluster: Uncharacterized protein slr0346; n=1; S... 35 2.5
UniRef50_O60610 Cluster: Protein diaphanous homolog 1; n=43; Eut... 35 2.5
UniRef50_UPI000049A0E6 Cluster: diaphanous protein; n=1; Entamoe... 35 3.3
UniRef50_Q7MU11 Cluster: Ribonuclease III; n=1; Porphyromonas gi... 35 3.3
UniRef50_A6G995 Cluster: Ribonuclease III; n=1; Plesiocystis pac... 35 3.3
UniRef50_A1BDD9 Cluster: Glycosyl transferase, group 1; n=1; Chl... 35 3.3
UniRef50_Q6Z4P0 Cluster: Putative uncharacterized protein OSJNBa... 35 3.3
UniRef50_A2F502 Cluster: Formin Homology 2 Domain containing pro... 35 3.3
UniRef50_P78977 Cluster: Cell wall protein precursor; n=2; Yarro... 35 3.3
UniRef50_Q9FPQ6 Cluster: Vegetative cell wall protein gp1 precur... 35 3.3
UniRef50_UPI00004D7E7F Cluster: CDNA FLJ45135 fis, clone BRAWH30... 34 4.3
UniRef50_A5GQ81 Cluster: Ribonuclease III; n=1; Synechococcus sp... 34 4.3
UniRef50_Q00X46 Cluster: Chromosome 13 contig 1, DNA sequence; n... 34 4.3
UniRef50_Q2UTX6 Cluster: Predicted protein; n=1; Aspergillus ory... 34 4.3
UniRef50_Q9JL04 Cluster: Formin-2; n=4; Murinae|Rep: Formin-2 - ... 34 4.3
UniRef50_UPI0000EBDA4B Cluster: PREDICTED: hypothetical protein;... 34 5.7
UniRef50_UPI0000E4896A Cluster: PREDICTED: similar to CG33556-PA... 34 5.7
UniRef50_Q3HTK5 Cluster: Pherophorin-C2 protein precursor; n=8; ... 34 5.7
UniRef50_Q7RBF3 Cluster: Translation initiation factor IF-2; n=6... 34 5.7
UniRef50_Q2F5I0 Cluster: Rhoptry-associated protein 1; n=2; Plas... 34 5.7
UniRef50_A1XCP2 Cluster: Vasa-like protein; n=2; Coelomata|Rep: ... 34 5.7
UniRef50_Q6BWX1 Cluster: Similar to CA5411|IPF1558 Candida albic... 34 5.7
UniRef50_Q5KEY8 Cluster: Expressed protein; n=1; Filobasidiella ... 34 5.7
UniRef50_A3LUF0 Cluster: Predicted protein; n=1; Pichia stipitis... 34 5.7
UniRef50_A3CRH2 Cluster: Ribonuclease III; n=2; Methanomicrobial... 34 5.7
UniRef50_Q05319 Cluster: Serine proteinase stubble (EC 3.4.21.-)... 34 5.7
UniRef50_Q9NZ56 Cluster: Formin-2; n=13; Eumetazoa|Rep: Formin-2... 34 5.7
UniRef50_UPI00015B541C Cluster: PREDICTED: hypothetical protein;... 33 7.5
UniRef50_UPI0000DA2BF2 Cluster: PREDICTED: similar to WW domain ... 33 7.5
UniRef50_Q65553 Cluster: UL36; n=5; Varicellovirus|Rep: UL36 - B... 33 7.5
UniRef50_Q81ZN4 Cluster: SMC protein; n=2; Enterococcus|Rep: SMC... 33 7.5
UniRef50_Q3B0H4 Cluster: Ribonuclease III; n=2; Synechococcus|Re... 33 7.5
UniRef50_Q1AW81 Cluster: Ribonuclease III; n=1; Rubrobacter xyla... 33 7.5
UniRef50_A7IG30 Cluster: Extensin family protein precursor; n=1;... 33 7.5
UniRef50_Q6YWH3 Cluster: Putative uncharacterized protein OSJNBa... 33 7.5
UniRef50_A2E5R8 Cluster: Putative uncharacterized protein; n=1; ... 33 7.5
UniRef50_Q7SFQ1 Cluster: Predicted protein; n=1; Neurospora cras... 33 7.5
UniRef50_Q2W1I3 Cluster: Submaxillary gland androgen regulated p... 33 9.9
UniRef50_Q1J2D7 Cluster: Multisubunit Na+/H+ antiporter MnhE sub... 33 9.9
UniRef50_Q0LTW4 Cluster: Peptidase M56, BlaR1 precursor; n=1; Ca... 33 9.9
UniRef50_Q2QTS9 Cluster: Pentatricopeptide, putative, expressed;... 33 9.9
UniRef50_A0BLV2 Cluster: Chromosome undetermined scaffold_115, w... 33 9.9
UniRef50_Q5EU90 Cluster: Trans-2-enoyl-CoA reductase, mitochondr... 33 9.9
>UniRef50_UPI0000DB7B4D Cluster: PREDICTED: similar to Dicer-1
CG4792-PA; n=1; Apis mellifera|Rep: PREDICTED: similar to
Dicer-1 CG4792-PA - Apis mellifera
Length = 1838
Score = 298 bits (732), Expect = 1e-79
Identities = 145/211 (68%), Positives = 172/211 (81%)
Frame = +2
Query: 17 PRSPLLRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQR 196
P++PLLRY+ DPE EL+ M+ GYE+LE+ + Y+F D S LLQA THAS+ N LTDCYQR
Sbjct: 1559 PQNPLLRYIVDPEEELKLMLDGYEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQR 1618
Query: 197 LEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSP 376
LEFLGDA+LDYLITRHLYED R HSPGALTDLRSALVNNTIFA+LA R GFHKYFRH+SP
Sbjct: 1619 LEFLGDAVLDYLITRHLYEDTRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSP 1678
Query: 377 GLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
GL+ V+ ++V+IQEENGHSISEE+YLI E+E E+AEDVEVPKALGD+FES+AGAI+LDSG
Sbjct: 1679 GLSIVINRFVRIQEENGHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSG 1738
Query: 557 MSLGRRVEVVRAA*LGRELEAFXRGPXPXPL 649
MSL V V A + E+E F P+
Sbjct: 1739 MSLD-AVWSVYYAIMKNEIEQFSTNVPKSPI 1768
Score = 37.5 bits (83), Expect = 0.46
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = +2
Query: 128 SLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
SL+LQA+T ++ + + + RLE +GD+ L Y IT +LY G L+ LRS V
Sbjct: 1304 SLILQALTMSNANDGINLE---RLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1360
Query: 308 NN 313
+N
Sbjct: 1361 SN 1362
>UniRef50_Q17KP3 Cluster: Dicer-1; n=2; Aedes aegypti|Rep: Dicer-1 -
Aedes aegypti (Yellowfever mosquito)
Length = 2193
Score = 295 bits (725), Expect = 7e-79
Identities = 142/211 (67%), Positives = 168/211 (79%)
Frame = +2
Query: 17 PRSPLLRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQR 196
P+SPLL Y +P+ LE ++ GY E L Y+F DRS LLQAMTHAS+ N LTDCYQR
Sbjct: 1915 PKSPLLMYAPNPQQTLEHLLDGYSAFEDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQR 1974
Query: 197 LEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSP 376
LEFLGDA+LDYLITRHLYED R HSPGALTDLRSALVNNTIFA+LA RH FHKYFRH+SP
Sbjct: 1975 LEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSP 2034
Query: 377 GLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
GLN+V+ ++V+IQ++NGH ISEE+YLI EDE ++AEDVEVPKALGD+FESVAGAIFLDS
Sbjct: 2035 GLNDVIDRFVRIQQDNGHIISEEYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSN 2094
Query: 557 MSLGRRVEVVRAA*LGRELEAFXRGPXPXPL 649
MSL +V R+ +G E+E F P+
Sbjct: 2095 MSLDAVWKVYRSM-MGPEIEQFSNSVPKSPI 2124
Score = 37.9 bits (84), Expect = 0.35
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +2
Query: 128 SLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
S++LQA+T ++ + + + RLE +GD+ L Y IT +LY G L+ LRS V
Sbjct: 1655 SIILQALTMSNANDGINLE---RLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1711
Query: 308 NNTIFATLAAR 340
+N L R
Sbjct: 1712 SNLNLYRLGRR 1722
>UniRef50_Q9VCU9 Cluster: Endoribonuclease Dcr-1; n=18;
Sophophora|Rep: Endoribonuclease Dcr-1 - Drosophila
melanogaster (Fruit fly)
Length = 2249
Score = 293 bits (719), Expect = 4e-78
Identities = 134/183 (73%), Positives = 160/183 (87%)
Frame = +2
Query: 17 PRSPLLRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQR 196
PRSPLL + + EL++++SG+E+ E L Y+FRDRS LLQAMTHAS+ N LTDCYQR
Sbjct: 1971 PRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQR 2030
Query: 197 LEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSP 376
LEFLGDA+LDYLITRHLYED R HSPGALTDLRSALVNNTIFA+LA RHGFHK+FRH+SP
Sbjct: 2031 LEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSP 2090
Query: 377 GLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
GLN+V+ ++V+IQ+ENGH ISEE+YL+ E+E + AEDVEVPKALGD+FES+AGAIFLDS
Sbjct: 2091 GLNDVIDRFVRIQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSN 2150
Query: 557 MSL 565
MSL
Sbjct: 2151 MSL 2153
Score = 38.3 bits (85), Expect = 0.26
Identities = 26/77 (33%), Positives = 39/77 (50%)
Frame = +2
Query: 128 SLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
S++LQA+T ++ + + + RLE +GD+ L Y IT +LY G L+ LRS V
Sbjct: 1724 SIILQALTMSNANDGINLE---RLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780
Query: 308 NNTIFATLAARHGFHKY 358
N L R +Y
Sbjct: 1781 ANLNLYRLGRRKRLGEY 1797
>UniRef50_UPI00015B5D4A Cluster: PREDICTED: similar to dicer-1; n=1;
Nasonia vitripennis|Rep: PREDICTED: similar to dicer-1 -
Nasonia vitripennis
Length = 1917
Score = 283 bits (694), Expect = 4e-75
Identities = 144/214 (67%), Positives = 165/214 (77%), Gaps = 3/214 (1%)
Frame = +2
Query: 17 PRSPLLRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQR 196
P SPL V PE ELE M+ GY+ LER + Y FR+RS LLQA THAS+ N LTDCYQR
Sbjct: 1635 PPSPLFYNVPQPEIELEIMLDGYDSLERSIGYTFRNRSYLLQAFTHASYQPNRLTDCYQR 1694
Query: 197 LEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSP 376
LEFLGDA+LDYLITRHLYED R HSPGALTDLRSALVNNTIFA+LA R GFHKYFRH+SP
Sbjct: 1695 LEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSP 1754
Query: 377 GLNEVLKKYVKIQEENGHSISEEHYLIHE---DEMEQAEDVEVPKALGDLFESVAGAIFL 547
GLN V+ ++V+IQEENGHSISEE+YLI E +E E+AEDVEVPKALGD+FES+AGAI+L
Sbjct: 1755 GLNTVIDRFVRIQEENGHSISEEYYLIGEREFEEAEEAEDVEVPKALGDVFESLAGAIYL 1814
Query: 548 DSGMSLGRRVEVVRAA*LGRELEAFXRGPXPXPL 649
DS MSL V V + E+E F P+
Sbjct: 1815 DSNMSLD-AVWAVYFEIMKSEIEQFSANVPKSPI 1847
Score = 36.7 bits (81), Expect = 0.81
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +2
Query: 128 SLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
SL+LQA+T ++ + + + RLE +GD+ L Y IT +L+ G L+ LRS V
Sbjct: 1377 SLILQALTMSNANDGINLE---RLETIGDSFLKYAITTYLFCTYNNIHEGKLSHLRSKQV 1433
Query: 308 NN 313
+N
Sbjct: 1434 SN 1435
>UniRef50_UPI0000D5738B Cluster: PREDICTED: similar to CG4792-PA; n=1;
Tribolium castaneum|Rep: PREDICTED: similar to CG4792-PA
- Tribolium castaneum
Length = 1835
Score = 275 bits (674), Expect = 1e-72
Identities = 128/185 (69%), Positives = 158/185 (85%)
Frame = +2
Query: 11 KLPRSPLLRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY 190
+LP+SPL ++ P EL+ ++ GY+Q ER + Y+FRDRS LLQA+THAS N LTDCY
Sbjct: 1555 ELPKSPLSNHLTYPREELDMLLDGYDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCY 1614
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHM 370
QRLEFLGDA+LDYLITRHLYED R HSPGALTDLRSALVNNTIFA+LA R+GFH+YFR++
Sbjct: 1615 QRLEFLGDAVLDYLITRHLYEDTRMHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNL 1674
Query: 371 SPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLD 550
SP LNEV++K+V++QE++GH++ +E YL+ E E+ EDVEVPKALGD+FESVAGAIFLD
Sbjct: 1675 SPSLNEVVEKFVRLQEDSGHTLVDELYLV--VETEEVEDVEVPKALGDVFESVAGAIFLD 1732
Query: 551 SGMSL 565
SGMSL
Sbjct: 1733 SGMSL 1737
Score = 46.0 bits (104), Expect = 0.001
Identities = 29/98 (29%), Positives = 50/98 (51%)
Frame = +2
Query: 65 EKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRH 244
E M +++ ++++ ++LLQA+T ++ + + + RLE +GD+ L Y IT +
Sbjct: 1332 ETMTFKFDEQPNLVEHPGPSPNVLLQALTMSNANDGINLE---RLETIGDSFLKYAITNY 1388
Query: 245 LYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
LY G L+ LRS V+N L R G +Y
Sbjct: 1389 LYSKYENVHEGKLSHLRSKQVSNLNLYRLGRRKGLGEY 1426
>UniRef50_Q86MA9 Cluster: Dicer-1; n=5; Coelomata|Rep: Dicer-1 -
Anopheles gambiae (African malaria mosquito)
Length = 2259
Score = 261 bits (639), Expect = 2e-68
Identities = 133/216 (61%), Positives = 160/216 (74%), Gaps = 19/216 (8%)
Frame = +2
Query: 59 ELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLIT 238
EL +++ G+E+ E+ L YRFRDRS LLQAMTHAS+ N LTDCYQRLEFLGDAILDYLIT
Sbjct: 1974 ELARLLQGFEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLIT 2033
Query: 239 RHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQE 418
RHLYED+R HSPGALTDLRSALVNNTIFA+LA RHGFHKYF H+SPGL EV+ ++V+IQ+
Sbjct: 2034 RHLYEDRRQHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQ 2093
Query: 419 ENGHSISEEHYLIHEDEME-------------------QAEDVEVPKALGDLFESVAGAI 541
ENGH I+EE Y + +++ E +AEDVEVPKALGD+FES+AGAI
Sbjct: 2094 ENGHRITEEEYYLPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAI 2153
Query: 542 FLDSGMSLGRRVEVVRAA*LGRELEAFXRGPXPXPL 649
FLDS MSL +V R +G E+E F P+
Sbjct: 2154 FLDSDMSLDTVWKVYRKM-MGPEIEKFSSSVPKSPI 2188
Score = 35.5 bits (78), Expect = 1.9
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +2
Query: 128 SLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
+++LQA+T ++ + + + RLE +GD+ L Y IT +LY G L+ LRS V
Sbjct: 1665 AIILQALTMSNANDGINLE---RLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 1721
Query: 308 NNTIFATLAAR 340
+N L R
Sbjct: 1722 SNLNLYRLGRR 1732
>UniRef50_UPI0000586635 Cluster: PREDICTED: similar to Dicer protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Dicer protein - Strongylocentrotus purpuratus
Length = 1850
Score = 226 bits (552), Expect = 7e-58
Identities = 109/188 (57%), Positives = 139/188 (73%), Gaps = 3/188 (1%)
Frame = +2
Query: 11 KLPRSPLLRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY 190
K P SPLLR V + E L+ + GY+ E+ + YRFRDR+ LLQA TH+S+HRN +TDCY
Sbjct: 1572 KQPESPLLRSVPNAEDVLQHQLVGYDGFEKTINYRFRDRAYLLQAFTHSSYHRNSITDCY 1631
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHM 370
QRLEFLGDA+LDYLITRHLY+ SPGALTDLRSALVNNTIFA+LA + FHKYF+
Sbjct: 1632 QRLEFLGDALLDYLITRHLYDHHTNLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAY 1691
Query: 371 SPGLNEVLKKYVKIQEENGHSI---SEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAI 541
+ + +V+ +V + ++ S+ Y + E E++ED+EVPKALGD+FESVAGAI
Sbjct: 1692 TANMFQVIDNFVTFVDAKNEALGMDSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAI 1751
Query: 542 FLDSGMSL 565
+LDSGMSL
Sbjct: 1752 YLDSGMSL 1759
>UniRef50_Q9UPY3 Cluster: Endoribonuclease Dicer; n=50; Eumetazoa|Rep:
Endoribonuclease Dicer - Homo sapiens (Human)
Length = 1912
Score = 221 bits (540), Expect = 2e-56
Identities = 102/174 (58%), Positives = 135/174 (77%), Gaps = 1/174 (0%)
Frame = +2
Query: 47 DPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILD 226
D + L ++SG+E E+ + YRF++++ LLQA THAS+H N +TDCYQRLEFLGDAILD
Sbjct: 1644 DADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILD 1703
Query: 227 YLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYV 406
YLIT+HLYED R HSPG LTDLRSALVNNTIFA+LA ++ +HKYF+ +SP L V+ +V
Sbjct: 1704 YLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFV 1763
Query: 407 KIQ-EENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+ Q E+N + E++ E+ ED+EVPKA+GD+FES+AGAI++DSGMSL
Sbjct: 1764 QFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSL 1817
>UniRef50_P34529 Cluster: Endoribonuclease dcr-1; n=2;
Caenorhabditis|Rep: Endoribonuclease dcr-1 -
Caenorhabditis elegans
Length = 1845
Score = 197 bits (481), Expect = 3e-49
Identities = 103/201 (51%), Positives = 143/201 (71%), Gaps = 13/201 (6%)
Frame = +2
Query: 23 SPLLRYVEDPEGE------LEKMVSGYE--QLERVLQYRFRDRSLLLQAMTHASHHRNVL 178
SPLLR+++ P L + ++ QLE + YRF++R+ L+QA THAS+ N +
Sbjct: 1550 SPLLRFIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRV 1609
Query: 179 TDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
T CYQRLEFLGDA+LDY+ITR+L+ED R +SPG LTDLRSALVNNTIFA+LA + F K+
Sbjct: 1610 TGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKH 1669
Query: 359 FRHMSPGLNEVLKKYVKIQEENGH--SISEEHYLI-HEDEME--QAEDVEVPKALGDLFE 523
F M PGL +++K+VK+ E + + E Y++ E+E++ Q ED+EVPKA+GD+FE
Sbjct: 1670 FIAMCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFE 1729
Query: 524 SVAGAIFLDSGMSLGRRVEVV 586
SVAGAI+LDSG +L +V+
Sbjct: 1730 SVAGAIYLDSGRNLDTTWQVI 1750
>UniRef50_Q174T8 Cluster: Dicer-1; n=3; Culicidae|Rep: Dicer-1 - Aedes
aegypti (Yellowfever mosquito)
Length = 1658
Score = 178 bits (434), Expect = 1e-43
Identities = 85/189 (44%), Positives = 124/189 (65%), Gaps = 1/189 (0%)
Frame = +2
Query: 59 ELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLIT 238
E++ + Y ++E +L Y+F+DR+ LLQA+THAS+ N +T YQ+LEFLGDA+LD+LI+
Sbjct: 1393 EVDAFLKNYRRIESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLIS 1452
Query: 239 RHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQE 418
+++E SPG LTDLRSALVNN A + RHG H Y S + + K+V QE
Sbjct: 1453 MYIFEQNPTMSPGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQE 1512
Query: 419 ENGHSISEE-HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVVRAA 595
+N H I+++ + L+ E + + AE V+VPKALGD+FES+ A+FLDSG +V+
Sbjct: 1513 QNKHEITDQVNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATWQVIYGM 1572
Query: 596 *LGRELEAF 622
+G E+ F
Sbjct: 1573 -MGNEILTF 1580
>UniRef50_UPI0000DB7B59 Cluster: PREDICTED: similar to Dicer-1
CG4792-PA; n=1; Apis mellifera|Rep: PREDICTED: similar to
Dicer-1 CG4792-PA - Apis mellifera
Length = 1040
Score = 177 bits (430), Expect = 4e-43
Identities = 89/187 (47%), Positives = 127/187 (67%), Gaps = 2/187 (1%)
Frame = +2
Query: 95 ERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSP 274
E L Y+F++R LLQA TH S+ N +T+CYQRLEFLGDAILD+LIT ++YE+ +P
Sbjct: 812 ETKLGYKFKNRGYLLQAFTHPSYSANNMTECYQRLEFLGDAILDFLITSYIYENCGNLNP 871
Query: 275 GALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE--H 448
G+LTDLRSALVNN FA L RHG H SP LN++++++VK QEE + +++E
Sbjct: 872 GSLTDLRSALVNNITFACLTVRHGLHIALLCYSPKLNDIIERFVKFQEERNYIVNDELLW 931
Query: 449 YLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVVRAA*LGRELEAFXR 628
L+ E+E AE V+VPK LGD+FES+ GAI+LDS +L E++ + + +E++ F +
Sbjct: 932 ILLEENECNIAEHVDVPKVLGDIFESIIGAIYLDSNKNLLVVWEIIYSI-MHKEIDEFSK 990
Query: 629 GPXPXPL 649
P+
Sbjct: 991 NIPKQPI 997
>UniRef50_UPI00015B633C Cluster: PREDICTED: similar to dicer-1; n=1;
Nasonia vitripennis|Rep: PREDICTED: similar to dicer-1 -
Nasonia vitripennis
Length = 1563
Score = 173 bits (420), Expect = 7e-42
Identities = 94/208 (45%), Positives = 131/208 (62%), Gaps = 5/208 (2%)
Frame = +2
Query: 41 VEDPE---GELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLG 211
VE+P+ G++ + + +E L Y+FR+R+ LLQA TH S+ N T YQRLEFLG
Sbjct: 1343 VENPQLGDGDVNVHIPWAQTMEERLGYKFRNRAFLLQAFTHPSYMPNRQTASYQRLEFLG 1402
Query: 212 DAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEV 391
DA+LD+L+T H+YE SPG LTDLRSALVNN FA LA R+G H ++P L ++
Sbjct: 1403 DAVLDFLLTIHIYETCGNLSPGELTDLRSALVNNITFACLAVRYGLHTALLALAPKLFDL 1462
Query: 392 LKKYVKIQEENGHSISEE--HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+ K+VK QE + I +E L+ E+E AE V+VPK LGD++ESV GAIFLDSG +L
Sbjct: 1463 IDKFVKFQENRNYKIDDELLWVLLEEEECNMAEHVDVPKVLGDIYESVIGAIFLDSGKNL 1522
Query: 566 GRRVEVVRAA*LGRELEAFXRGPXPXPL 649
+V+ + E++ F + P+
Sbjct: 1523 EVVWQVIYNL-MKNEIDLFSKNVPKQPI 1549
>UniRef50_UPI0000D5572D Cluster: PREDICTED: similar to CG6493-PA; n=1;
Tribolium castaneum|Rep: PREDICTED: similar to CG6493-PA
- Tribolium castaneum
Length = 1623
Score = 153 bits (370), Expect = 8e-36
Identities = 82/183 (44%), Positives = 118/183 (64%), Gaps = 1/183 (0%)
Frame = +2
Query: 83 YEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 262
+ ++E+ L Y F +R+ LLQA+TH+S+ N +T Y+RLEFLGDA+LD+LIT +++E
Sbjct: 1371 WREIEQRLGYTFTNRAFLLQALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHCG 1430
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISE 442
PG +TDLRS+LVNN FA+L R GFHK+ M+ L + K+ + I +
Sbjct: 1431 HLEPGQVTDLRSSLVNNNTFASLVVRCGFHKFLLMMNSNLQGHIDKFADYLASKNYVIDD 1490
Query: 443 E-HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVVRAA*LGRELEA 619
E L+ EDEM AE V+VPK LGD+FE++AGAI+LDS L + V V + RE++
Sbjct: 1491 EVLILLEEDEMNIAEYVDVPKVLGDIFEALAGAIYLDSNKDL-KTVWRVFYKIIWREIDL 1549
Query: 620 FXR 628
F +
Sbjct: 1550 FSK 1552
>UniRef50_Q9SP32 Cluster: Endoribonuclease Dicer homolog; n=8;
Embryophyta|Rep: Endoribonuclease Dicer homolog -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1909
Score = 139 bits (337), Expect = 8e-32
Identities = 79/176 (44%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Frame = +2
Query: 32 LRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLG 211
L+ V PE L+ + + LER L+Y F+++ LL++A+THAS + ++ CYQRLEF+G
Sbjct: 1544 LKNVNVPESVLKSI--DFVGLERALKYEFKEKGLLVEAITHASRPSSGVS-CYQRLEFVG 1600
Query: 212 DAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEV 391
DA+LD+LITRHL+ PG LTDLR+A VNN FA +A +H H Y RH S L +
Sbjct: 1601 DAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQ 1660
Query: 392 LKKYVK-IQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
++++VK +Q E+ L D + PK LGD+ ES+AGAIFLDSG
Sbjct: 1661 IREFVKEVQTESSKPGFNSFGL---------GDCKAPKVLGDIVESIAGAIFLDSG 1707
Score = 56.4 bits (130), Expect = 9e-07
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 22/178 (12%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
QL+ ++ Y S +L+A+T AS T CY+R E LGDA L ++++R L+
Sbjct: 1345 QLKNLISYPI-PTSKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQK 1400
Query: 269 SPGALTDLRSALVNNTIFATLAARHGFHKYF--------RHMSPGLNEVLKKYVK----- 409
G LT +R +V+N + A G Y R +PG+ V + K
Sbjct: 1401 HEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSS 1460
Query: 410 IQEENGHSISEEHYLIHED-EMEQAE--------DVEVPKALGDLFESVAGAIFLDSG 556
+E +SEE+ + ED EME E V K L D+ E++ G +++ G
Sbjct: 1461 FFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGG 1518
>UniRef50_Q9M9P8 Cluster: T17B22.1 protein; n=13; Eukaryota|Rep:
T17B22.1 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 2042
Score = 137 bits (332), Expect = 3e-31
Identities = 73/167 (43%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Frame = +2
Query: 59 ELEKMVS-GYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLI 235
+ EK+V+ GY +E +L Y F D+SLL++A+TH S+ + CYQRLEFLGD++LDYLI
Sbjct: 1796 QAEKLVNVGY--MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLI 1853
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQ 415
T+HLY+ C SPG LTD+RSA VNN +A +A + HK+ + S L++ + +
Sbjct: 1854 TKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISR----- 1908
Query: 416 EENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
++SE + D+ PK LGD+ ES+AGAIF+DSG
Sbjct: 1909 -----TVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSG 1950
>UniRef50_A7SIA4 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 261
Score = 137 bits (331), Expect = 4e-31
Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHR--NVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
+E L Y FRDR +LLQA+TH S+ R + + Y++LEFLGDA+LDYL+TRH+ +
Sbjct: 9 VEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPR 68
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYV-KIQE-ENGHSIS 439
SPGA+TDLRSA+VNN A L + FHK+ R MS L +V++++V ++ E E +
Sbjct: 69 LSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEKETRP 128
Query: 440 EEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
++ L ++ E +EVPK LGDLFE++ GA+++D G
Sbjct: 129 DQLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCG 167
>UniRef50_Q2HTA7 Cluster: Helicase, C-terminal; Argonaute and Dicer
protein, PAZ; Ribonuclease III, bacterial; n=1; Medicago
truncatula|Rep: Helicase, C-terminal; Argonaute and Dicer
protein, PAZ; Ribonuclease III, bacterial - Medicago
truncatula (Barrel medic)
Length = 1939
Score = 132 bits (318), Expect = 2e-29
Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Frame = +2
Query: 83 YEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 262
++ LE L +F+D+ LL++++THAS + ++ CYQRLEF+GDA+LD+LITRHL+
Sbjct: 1601 FDALEGALNIKFKDKGLLIESITHASRPSSGVS-CYQRLEFVGDAVLDHLITRHLFFSYT 1659
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK-IQEENGHSIS 439
PG LTDLR+A VNN FA + +H H + RH S L + +K +VK +Q+E +S
Sbjct: 1660 DLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDE----LS 1715
Query: 440 EEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
+ + D + PK LGD+ ES+AGAIFLDSG
Sbjct: 1716 KPGF-----NSFGLGDCKAPKVLGDILESIAGAIFLDSG 1749
Score = 51.6 bits (118), Expect = 3e-05
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Frame = +2
Query: 134 LLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNN 313
+L+A+T AS T CY+R E LGDA L ++++R L+ G LT +R +V+N
Sbjct: 1399 ILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSN 1455
Query: 314 TIFATLAARHGFHKYF--------RHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDE 469
+ A G Y R +PG+ V + K +E +E + +
Sbjct: 1456 MVLYRYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTK--DEESSLFDQERSIFKAER 1513
Query: 470 MEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVV 586
M+ ++ E G+L ES + + + S +L VE +
Sbjct: 1514 MDNTDEFEDEMEDGEL-ESDSSSYRVLSSKTLADVVEAL 1551
>UniRef50_A7PXV4 Cluster: Chromosome chr15 scaffold_37, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr15 scaffold_37, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1961
Score = 130 bits (314), Expect = 5e-29
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Frame = +2
Query: 50 PEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDY 229
PE L + ++ LE L +F +R LL++A+THAS + ++ CYQRLEF+GDA+LD+
Sbjct: 1613 PESILRSV--NFDTLEGALNIKFNNRGLLIEAITHASRPSSGVS-CYQRLEFVGDAVLDH 1669
Query: 230 LITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK 409
LITRHL+ PG LTDLR+A VNN FA +A +H H + RH S L + ++ +VK
Sbjct: 1670 LITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIHLRHGSSALEKQIRDFVK 1729
Query: 410 -IQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
+Q+E +S+ + D + PK LGD+ ES+AGAIFLDSG
Sbjct: 1730 EVQDE----LSKPGF-----NSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1770
Score = 47.2 bits (107), Expect = 6e-04
Identities = 30/92 (32%), Positives = 47/92 (51%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
QL+ V+ Y + +L+A+T AS T CY+R E LGDA L ++++R L+
Sbjct: 1403 QLKDVINYPV-PAAKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQK 1458
Query: 269 SPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
G LT +R +V+N + A G Y +
Sbjct: 1459 HEGQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1490
>UniRef50_Q0IWV3 Cluster: Os10g0485600 protein; n=7; Eukaryota|Rep:
Os10g0485600 protein - Oryza sativa subsp. japonica
(Rice)
Length = 1605
Score = 126 bits (304), Expect = 8e-28
Identities = 70/164 (42%), Positives = 96/164 (58%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
++ E+LE L+Y F + LLL+A+TH S + CYQRLEFLGD++LD L+TRHLY
Sbjct: 1265 INDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYA 1324
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHS 433
PG LTDLRSALV+N FA R+ H + +H S L E + +YV+ E
Sbjct: 1325 THTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGK 1384
Query: 434 ISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
E E Q +VPK LGD+ ES+AGA+F+D+ ++
Sbjct: 1385 ---------ESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNV 1419
Score = 34.3 bits (75), Expect = 4.3
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +2
Query: 89 QLERVLQYRFR-DRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
QL R + Y +L+L+A+T R T +RLE LGD++L Y++ L+
Sbjct: 1060 QLRREIGYNQHIPVTLILEAITTL---RCCETFSLERLELLGDSVLKYVVGCDLFLRYPM 1116
Query: 266 HSPGALTDLRSALVNNTIFATLAARHG 346
G L+D+RS V N ATL +HG
Sbjct: 1117 KHEGQLSDMRSKAVCN---ATL-HKHG 1139
>UniRef50_Q95YG3 Cluster: Double-strand-specific ribonuclease; n=28;
Sophophora|Rep: Double-strand-specific ribonuclease -
Drosophila melanogaster (Fruit fly)
Length = 1722
Score = 126 bits (303), Expect = 1e-27
Identities = 63/152 (41%), Positives = 94/152 (61%)
Frame = +2
Query: 59 ELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLIT 238
E++ + + LE+ L Y F+DR LLQA+TH S+ N +T YQ LEF+GDAILD+LI+
Sbjct: 1425 EIDGFLINHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLIS 1484
Query: 239 RHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQE 418
+++E+ +PGALTDLRSALVNNT A + RH H + + L+E++ K+V QE
Sbjct: 1485 AYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQE 1544
Query: 419 ENGHSISEEHYLIHEDEMEQAEDVEVPKALGD 514
GH ++ ++ +E+A+ P L D
Sbjct: 1545 SQGHRVTNYVRIL----LEEADVQPTPPDLDD 1572
Score = 35.1 bits (77), Expect = 2.5
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 467 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVV 586
E + +V+VPKALGD+ E++ A++LD L R EV+
Sbjct: 1599 EFSMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVI 1637
>UniRef50_Q10HL3 Cluster: Type III restriction enzyme, res subunit
family protein, expressed; n=10; Oryza sativa|Rep: Type
III restriction enzyme, res subunit family protein,
expressed - Oryza sativa subsp. japonica (Rice)
Length = 1410
Score = 122 bits (293), Expect = 2e-26
Identities = 69/154 (44%), Positives = 91/154 (59%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
LE +L Y+F D LLL+A+TH S+ + T CYQRLEFLGDAILD+L T + Y +
Sbjct: 1164 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 1223
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHY 451
P LTDLRSA VNN +A A + G +K+ H S L+ + Y+ EE G S + Y
Sbjct: 1224 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYL---EEFGQSFTGPSY 1280
Query: 452 LIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDS 553
+ +PK LGD+ ES+AGAI+LDS
Sbjct: 1281 -------GWEAGIGLPKVLGDVIESIAGAIYLDS 1307
Score = 44.4 bits (100), Expect = 0.004
Identities = 31/122 (25%), Positives = 50/122 (40%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHM 370
+ LE LGD+ L Y+ TRHL+ + R G LT ++ L++N LA Y
Sbjct: 1006 ESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAE 1065
Query: 371 SPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLD 550
+ + + E + IS +L Q + K + D E++ GA
Sbjct: 1066 EFNPRDWIIPCLDYDERDNKKIS---FLAPNGMYSQRKMSIKSKRIADSVEALIGAYLST 1122
Query: 551 SG 556
+G
Sbjct: 1123 AG 1124
>UniRef50_A7PV34 Cluster: Chromosome chr4 scaffold_32, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_32, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1340
Score = 122 bits (293), Expect = 2e-26
Identities = 69/154 (44%), Positives = 90/154 (58%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
LE +L Y FRD SLL++A+TH S+ + CYQRLEFLGDA+LDYL+T HLY S
Sbjct: 1098 LESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMS 1157
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHY 451
PG LTDLRSA VNN +A A + H++ H S + L +++ + N + E
Sbjct: 1158 PGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSS----QELHRHIVVTVGNFDKLPVEST 1213
Query: 452 LIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDS 553
E E PK LGD+ ES+AGAI +DS
Sbjct: 1214 FGWESES------SFPKVLGDVIESLAGAILVDS 1241
>UniRef50_A3A0R6 Cluster: Putative uncharacterized protein; n=4; Oryza
sativa|Rep: Putative uncharacterized protein - Oryza
sativa subsp. japonica (Rice)
Length = 1889
Score = 122 bits (293), Expect = 2e-26
Identities = 69/161 (42%), Positives = 96/161 (59%)
Frame = +2
Query: 83 YEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 262
+E LE L Y F + LL++A+TH S CY+RLEFLGDA+LD L+TR+L+ +
Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISE 442
+ G LTDLRSA VNN FA +A +H FH + +H S L + + +YV E G S+ +
Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLE--GSSMDK 1292
Query: 443 EHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
L D + + PK LGD+ ES+AGAI LD+ + L
Sbjct: 1293 VELL--SDGLPKG-----PKVLGDIVESIAGAILLDTKLDL 1326
>UniRef50_A7P4V9 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1593
Score = 121 bits (292), Expect = 2e-26
Identities = 71/161 (44%), Positives = 95/161 (59%), Gaps = 1/161 (0%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E LE + Y F + LLL+A+THA+ + CYQRLEFLGD++LD LIT HLY+ R
Sbjct: 1194 EILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHRD 1253
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
PG LTDLRSA VNN FA +A R ++ +H S L +K+Y K
Sbjct: 1254 IDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAK------------ 1301
Query: 446 HYLIHEDEM-EQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
YL D++ + + PKALGDL ES+AGAI +D+ ++L
Sbjct: 1302 -YLSGSDDVPNPLQSTKGPKALGDLVESIAGAILIDTKLNL 1341
Score = 35.1 bits (77), Expect = 2.5
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +2
Query: 128 SLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
SL+L+A+T + +RLE LGD++L Y ++ HL+ G L+ RS +V
Sbjct: 999 SLILEAITTLRCSESF---SMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVV 1055
Query: 308 NNTIFATLAARHGFHKYFR 364
N+ L Y R
Sbjct: 1056 CNSTLHKLGTDRSLQGYIR 1074
>UniRef50_Q0E5R5 Cluster: Putative dicer-like protein; n=1; Mucor
circinelloides|Rep: Putative dicer-like protein - Mucor
circinelloides
Length = 1529
Score = 109 bits (261), Expect = 1e-22
Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
+++ R+L Y F++ +L+ +A+THAS N CYQRLEFLGDA+LD+ +T +L+E
Sbjct: 1252 KKVSRILGYEFQNEALIAEALTHASV-TNSSVPCYQRLEFLGDAVLDFCVTNYLFEKYHT 1310
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
PG L DLR + VNN I + L + G H + RH S +K++ +E
Sbjct: 1311 APPGTLHDLRKSSVNNDILSVLCIQLGLHVHIRHFSTTFPSAVKQF------------QE 1358
Query: 446 HYLIHEDEM-EQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+ +DE E + PK L D+ ES+ GA+F+D+G +L
Sbjct: 1359 LVVASQDEKGEYWLNFNPPKVLSDVVESLIGAVFVDAGFNL 1399
Score = 38.3 bits (85), Expect = 0.26
Identities = 25/85 (29%), Positives = 45/85 (52%)
Frame = +2
Query: 104 LQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGAL 283
L R +D +L+A T +S L YQRLEFLGD++L ++ + +++ + L
Sbjct: 1055 LSGRMKD-PYMLEAFTASSAG---LEKDYQRLEFLGDSVLKFITSTYVFVTLPISNEFEL 1110
Query: 284 TDLRSALVNNTIFATLAARHGFHKY 358
T+ R +++NT A + ++Y
Sbjct: 1111 TESRMRMISNTALFKSAIQLRLYEY 1135
>UniRef50_Q01HF5 Cluster: OSIGBa0157K09-H0214G12.2 protein; n=4; Oryza
sativa|Rep: OSIGBa0157K09-H0214G12.2 protein - Oryza
sativa (Rice)
Length = 1604
Score = 106 bits (255), Expect = 7e-22
Identities = 62/158 (39%), Positives = 84/158 (53%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
LE ++ Y+F+ + LLLQA H S ++ CYQRLEFLGDA+L+Y+IT +LY
Sbjct: 1164 LEELIGYKFKHKGLLLQAFVHPSFSQHS-GGCYQRLEFLGDAVLEYVITSYLYSTYPDIK 1222
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHY 451
PG +TDLRS V N A A HK+ S L + K+ E +
Sbjct: 1223 PGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKF------------EMYV 1270
Query: 452 LIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+ E + E+ PKALGD+ ES GA+ LDSG +L
Sbjct: 1271 KLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNL 1308
Score = 39.9 bits (89), Expect = 0.086
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
+R E LGDA L Y++ RH + G LT RS +VNN+ L+ R Y R
Sbjct: 990 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1047
>UniRef50_A7LFZ6 Cluster: Dicer-like protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Dicer-like protein - Oryza
sativa subsp. japonica (Rice)
Length = 1657
Score = 106 bits (255), Expect = 7e-22
Identities = 62/158 (39%), Positives = 84/158 (53%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
LE ++ Y+F+ + LLLQA H S ++ CYQRLEFLGDA+L+Y+IT +LY
Sbjct: 1217 LEELIGYKFKHKGLLLQAFVHPSFSQHS-GGCYQRLEFLGDAVLEYVITSYLYSTYPDIK 1275
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHY 451
PG +TDLRS V N A A HK+ S L + K+ E +
Sbjct: 1276 PGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKF------------EMYV 1323
Query: 452 LIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+ E + E+ PKALGD+ ES GA+ LDSG +L
Sbjct: 1324 KLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNL 1361
Score = 39.9 bits (89), Expect = 0.086
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
+R E LGDA L Y++ RH + G LT RS +VNN+ L+ R Y R
Sbjct: 1043 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1100
>UniRef50_Q9LXW7 Cluster: Putative uncharacterized protein T15B3_60;
n=1; Arabidopsis thaliana|Rep: Putative uncharacterized
protein T15B3_60 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1531
Score = 104 bits (249), Expect = 4e-21
Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
+LER +Q+ F + LL +A+TH+S + Y+RLEFLGD++LD+LITRHL+
Sbjct: 1151 ELERKIQHEFSAKFLLKEAITHSSLRESY---SYERLEFLGDSVLDFLITRHLFNTYEQT 1207
Query: 269 SPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYV---KIQEENGHSIS 439
PG +TDLRSA VNN FA +A ++ H + + + L + Y+ + +E G SI
Sbjct: 1208 GPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSI- 1266
Query: 440 EEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
++ PKALGD+ ES+AGA+ +D+ + L
Sbjct: 1267 --------------PSIQGPKALGDVVESIAGALLIDTRLDL 1294
Score = 35.1 bits (77), Expect = 2.5
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
+RLE LGD++L Y+ + HL+ G L+ R ++++N+ L Y R+
Sbjct: 973 ERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1031
>UniRef50_Q3SA53 Cluster: Dicer-like 4; n=2; core eudicotyledons|Rep:
Dicer-like 4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1702
Score = 103 bits (246), Expect = 8e-21
Identities = 64/160 (40%), Positives = 85/160 (53%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E LE L Y+F + LL+QA H S++R+ CYQRLEFLGDA+LDYL+T + +
Sbjct: 1293 ETLENQLDYKFLHKGLLVQAFIHPSYNRHG-GGCYQRLEFLGDAVLDYLMTSYFFTVFPK 1351
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
PG LTDLRS VNN A +A ++ S L+EV++ Y + +
Sbjct: 1352 LKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASG-- 1409
Query: 446 HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
Q+E PK LGDL ES GA+FLD G +L
Sbjct: 1410 ----------QSEGPRCPKVLGDLVESCLGALFLDCGFNL 1439
Score = 48.0 bits (109), Expect = 3e-04
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Frame = +2
Query: 134 LLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNN 313
+L+A+T H + +RLE LGDA L + ++RHL+ G LT RS +VNN
Sbjct: 1103 VLEALTTEKCHERL---SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNN 1159
Query: 314 TIFATLAARHGFHKYFRHMSPGLNEVLK-------KYVKIQEENGHSISEEHYLIHEDEM 472
+ LA + Y R + + ++ + HS++ + ++ +
Sbjct: 1160 SNLCRLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTG 1219
Query: 473 E----QAEDVEVPKALGDLFESVAGAIFLDSG 556
E + K + D+ E++ GA +DSG
Sbjct: 1220 EIRCSKGHHWLYKKTIADVVEALVGAFLVDSG 1251
>UniRef50_A7PX71 Cluster: Chromosome chr12 scaffold_36, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr12 scaffold_36, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 287
Score = 98.7 bits (235), Expect = 2e-19
Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Frame = +2
Query: 53 EGELEKMVSGYEQ---------LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEF 205
EGE E YE +E++L Y F ++ LL +A THAS +N + Y+RLEF
Sbjct: 11 EGETESCADSYESAESFPSLEGVEQILGYSFTNKRLLEEAYTHASCQKNQFS--YERLEF 68
Query: 206 LGDAILDYLITRH---LYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSP 376
+GD++L LIT+ LY D + PG LT LRSA V+ A +A +HG H++ RH P
Sbjct: 69 MGDSVLSLLITKEQFFLYPDLQ---PGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKP 125
Query: 377 GLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
+ + + ++ + +E Y +H + +EVPK L D+ ES GA+F+D
Sbjct: 126 KIEQQIYEFAEAIKE---------YPLHSN-----GQIEVPKVLADVVESTIGAVFVDCN 171
Query: 557 MSL 565
S+
Sbjct: 172 CSV 174
>UniRef50_O23395 Cluster: UFD1 like protein; n=8; Magnoliophyta|Rep:
UFD1 like protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 778
Score = 91.1 bits (216), Expect = 4e-17
Identities = 56/155 (36%), Positives = 87/155 (56%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E LE++L Y+F+D+SLLL+A T AS+ + ++ Y+ LE LGD+IL+ I +
Sbjct: 55 ESLEKILNYKFKDKSLLLKAFTDASYVDDK-SESYELLELLGDSILNMGIIYDFIKLYPK 113
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
+PG LT LR+ V+ A +A H + Y RH P L E + ++V+ E+
Sbjct: 114 EAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEK-------- 165
Query: 446 HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLD 550
Y +H + + ++VPK L D+ ES GAIF+D
Sbjct: 166 -YPLHSNGL-----LKVPKVLADIVESTIGAIFMD 194
>UniRef50_Q1DKI1 Cluster: Dicer-like protein 1 [Includes:
Endoribonuclease DCL1 (EC 3.1.26.-); ATP-dependent
helicase DCL1 (EC 3.6.1.-)]; n=2; Coccidioides
immitis|Rep: Dicer-like protein 1 [Includes:
Endoribonuclease DCL1 (EC 3.1.26.-); ATP-dependent
helicase DCL1 (EC 3.6.1.-)] - Coccidioides immitis
Length = 1464
Score = 89.0 bits (211), Expect = 1e-16
Identities = 56/159 (35%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRN-VLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
Q+++ L Y F+ LL A TH S+ CYQRLEFLGDA+LD H+Y
Sbjct: 1189 QVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPD 1248
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
P LT+ + A+V+N ++A R G H + H S L + YV+ E +
Sbjct: 1249 KDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDP 1308
Query: 446 HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMS 562
D D PK L D+ E+ GAIF+DSG S
Sbjct: 1309 -----PDAWTLTSDP--PKCLPDMVEAYIGAIFIDSGFS 1340
>UniRef50_A4RKC3 Cluster: Dicer-like protein 1 [Includes:
Endoribonuclease DCL1 (EC 3.1.26.-); ATP-dependent
helicase DCL1 (EC 3.6.1.-)]; n=2; Magnaporthe grisea|Rep:
Dicer-like protein 1 [Includes: Endoribonuclease DCL1 (EC
3.1.26.-); ATP-dependent helicase DCL1 (EC 3.6.1.-)] -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1591
Score = 88.2 bits (209), Expect = 2e-16
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLT-DCYQRLEFLGDAILDYLITRHLYEDKRC 265
Q++ + YRF++ LL A H S+ R YQRLEFLGD++LD + +L++
Sbjct: 1245 QIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHPD 1304
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
P LT+ + A+V+N F +A GFH++ HM P L + ++ ++ + +
Sbjct: 1305 KDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQL 1364
Query: 446 HYLIHEDEMEQAED--VEV---PKALGDLFESVAGAIFLDSG 556
+ E + A D +EV PK L D+ E+ GA+F+D+G
Sbjct: 1365 AVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTG 1406
>UniRef50_Q9LTQ0 Cluster: Similarity to CAF protein; n=3; core
eudicotyledons|Rep: Similarity to CAF protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 391
Score = 87.8 bits (208), Expect = 3e-16
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Frame = +2
Query: 50 PEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTD--CYQRLEFLGDAIL 223
P + + E +E++L Y+F ++SLL +A+TH S TD Y+RLEF+GD+ +
Sbjct: 49 PSVPVSSEMESMEAVEKILNYKFSNKSLLKEAITHTS-----CTDFPSYERLEFIGDSAI 103
Query: 224 DYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKY 403
I+ +LY P L+ LR+A V+ A ++ HG + + R +P L+E +K++
Sbjct: 104 GLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEF 163
Query: 404 VKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGR 571
++ +E L + V+ PK L DLFES+AGA+++D L R
Sbjct: 164 -------SEAVGKEDDL----SVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQR 208
>UniRef50_Q09884 Cluster: Protein Dicer (Cell cycle control protein
dcr1) (RNA interference pathway protein dcr1) [Includes:
Endoribonuclease dcr1 (EC 3.1.26.-); ATP-dependent
helicase dcr1 (EC 3.6.1.-)]; n=2; Fungi/Metazoa
group|Rep: Protein Dicer (Cell cycle control protein
dcr1) (RNA interference pathway protein dcr1) [Includes:
Endoribonuclease dcr1 (EC 3.1.26.-); ATP-dependent
helicase dcr1 (EC 3.6.1.-)] - Schizosaccharomyces pombe
(Fission yeast)
Length = 1374
Score = 87.4 bits (207), Expect = 4e-16
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
+E + Y F+++ LL A H S + + + YQ+LEFLGDA+LDY+I ++LY+
Sbjct: 1086 IEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNA 1145
Query: 269 SPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEH 448
+ G LTD +S V N + + HKY +H S + + + +Y ++ E + SE
Sbjct: 1146 TSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENP 1205
Query: 449 YLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+ E ++ PK + D E++ AIFLDSG SL
Sbjct: 1206 WFWFE--------IDSPKFISDTLEAMICAIFLDSGFSL 1236
>UniRef50_P84634 Cluster: Dicer-like protein 4; n=1; Arabidopsis
thaliana|Rep: Dicer-like protein 4 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1589
Score = 86.2 bits (204), Expect = 1e-15
Identities = 47/106 (44%), Positives = 63/106 (59%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E LE L Y+F + LL+QA H S++R+ CYQRLEFLGDA+LDYL+T + +
Sbjct: 1222 ETLENQLDYKFLHKGLLVQAFIHPSYNRHG-GGCYQRLEFLGDAVLDYLMTSYFFTVFPK 1280
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKY 403
PG LTDLRS VNN A +A ++ S L+EV++ Y
Sbjct: 1281 LKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDY 1326
Score = 34.7 bits (76), Expect = 3.3
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Frame = +2
Query: 134 LLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNN 313
+L+A+T H + +RLE LGDA L + ++RHL+ G LT RS N
Sbjct: 1049 VLEALTTEKCHERL---SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRS---NV 1102
Query: 314 TIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEME----QA 481
I F + +EV K V HS++ + ++ + E +
Sbjct: 1103 YIRDQALDPTQFFAFGHPCRVTCDEVASKEV-------HSLNRDLGILESNTGEIRCSKG 1155
Query: 482 EDVEVPKALGDLFESVAGAIFLDSG 556
K + D+ E++ GA +DSG
Sbjct: 1156 HHWLYKKTIADVVEALVGAFLVDSG 1180
>UniRef50_Q69KJ0 Cluster: CAF protein-like; n=2; Oryza sativa|Rep:
CAF protein-like - Oryza sativa subsp. japonica (Rice)
Length = 299
Score = 85.8 bits (203), Expect = 1e-15
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 2/173 (1%)
Frame = +2
Query: 50 PEGELEKMVSG-YEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDC-YQRLEFLGDAIL 223
P G + M G +E +L Y FRD++L+ +A+TH S + Y+RLE+LGDA+L
Sbjct: 27 PPGFVPPMGPGEVAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVL 86
Query: 224 DYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKY 403
+++R ++ PG LT LR+A V+ A +A HG H + RH +P L+ + +
Sbjct: 87 TCVVSREVFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDF 146
Query: 404 VKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMS 562
++ Y IH + + ++ PK L D+ ES+ GAI+ DS +
Sbjct: 147 IE---------ELSMYPIHSNGL-----LDPPKVLCDVVESLIGAIYCDSNFN 185
>UniRef50_Q6BCJ7 Cluster: Dicer-related RNase III protein Dcl1p; n=2;
Tetrahymena thermophila|Rep: Dicer-related RNase III
protein Dcl1p - Tetrahymena thermophila
Length = 1275
Score = 85.8 bits (203), Expect = 1e-15
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 6/187 (3%)
Frame = +2
Query: 20 RSPLLRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMT-HASHHRNVLTDCYQR 196
RS ++ + E L+ +SG+E ++L Y F+D+SLL++A+ H++ + YQ
Sbjct: 993 RSEYRKFKQLHEQTLDIAISGFE---KILNYTFKDKSLLIKALNCHSNSNFEHYFQDYQI 1049
Query: 197 LEFLGDAILDYLITRHLYE-----DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYF 361
LEFLGDA+++ L+ H Y K+ +SP +++S L++N + +A + FH Y
Sbjct: 1050 LEFLGDALIEILVVSHGYHISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYA 1109
Query: 362 RHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAI 541
++S K Q++ E+ L + + + PK LGDL+ESVAGAI
Sbjct: 1110 LNIS-----------KYQQDEIIQFIEDCNLNTKFKESVSHQANSPKVLGDLWESVAGAI 1158
Query: 542 FLDSGMS 562
+DS +S
Sbjct: 1159 IMDSDIS 1165
Score = 41.9 bits (94), Expect = 0.021
Identities = 24/85 (28%), Positives = 42/85 (49%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
D LL+++ + S+ + T + LE +GD ++ Y+ + +LY S ALT +R+
Sbjct: 732 DLELLIESFSQISYSK---TKNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTI 788
Query: 302 LVNNTIFATLAARHGFHKYFRHMSP 376
+NN A R+G Y + P
Sbjct: 789 FINNKYLGISAFRNGLQFYVQTKRP 813
>UniRef50_A2Y2L5 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 344
Score = 85.0 bits (201), Expect = 2e-15
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 1/173 (0%)
Frame = +2
Query: 50 PEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDY 229
P G + ++ER+L+Y+FRD LL +A+TH S + ++ YQRLEF+GD+ L
Sbjct: 20 PPGFVADRAEAAARVERLLRYQFRDGRLLEEALTHQSFADDAVS--YQRLEFVGDSALGL 77
Query: 230 LITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK 409
+ LY PG L+ LR+A ++ A +A RH + R P L+ ++ ++++
Sbjct: 78 AFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIE 137
Query: 410 -IQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+++E +S Y V+ PK L D+ E++A A+++D L
Sbjct: 138 TVKQEPEDDLSTVPY--------GGSVVKAPKVLADIVEAIAAAVYVDCKFDL 182
>UniRef50_A2RAF3 Cluster: Dicer-like protein 1 [Includes:
Endoribonuclease dcl1 (EC 3.1.26.-); ATP-dependent
helicase dcl1 (EC 3.6.1.-)]; n=6; Trichocomaceae|Rep:
Dicer-like protein 1 [Includes: Endoribonuclease dcl1 (EC
3.1.26.-); ATP-dependent helicase dcl1 (EC 3.6.1.-)] -
Aspergillus niger
Length = 1525
Score = 83.0 bits (196), Expect = 9e-15
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRN-VLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
++E L YRFR +LL A TH S+ CYQRLEFLGD+++D + L+
Sbjct: 1245 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1304
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYV-KIQEENGHSI-S 439
P LT+ + A+V+N LA + G H + ++ S L + +Y +IQ G S +
Sbjct: 1305 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1364
Query: 440 EEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDS 553
+++ + +D PK L D+ E+ GA+F+DS
Sbjct: 1365 VDYWTVTKDP---------PKCLPDMVEAYVGAVFVDS 1393
>UniRef50_A6QZ52 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 1359
Score = 81.0 bits (191), Expect = 4e-14
Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 1/160 (0%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLT-DCYQRLEFLGDAILDYLITRHLYEDKR 262
+Q+ L Y F LL A THAS+ T CYQRLEFLGD++LD + +LY
Sbjct: 1097 KQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYP 1156
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISE 442
P LT+ + A+V+N + + G HK+ ++S L + +Y EE +++E
Sbjct: 1157 DRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYA---EEIEVAVAE 1213
Query: 443 EHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMS 562
D D PK L D+ E+ GAIF+DS S
Sbjct: 1214 S--ADSPDAWTTTSD--PPKCLPDMLEAYIGAIFVDSNFS 1249
>UniRef50_A6SBX3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 1842
Score = 74.1 bits (174), Expect = 4e-12
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
Q+E Y F+ LL A H ++ CYQRLEFLGD++LD L+ +
Sbjct: 1538 QVEMKHPYHFKHPRLLRSAFIHPAYLFIYEQIPCYQRLEFLGDSLLDMACVNFLFHNHPT 1597
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
P LT+ + A+V+N L + GFHK+ + + +++ Y E +
Sbjct: 1598 KDPQWLTEHKMAIVSNQFLGALCVKLGFHKHLLTLDSQVQKMIADYSSDINEALIQAKTD 1657
Query: 446 HYLIHEDEMEQAEDV-----EVPKALGDLFESVAGAIFLDSGMSLG 568
+ + E + A D + PK L D+ E+ GAIF+DS G
Sbjct: 1658 AKRVGKVEDDYARDYWIAVRQPPKCLPDIVEAFIGAIFVDSEYDYG 1703
>UniRef50_A1DE13 Cluster: Dicer-like protein 1 [Includes:
Endoribonuclease dcl1 (EC 3.1.26.-); ATP-dependent
helicase dcl1 (EC 3.6.1.-)]; n=5; Trichocomaceae|Rep:
Dicer-like protein 1 [Includes: Endoribonuclease dcl1 (EC
3.1.26.-); ATP-dependent helicase dcl1 (EC 3.6.1.-)] -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 1538
Score = 74.1 bits (174), Expect = 4e-12
Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 2/172 (1%)
Frame = +2
Query: 44 EDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRN--VLTDCYQRLEFLGDA 217
E P G + + +E L Y F LL A+TH S CYQRLEFLGD+
Sbjct: 1244 EKPRGSEDDLA---RHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDS 1300
Query: 218 ILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLK 397
+LD + L+ P LT+ + A+V+N L+ + GFH+ S L +
Sbjct: 1301 LLDMVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQIT 1360
Query: 398 KYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDS 553
YV EE + +E + D A+D PK L D+ E+ GAIF+DS
Sbjct: 1361 HYV---EEIESAQAESRGAV--DYWVVAKD--PPKCLPDMVEAYLGAIFVDS 1405
>UniRef50_UPI000023D196 Cluster: hypothetical protein FG04408.1; n=1;
Gibberella zeae PH-1|Rep: hypothetical protein FG04408.1
- Gibberella zeae PH-1
Length = 1451
Score = 72.9 bits (171), Expect = 1e-11
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 27/184 (14%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E LE ++ Y F+ +SLL++AMTH S+ + Y++LEFLGDA+LDY++ +++
Sbjct: 1155 EPLEELIGYTFQKKSLLIEAMTHGSYAADGQQRSYEQLEFLGDAVLDYIVVTRMFQSDPP 1214
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFH----------------------KYFRHMSPG 379
G L +++A+ N A +HG K+ RH SP
Sbjct: 1215 VPNGRLHMVKTAMANADFLAFTNMQHGLRRPEVEINENGEPVPTEVSLPIWKFMRHSSPE 1274
Query: 380 ----LNEVLKKYVKIQEE-NGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIF 544
+NE ++ +QEE N + +HY + K D+FE+ GAI+
Sbjct: 1275 MGRIMNETQARFESLQEEINEARTNGKHY-----PWTLLARLHPKKFYSDIFEATLGAIW 1329
Query: 545 LDSG 556
+DSG
Sbjct: 1330 VDSG 1333
Score = 42.3 bits (95), Expect = 0.016
Identities = 36/147 (24%), Positives = 63/147 (42%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
D L+++A++ S V Y+R+EFLGD++L Y Y + G L +
Sbjct: 984 DLQLVIEAISSRSAAEPV---DYERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKDR 1040
Query: 302 LVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQA 481
LV+NT + G K+ K + I+ + + +L + ++
Sbjct: 1041 LVSNTRLTRMCLETGLSKFI---------FSKTFTGIK---WRPLYRDEFL-DKKPVDGV 1087
Query: 482 EDVEVPKALGDLFESVAGAIFLDSGMS 562
PK L D+ E++ GA + D G+S
Sbjct: 1088 SRFVGPKTLADVVEALVGASYQDGGIS 1114
>UniRef50_Q9FKF0 Cluster: Emb|CAB88120.1; n=1; Arabidopsis
thaliana|Rep: Emb|CAB88120.1 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 957
Score = 72.9 bits (171), Expect = 1e-11
Identities = 49/173 (28%), Positives = 85/173 (49%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
++ E +E++L Y F +++LL +A+T S + RLEF GD+IL+ T ++
Sbjct: 1 MNSVEAVEKILNYSFVNKTLLKEAITQKS-------PLFDRLEFFGDSILEVAFTNYICH 53
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHS 433
L DLR+A V+N FA +A H H + +P L + +K + + +
Sbjct: 54 TYPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAE-------A 106
Query: 434 ISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVVRA 592
+ +E +D + V+ PK L D ES+A +F+D + R E+ R+
Sbjct: 107 VRKE-----DDPVPYGGLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRS 154
Score = 59.3 bits (137), Expect = 1e-07
Identities = 44/174 (25%), Positives = 86/174 (49%)
Frame = +2
Query: 68 KMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHL 247
+M S E +E++L Y F +++LL + +TH + + +Q L F+G++ L T+HL
Sbjct: 410 EMDSSVEAVEKILNYSFVNKTLLKELLTHNN------SPLFQGLMFVGESALSLAFTKHL 463
Query: 248 YEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENG 427
Y P L+ LR A + +A +A + G ++ F P ++ ++++ +
Sbjct: 464 YLTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGK-- 521
Query: 428 HSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVVR 589
++ Y + V+ PK L +L VAGA+++D ++ R +E+ R
Sbjct: 522 ---EDDPYRV----------VKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFR 562
>UniRef50_A6LNE7 Cluster: Ribonuclease III; n=1; Thermosipho
melanesiensis BI429|Rep: Ribonuclease III - Thermosipho
melanesiensis BI429
Length = 231
Score = 72.1 bits (169), Expect = 2e-11
Identities = 32/90 (35%), Positives = 53/90 (58%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
++E V+ YRFR++ LL A+TH S+ Y+RLEFLGD+++D L+ LYE +
Sbjct: 8 EIEHVIGYRFRNKELLFTALTHTSYANENKKQSYERLEFLGDSVIDILVCTILYEQYQTL 67
Query: 269 SPGALTDLRSALVNNTIFATLAARHGFHKY 358
+ G + ++SA+ + I +A + KY
Sbjct: 68 NEGTMAQIKSAVTSEDILFEIAKKFNLGKY 97
>UniRef50_UPI00015BD56E Cluster: UPI00015BD56E related cluster; n=1;
unknown|Rep: UPI00015BD56E UniRef100 entry - unknown
Length = 232
Score = 63.7 bits (148), Expect(2) = 5e-11
Identities = 33/95 (34%), Positives = 56/95 (58%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
+ +E LE + YRF+D++L+ +A TH S ++ ++ Y+ LEFLGDA+++++ L E
Sbjct: 1 MDSFELLEEKIGYRFKDKNLVKKAFTHISFSKS--SENYEVLEFLGDALVNFMTVNILVE 58
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
G L+ L+S L++ A+LA F KY
Sbjct: 59 AFPNKKEGELSQLKSFLISEEFLASLAKSLNFEKY 93
Score = 27.1 bits (57), Expect(2) = 5e-11
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 431 SISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
S++ E Y++ E + P L D+FE+ AI++DSG
Sbjct: 87 SLNFEKYILISKGEELKGSNKNPSILCDVFEAFWAAIYIDSG 128
>UniRef50_Q7S8J7 Cluster: Dicer-like protein 1 [Includes:
Endoribonuclease dcl-1 (EC 3.1.26.-); ATP-dependent
helicase dcl-1 (EC 3.6.1.-)]; n=2; Neurospora crassa|Rep:
Dicer-like protein 1 [Includes: Endoribonuclease dcl-1
(EC 3.1.26.-); ATP-dependent helicase dcl-1 (EC 3.6.1.-)]
- Neurospora crassa
Length = 1584
Score = 70.5 bits (165), Expect = 5e-11
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Frame = +2
Query: 110 YRFRDRSLLLQAMTHASHHRNV-LTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALT 286
Y+F+ LL A H ++ YQRLEFLGDA+ D + +L+ P LT
Sbjct: 1267 YKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADPQWLT 1326
Query: 287 DLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHED 466
+ + A+V+N L+ GF+K MSP + + + +YV EE + +E +
Sbjct: 1327 EHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIEEALETAKQEAINAGKT 1386
Query: 467 EMEQAEDV--------EVPKALGDLFESVAGAIFLDS 553
E + D +PK L D+ E+ GAIF+DS
Sbjct: 1387 ADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDS 1423
>UniRef50_Q6BCJ9 Cluster: Dicer-related RNase III protein Dcr2p; n=2;
Tetrahymena thermophila|Rep: Dicer-related RNase III
protein Dcr2p - Tetrahymena thermophila
Length = 1838
Score = 68.9 bits (161), Expect = 2e-10
Identities = 40/125 (32%), Positives = 67/125 (53%)
Frame = +2
Query: 185 CYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
C QRLEFLGDA+LD +I +L+ PG LT ++++LV N + GF+K+
Sbjct: 1621 CNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGFYKFI- 1679
Query: 365 HMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIF 544
G + K+ +++ N + L+++ Q+ + K LGD+ ES+ GAIF
Sbjct: 1680 ---IGSIQHNKEEIELLLNNVEMFMGDTSLMYDTTYNQS----LIKTLGDVIESLVGAIF 1732
Query: 545 LDSGM 559
+D+ +
Sbjct: 1733 IDNNL 1737
>UniRef50_Q2VF19 Cluster: Dicer-like protein 1 [Includes:
Endoribonuclease DCL-1 (EC 3.1.26.-); ATP-dependent
helicase DCL-1 (EC 3.6.1.-)]; n=2; Sordariomycetes|Rep:
Dicer-like protein 1 [Includes: Endoribonuclease DCL-1
(EC 3.1.26.-); ATP-dependent helicase DCL-1 (EC 3.6.1.-)]
- Cryphonectria parasitica (Chesnut blight fungus)
(Endothiaparasitica)
Length = 1548
Score = 68.9 bits (161), Expect = 2e-10
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 6/162 (3%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 262
+++ Y+F+ +L A H S + YQRLEFLGDA+ D +L+
Sbjct: 1249 QKIHEATGYQFKHPRVLRSAFRHPSRPYVFDKVPHYQRLEFLGDALFDMACVDYLFHIAP 1308
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISE 442
P LT+ + A+V+N LA GFHK+ H + + +YV E + +
Sbjct: 1309 DEGPQWLTEHKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEYVTEITEARRAAED 1368
Query: 443 EHYLIHEDEMEQAEDVEV-----PKALGDLFESVAGAIFLDS 553
+ + D V PK + D+ E+ GAIF+DS
Sbjct: 1369 AAEAAGKPRSAYSRDYWVEAPQPPKCIPDVLEAYVGAIFVDS 1410
>UniRef50_UPI0000E0E146 Cluster: ribonuclease III; n=1; alpha
proteobacterium HTCC2255|Rep: ribonuclease III - alpha
proteobacterium HTCC2255
Length = 241
Score = 68.5 bits (160), Expect = 2e-10
Identities = 36/97 (37%), Positives = 56/97 (57%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
+ + +L+R++ Y+F D SLL QA+TH S HR +RLEFLGDA+L ++ HL++
Sbjct: 18 IDPFVKLQRLIDYQFNDVSLLKQALTHKSAHRQH----NERLEFLGDAVLGMIVGEHLFK 73
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
G LT +RSA+V A +A G ++ +
Sbjct: 74 AFPNSPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQ 110
>UniRef50_O67082 Cluster: Ribonuclease 3; n=1; Aquifex aeolicus|Rep:
Ribonuclease 3 - Aquifex aeolicus
Length = 221
Score = 68.5 bits (160), Expect = 2e-10
Identities = 37/103 (35%), Positives = 60/103 (58%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
EQLE+ L Y F+D+SLL +A+TH S+ + + Y+ LEFLGDA++++ I L +
Sbjct: 5 EQLEKKLGYTFKDKSLLEKALTHVSYSKK---EHYETLEFLGDALVNFFIVDLLVQYSPN 61
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVL 394
G L+ L++ L++ F LA + HK+ R +NE +
Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 104
>UniRef50_A1C9M6 Cluster: Dicer-like protein 2 [Includes:
Endoribonuclease dcl2 (EC 3.1.26.-); ATP-dependent
helicase dcl2 (EC 3.6.1.-)]; n=10; cellular
organisms|Rep: Dicer-like protein 2 [Includes:
Endoribonuclease dcl2 (EC 3.1.26.-); ATP-dependent
helicase dcl2 (EC 3.6.1.-)] - Aspergillus clavatus
Length = 1389
Score = 68.5 bits (160), Expect = 2e-10
Identities = 36/94 (38%), Positives = 56/94 (59%)
Frame = +2
Query: 50 PEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDY 229
PEG + + +++L+R + Y F + SLL++A+TH S + T YQRLEFLGDA+LD
Sbjct: 1091 PEGARQTI---HDRLKRHISYTFENESLLVEALTHPSCDYDASTQSYQRLEFLGDAVLDM 1147
Query: 230 LITRHLYEDKRCHSPGALTDLRSALVNNTIFATL 331
+I ++ G +T ++ ALVN + A L
Sbjct: 1148 IIVSAIFNHPVQMPQGHMTKIKHALVNANLLAFL 1181
>UniRef50_Q2VF18 Cluster: Dicer-like protein 2 [Includes:
Endoribonuclease DCL-2 (EC 3.1.26.-); ATP-dependent
helicase DCL-2 (EC 3.6.1.-)]; n=1; Cryphonectria
parasitica|Rep: Dicer-like protein 2 [Includes:
Endoribonuclease DCL-2 (EC 3.1.26.-); ATP-dependent
helicase DCL-2 (EC 3.6.1.-)] - Cryphonectria parasitica
(Chesnut blight fungus) (Endothiaparasitica)
Length = 1451
Score = 68.1 bits (159), Expect = 3e-10
Identities = 35/95 (36%), Positives = 60/95 (63%)
Frame = +2
Query: 47 DPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILD 226
+P+G K+ + + LE++++Y F +++LL++A+TH S++ + CY RLEF+GDAILD
Sbjct: 1143 EPKGM--KLPADLQLLEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIGDAILD 1200
Query: 227 YLITRHLYEDKRCHSPGALTDLRSALVNNTIFATL 331
Y+I ++ + + LR+ALVN I L
Sbjct: 1201 YIIVEEVFALEPALENWQMHLLRTALVNADILGFL 1235
Score = 39.5 bits (88), Expect = 0.11
Identities = 36/134 (26%), Positives = 61/134 (45%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
Y+R+EFLGD+IL IT +L K G L+ ++ LV+N A ++
Sbjct: 1002 YERIEFLGDSILKTCITVNLAATKLHLPEGILSLMKDRLVSNARLCRAACDAELDQFL-- 1059
Query: 368 MSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFL 547
V ++ V G L +D+ +++ + PK L D+ E++ G F+
Sbjct: 1060 -------VTQQLV----TKGWQPPYMSDLAKQDQEPESKRILSPKTLADVVEALIGVSFV 1108
Query: 548 DSGMSLGRRVEVVR 589
D G L + +E +R
Sbjct: 1109 DGG--LPKALECIR 1120
>UniRef50_Q88WK0 Cluster: Ribonuclease 3; n=5; Lactobacillales|Rep:
Ribonuclease 3 - Lactobacillus plantarum
Length = 231
Score = 61.3 bits (142), Expect(2) = 3e-10
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +2
Query: 116 FRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALT 286
F D LL +A T AS+ H++ Y+R+EFLGDA+L+ +++ +LY+ + G LT
Sbjct: 17 FNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKRYKDMPQGKLT 76
Query: 287 DLRSALVNNTIFATLAARHGFHKYFR 364
LR+A+V FA+ A F +Y R
Sbjct: 77 RLRAAMVCEESFASFARECDFPQYIR 102
Score = 26.6 bits (56), Expect(2) = 3e-10
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 473 EQAEDVEVPKALGDLFESVAGAIFLDSG 556
++A E L D+FES GA++LD G
Sbjct: 108 QKAHAWERDSLLCDIFESFVGALYLDQG 135
>UniRef50_A1APX0 Cluster: Ribonuclease III; n=1; Pelobacter
propionicus DSM 2379|Rep: Ribonuclease III - Pelobacter
propionicus (strain DSM 2379)
Length = 234
Score = 67.3 bits (157), Expect = 5e-10
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHAS-HHRNVLTDCYQRLEFLGDAILDYLITRHL 247
M S +LER + YRF D++ LLQA+TH S H YQRLEFLGDA+L ++ L
Sbjct: 1 MASDLAELEREIAYRFIDQAPLLQALTHPSFEHEQAGGGNYQRLEFLGDAVLGMVLAEML 60
Query: 248 YEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
+ + G L+ LRS + + A +A G ++ R
Sbjct: 61 FRRFPDSNEGVLSRLRSQIADQDTLAGIARSFGLGRFVR 99
>UniRef50_Q0UL22 Cluster: Dicer-like protein 2 [Includes:
Endoribonuclease DCL2 (EC 3.1.26.-); ATP-dependent
helicase DCL2 (EC 3.6.1.-)]; n=1; Phaeosphaeria
nodorum|Rep: Dicer-like protein 2 [Includes:
Endoribonuclease DCL2 (EC 3.1.26.-); ATP-dependent
helicase DCL2 (EC 3.6.1.-)] - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 1399
Score = 67.3 bits (157), Expect = 5e-10
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 24/187 (12%)
Frame = +2
Query: 65 EKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRH 244
E + G + LE ++ Y F+ + LLL+A+THAS + Y+RLEFLGDA+LDY+I++
Sbjct: 1088 EADLMGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKR 1147
Query: 245 LYEDKRCHSPGALTDLRSALVNNT-----IFATL--------------AARHGFHKYFRH 367
L+ S + +R+A VN + +F T + + ++ R
Sbjct: 1148 LHAHSPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQFLRS 1207
Query: 368 MSPGLN----EVLKKYVKIQEENGHSISE-EHYLIHEDEMEQAEDVEVPKALGDLFESVA 532
SP LN L+++ ++++E ++E + H + + PK L D+ ESV
Sbjct: 1208 GSPSLNANRDNALRQHEQVRDEIIIGLNEAARFPWHLFAL-----TDPPKFLSDMVESVI 1262
Query: 533 GAIFLDS 553
GA+++DS
Sbjct: 1263 GAVYIDS 1269
Score = 39.1 bits (87), Expect = 0.15
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 182 DCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYF 361
D YQRLEFLGD IL ++ T HL LT + +V+N A G ++
Sbjct: 944 DNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFM 1003
Query: 362 RHMS-PGLNEVLKKYVKIQEENGHSISEE 445
S G + + E G ++ EE
Sbjct: 1004 ITKSFTGAKWAPRYAGDLLAETGPAVKEE 1032
>UniRef50_A2QX45 Cluster: Dicer-like protein 2-2 [Includes:
Endoribonuclease dcl2-2 (EC 3.1.26.-); ATP-dependent
helicase dcl2-2 (EC 3.6.1.-)]; n=2; Aspergillus
niger|Rep: Dicer-like protein 2-2 [Includes:
Endoribonuclease dcl2-2 (EC 3.1.26.-); ATP-dependent
helicase dcl2-2 (EC 3.6.1.-)] - Aspergillus niger
Length = 1362
Score = 66.9 bits (156), Expect = 7e-10
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
+E +L Y F D+SL +++MTH S V T Y+RL FLG ++L++++ +L+ + +
Sbjct: 1078 MEELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMN 1137
Query: 272 PGALTDLRSALVNNTIFATLAA---------------RHGFHK-----------YFRHMS 373
P + L+SA NNT +A H HK + R S
Sbjct: 1138 PQRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHS 1197
Query: 374 PGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDS 553
L+ L +V+ E +I E + + + + L D+ +S+ GA+F+DS
Sbjct: 1198 DALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFGAVFIDS 1257
Query: 554 GMSL 565
+L
Sbjct: 1258 QATL 1261
>UniRef50_Q0UI93 Cluster: Dicer-like protein 1 [Includes:
Endoribonuclease DCL1 (EC 3.1.26.-); ATP-dependent
helicase DCL1 (EC 3.6.1.-)]; n=1; Phaeosphaeria
nodorum|Rep: Dicer-like protein 1 [Includes:
Endoribonuclease DCL1 (EC 3.1.26.-); ATP-dependent
helicase DCL1 (EC 3.6.1.-)] - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 1522
Score = 66.9 bits (156), Expect = 7e-10
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHH---RNVLTDCYQRLEFLGDAILDYLITRHLYEDK 259
++E YRFR LL A H S N+ + YQRLEFLGD++LD HL+
Sbjct: 1224 KIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPS--YQRLEFLGDSLLDMAFIMHLFYKY 1281
Query: 260 RCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYV-KIQEENGHSI 436
P LT+ ++ +V+N + + G+H + + + L+ ++ YV +++E +
Sbjct: 1282 PDKDPQWLTEHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREAN 1341
Query: 437 SEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDS 553
Y + E PK L D+ E+ AIF+DS
Sbjct: 1342 GAVDYWVSVS--------EPPKCLADVIEAFVAAIFVDS 1372
>UniRef50_Q92JB0 Cluster: Ribonuclease 3; n=8; Rickettsia|Rep:
Ribonuclease 3 - Rickettsia conorii
Length = 227
Score = 65.7 bits (153), Expect = 2e-09
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHAS---HHRNVLTDCYQRLEFLGDAILDYLITRH 244
+ +E+LE++L Y F+++ LL++A++H S HH Y+RLEFLGDA+L+ +IT
Sbjct: 1 MESFEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEI 60
Query: 245 LYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
L+ + ++ G L +RS LV + A+ Y
Sbjct: 61 LFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNY 98
>UniRef50_A4XJW5 Cluster: Ribonuclease III; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Ribonuclease III - Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903)
Length = 224
Score = 64.5 bits (150), Expect = 4e-09
Identities = 33/89 (37%), Positives = 57/89 (64%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
+E+ L YRF++ +LL A+TH S + + CY+RLEFLGDA+L+ +++++L+E S
Sbjct: 4 IEKKLGYRFKNPNLLKLALTHKSATHDDKS-CYERLEFLGDAVLELVVSKYLFEHFPQLS 62
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKY 358
G LT+LR+ +V + + +A +Y
Sbjct: 63 EGELTNLRATIVCSETLSKVAETLNLKRY 91
>UniRef50_A6R2T0 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 1437
Score = 64.5 bits (150), Expect = 4e-09
Identities = 36/98 (36%), Positives = 54/98 (55%)
Frame = +2
Query: 38 YVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDA 217
Y PE + S ++++E ++ Y F + L+QA TH S+ + T YQRLEF+GDA
Sbjct: 1082 YSSVPEAYENTLTSWFQEVESLVGYVFNKKVFLVQAFTHPSNPGSK-TSSYQRLEFVGDA 1140
Query: 218 ILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATL 331
ILD++I HL+ R + +R+AL N A L
Sbjct: 1141 ILDHIIVHHLFNAPRALPHFDMHLMRTALANADFLAFL 1178
Score = 39.1 bits (87), Expect = 0.15
Identities = 27/81 (33%), Positives = 40/81 (49%)
Frame = +2
Query: 116 FRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLR 295
F D SL++ A++ AS R YQR+EFLGD+IL + T L G L+ +
Sbjct: 924 FTDLSLVITAIS-ASVAREATN--YQRIEFLGDSILKFQTTLQLTATNLIWHEGLLSRAK 980
Query: 296 SALVNNTIFATLAARHGFHKY 358
+V+N + A G K+
Sbjct: 981 DTVVSNKRLSYAAIEAGLDKF 1001
>UniRef50_Q5F9X7 Cluster: Ribonuclease 3; n=5;
Betaproteobacteria|Rep: Ribonuclease 3 - Neisseria
gonorrhoeae (strain ATCC 700825 / FA 1090)
Length = 239
Score = 64.5 bits (150), Expect = 4e-09
Identities = 34/82 (41%), Positives = 52/82 (63%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
+++ L Y FRD SLL +A+TH SHH +R EF+GD+IL+Y + R L++ +
Sbjct: 14 IQKKLGYAFRDMSLLRRALTHRSHHAKH----NERFEFVGDSILNYTVARMLFDAFPKLT 69
Query: 272 PGALTDLRSALVNNTIFATLAA 337
G L+ LR++LVN + A +AA
Sbjct: 70 EGELSRLRASLVNEGVLAEMAA 91
>UniRef50_A2WR94 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 256
Score = 64.1 bits (149), Expect = 5e-09
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 5/164 (3%)
Frame = +2
Query: 89 QLERVLQ-YRFRDRSLLL--QAMTHASHHRNVLTDC--YQRLEFLGDAILDYLITRHLYE 253
++ER L Y FRD LL A+TH+ H R+ +QRLEFLGDA L Y
Sbjct: 23 EVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYR 82
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHS 433
D G LT LRSA V+ A +A R R + P +L++Y ++ H
Sbjct: 83 DDPGLDQGDLTVLRSANVSTQKLARVAVR-------RRLYP----LLRRYNCAPQD--HE 129
Query: 434 ISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+S + + + + +E P+ L D+ E++ GA++LDS + L
Sbjct: 130 VS--RFTKSVEGLYSGDPIEGPRVLADIVEAIVGAVYLDSKLDL 171
>UniRef50_Q5NER3 Cluster: Ribonuclease 3; n=11; Francisella
tularensis|Rep: Ribonuclease 3 - Francisella tularensis
subsp. tularensis
Length = 230
Score = 64.1 bits (149), Expect = 5e-09
Identities = 36/96 (37%), Positives = 54/96 (56%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLY 250
MV Y + +L Y F+D +LL++A+TH S + Y+RLEFLGD++L ++I LY
Sbjct: 1 MVPEYSRFYNILGYNFKDYTLLIRALTHRSKTKKN----YERLEFLGDSVLSFVIAEVLY 56
Query: 251 EDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
+ + G L+ LRS LV A LA+ +Y
Sbjct: 57 KQFIDLAEGKLSQLRSKLVKGATLAQLASSLKMDEY 92
>UniRef50_A5CEW8 Cluster: Ribonuclease III; n=1; Orientia
tsutsugamushi Boryong|Rep: Ribonuclease III - Orientia
tsutsugamushi (strain Boryong) (Rickettsia
tsutsugamushi)
Length = 251
Score = 63.3 bits (147), Expect = 8e-09
Identities = 33/91 (36%), Positives = 52/91 (57%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
+ L+ + Y F LL++A+TH S ++ T YQRLEFLGD IL+ +I+ L+++
Sbjct: 25 DALQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNFSH 84
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKY 358
++ G L R+ LV N +A + HKY
Sbjct: 85 YNEGKLAKSRAFLVCNESICLIAQKINLHKY 115
>UniRef50_P0C5H7 Cluster: Dicer-like protein 2 [Includes:
Endoribonuclease dcl2 (EC 3.1.26.-); ATP-dependent
helicase dcl2 (EC 3.6.1.-)]; n=15; Eurotiomycetidae|Rep:
Dicer-like protein 2 [Includes: Endoribonuclease dcl2 (EC
3.1.26.-); ATP-dependent helicase dcl2 (EC 3.6.1.-)] -
Emericella nidulans (Aspergillus nidulans)
Length = 1429
Score = 63.3 bits (147), Expect = 8e-09
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E LE + Y F+D++LL++A+TH S + YQRLEFLGDA+LD LI +
Sbjct: 1057 ENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVE 1116
Query: 266 HSPGALTDLRSALVNNTIFATL 331
G +T ++ A+VN + A L
Sbjct: 1117 CQQGEMTKIKHAIVNGHLLAFL 1138
Score = 40.3 bits (90), Expect = 0.065
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 3/186 (1%)
Frame = +2
Query: 11 KLPRSPLL--RYVEDPEGELEKMVSGYEQLERVLQ-YRFRDRSLLLQAMTHASHHRNVLT 181
+LP S + R++ LE + E VL+ +F+D ++ A+T T
Sbjct: 849 RLPASETVFGRFIPVILDRLEAALVATRLCETVLRDIQFQDLRHVITAITMPL--AQAPT 906
Query: 182 DCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYF 361
D YQR EF GD++L + + L+ + G LT+ ALV N A G Y
Sbjct: 907 D-YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAY- 964
Query: 362 RHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAI 541
++ ++ + ISE+ Y A K L D+ E++ GA
Sbjct: 965 ---------IISNRFTPRKWSAPLISEKLYASASTRSMSA------KVLADVVEALIGAA 1009
Query: 542 FLDSGM 559
++D G+
Sbjct: 1010 YIDGGL 1015
>UniRef50_A7EYF3 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 1515
Score = 62.9 bits (146), Expect = 1e-08
Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHL--YEDK 259
+ +E++L Y F +SLL++AMTH S+ T +RLEFLGDAILD +I + YE +
Sbjct: 1183 QPIEQILAYTFTKKSLLVEAMTHPSYING--TQSLERLEFLGDAILDNIIVTAMWSYETE 1240
Query: 260 RCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG 379
H L LRSALVN A L +Y ++ G
Sbjct: 1241 LSHFQMHL--LRSALVNADFLAFLCMEMSIEQYVTDLTEG 1278
Score = 50.8 bits (116), Expect = 5e-05
Identities = 44/146 (30%), Positives = 66/146 (45%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
DR L+ A+THAS+ LT YQRLEFLGD+IL + L + G L+ ++
Sbjct: 1015 DRGLVQTAITHASYS---LTSNYQRLEFLGDSILKLCTSVQLISEYPLWPEGYLSAMKDR 1071
Query: 302 LVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQA 481
+V+N+ + A G +Y + KK+ + E YL EQ
Sbjct: 1072 IVSNSRSSRAAVELGLDEYI---------ITKKFT---GSKWRPMYVEDYL---KTTEQK 1116
Query: 482 EDVEVPKALGDLFESVAGAIFLDSGM 559
K L D+ E++ GA +D G+
Sbjct: 1117 SRQMSSKVLSDVVEALIGACMVDGGI 1142
>UniRef50_Q0F3I4 Cluster: Ribonuclease III; n=1; Mariprofundus
ferrooxydans PV-1|Rep: Ribonuclease III - Mariprofundus
ferrooxydans PV-1
Length = 229
Score = 61.3 bits (142), Expect = 3e-08
Identities = 29/77 (37%), Positives = 51/77 (66%)
Frame = +2
Query: 77 SGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYED 256
+G +QL++V+ YRF + +LL +A+TH S R+ ++ +RLEFLGDA+L ++ +L++
Sbjct: 6 TGLQQLQQVIGYRFNNPALLKRALTHCSALRSAVSGDLERLEFLGDAVLGLVVAEYLHQS 65
Query: 257 KRCHSPGALTDLRSALV 307
G L+ +R+ LV
Sbjct: 66 FPEEPEGQLSRMRANLV 82
>UniRef50_Q67PF5 Cluster: Ribonuclease 3; n=1; Symbiobacterium
thermophilum|Rep: Ribonuclease 3 - Symbiobacterium
thermophilum
Length = 235
Score = 61.3 bits (142), Expect = 3e-08
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +2
Query: 104 LQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGA 280
L Y FRD SLLL+A+TH ++ + + +RLEFLGD++L +I HLYE G
Sbjct: 18 LGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPEGE 77
Query: 281 LTDLRSALVNNTIFATLAARHGFHKYFR 364
LT +R+A+V A A G ++ R
Sbjct: 78 LTKIRAAVVCEPSLAERARVLGIGRHMR 105
>UniRef50_Q608M7 Cluster: Ribonuclease 3; n=121; Proteobacteria|Rep:
Ribonuclease 3 - Methylococcus capsulatus
Length = 230
Score = 60.9 bits (141), Expect = 4e-08
Identities = 36/88 (40%), Positives = 50/88 (56%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLY 250
M+ +E L R L FRD LL A+TH S V + RLEFLGD++L +++T +LY
Sbjct: 1 MIRSHEHLARKLGIPFRDPGLLRNALTHRSAE-GVNNE---RLEFLGDSVLGFVVTEYLY 56
Query: 251 EDKRCHSPGALTDLRSALVNNTIFATLA 334
+ G L+ LR+ LVN T A +A
Sbjct: 57 QRFPSADEGVLSRLRATLVNETSLARIA 84
>UniRef50_Q2U0L3 Cluster: DsRNA-specific nuclease Dicer and related
ribonucleases; n=1; Aspergillus oryzae|Rep:
DsRNA-specific nuclease Dicer and related ribonucleases -
Aspergillus oryzae
Length = 1256
Score = 60.5 bits (140), Expect = 6e-08
Identities = 33/88 (37%), Positives = 48/88 (54%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
LE +L Y F D+SL +++MTH S T Y+RL FLG I++ ++ R+L+ K S
Sbjct: 1018 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 1077
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHK 355
L L+SA+ NN A L + K
Sbjct: 1078 SKRLQSLKSAVTNNMFLAFLCLTFHWEK 1105
Score = 41.9 bits (94), Expect = 0.021
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
++ + F+GDAI+ +LITR L+ G LT ++ ++V++T A GF Y
Sbjct: 865 FRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVKDSIVSDTGLAAALCHSGFGSY 921
>UniRef50_Q1DW80 Cluster: Dicer-like protein 2 [Includes:
Endoribonuclease DCL2 (EC 3.1.26.-); ATP-dependent
helicase DCL2 (EC 3.6.1.-)]; n=2; Coccidioides
immitis|Rep: Dicer-like protein 2 [Includes:
Endoribonuclease DCL2 (EC 3.1.26.-); ATP-dependent
helicase DCL2 (EC 3.6.1.-)] - Coccidioides immitis
Length = 1478
Score = 60.5 bits (140), Expect = 6e-08
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +2
Query: 29 LLRYVEDP-EGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEF 205
+L + ED E M+S ++E ++ Y F+ + LLL A+TH S + YQRLEF
Sbjct: 1168 ILHHQEDSFSDENNNMLS---EIEGLVGYTFKKKPLLLAAVTHPSSKGS--GHSYQRLEF 1222
Query: 206 LGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATL 331
+GD+ILD ++ + L+E RC + +R+ALVN A L
Sbjct: 1223 VGDSILDIIVVQELFESPRCFHHFDMHLMRTALVNADFLAFL 1264
Score = 39.1 bits (87), Expect = 0.15
Identities = 39/147 (26%), Positives = 65/147 (44%)
Frame = +2
Query: 116 FRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLR 295
F + SL+L A++ ++ YQRLEFLGD++L + L D G LT +
Sbjct: 1012 FSNLSLVLTAISSSAARE---ASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRK 1068
Query: 296 SALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEME 475
+V+N A A + G K+ + K + + S + +H I+ +M
Sbjct: 1069 GNIVSNGYLANAALQTGLDKFI---------LTKPFTGAKWR--PSYNTDH--INTGDMT 1115
Query: 476 QAEDVEVPKALGDLFESVAGAIFLDSG 556
+ K L D+ E++ GA +D G
Sbjct: 1116 EPTREMSTKVLADVVEALIGAANIDGG 1142
>UniRef50_Q8EW40 Cluster: Ribonuclease III; n=1; Mycoplasma
penetrans|Rep: Ribonuclease III - Mycoplasma penetrans
Length = 244
Score = 50.8 bits (116), Expect(2) = 8e-08
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +2
Query: 131 LLLQAMTHASHHRNVLTD-CYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
L ++A+TH S++ YQRLEFLGDA++ LI+ L+++K +T++R LV
Sbjct: 31 LYVEALTHNSYNNEKKVGYTYQRLEFLGDAVISKLISEFLFKNKSLDEQ-KMTEIRKNLV 89
Query: 308 NNTIFATLAARHGFHKYFRHMSPGLN 385
N+ IF + G Y + G+N
Sbjct: 90 NSEIFKKASEELGLLDY-AFIGKGIN 114
Score = 29.1 bits (62), Expect(2) = 8e-08
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 491 EVPKALGDLFESVAGAIFLDSG 556
+ K DLFE+ AGAIF+D G
Sbjct: 118 DTKKIKADLFEAFAGAIFIDKG 139
>UniRef50_A0LGM1 Cluster: Ribonuclease III; n=1; Syntrophobacter
fumaroxidans MPOB|Rep: Ribonuclease III -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 242
Score = 59.7 bits (138), Expect = 1e-07
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Frame = +2
Query: 68 KMVSGYEQLERVLQYRFRDRSLLLQAMTHASH-HRNVLTD--CYQRLEFLGDAILDYLIT 238
K G E L+ +L YRF D LL +A+ H S+ H N D + LEFLGDA+L I+
Sbjct: 2 KPSDGLEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAIS 61
Query: 239 RHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
L E ++ G L+ LRSA+VN +A +Y
Sbjct: 62 HFLLEQFPDYNEGELSRLRSAIVNERELTRIAVELNLGEY 101
>UniRef50_Q8RGX3 Cluster: Ribonuclease 3; n=3; Fusobacterium
nucleatum|Rep: Ribonuclease 3 - Fusobacterium nucleatum
subsp. nucleatum
Length = 234
Score = 59.7 bits (138), Expect = 1e-07
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHAS---HHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 262
LE L Y F DR+LL A+ H S + +RLE LGDA+LD ++ +LY+ +
Sbjct: 7 LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQTNERLELLGDAVLDLIVAEYLYKSYK 66
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
S G + L++ +V+ I A ++ + G K+
Sbjct: 67 NASEGPIAKLKAMIVSEPILAKISRQIGVGKF 98
>UniRef50_Q9KA05 Cluster: Ribonuclease 3; n=38; Bacilli|Rep:
Ribonuclease 3 - Bacillus halodurans
Length = 263
Score = 59.7 bits (138), Expect = 1e-07
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Frame = +2
Query: 83 YEQLERVLQYRFRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
+++L R L F ++ LL+QA TH+S+ HR +RLEFLGDA+L+ ++++LY+
Sbjct: 35 FDELLRTLNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYK 94
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLA 334
S G +T LR+++V A LA
Sbjct: 95 AFEQMSEGDMTKLRASIVCEPSLAQLA 121
Score = 34.3 bits (75), Expect = 4.3
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +2
Query: 329 LAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHY----LIHEDEMEQAEDVEV 496
LA +K F MS G L+ + + E H+ L+ + E E +
Sbjct: 86 LAVSQYLYKAFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELVLLGKGE-EMTGGRKR 144
Query: 497 PKALGDLFESVAGAIFLDSGM 559
P L D+FES GA++LD GM
Sbjct: 145 PALLADVFESFVGALYLDQGM 165
>UniRef50_Q3SD86 Cluster: Dicer-like ribonuclease with helicase and
Rnase III domains; n=1; Paramecium tetraurelia|Rep:
Dicer-like ribonuclease with helicase and Rnase III
domains - Paramecium tetraurelia
Length = 1797
Score = 59.3 bits (137), Expect = 1e-07
Identities = 38/147 (25%), Positives = 71/147 (48%)
Frame = +2
Query: 146 MTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFA 325
+T + +N + Y+RLEFLGD++LD ++ L ++ L + +V N A
Sbjct: 1567 LTQLNQQQNRIDMSYERLEFLGDSVLDSVVVEWLVKEFNKEKVEDLALKKQCVVCNKALA 1626
Query: 326 TLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKA 505
+ + ++ H P L++V + + + I + + ++D + + K
Sbjct: 1627 LVTLHYKLDQFLLH--PTLHKVAHE----NHQTLNKIKQMYNEYYDDISKMYTSEPIIKI 1680
Query: 506 LGDLFESVAGAIFLDSGMSLGRRVEVV 586
LGD+FES+ GAIF+DS + +VV
Sbjct: 1681 LGDVFESIVGAIFVDSSFNYDLTKQVV 1707
Score = 33.1 bits (72), Expect = 9.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHAS 160
LE ++ Y+F D+S+L+QA+TH S
Sbjct: 1503 LENIIGYKFNDQSILIQAITHQS 1525
>UniRef50_A6SDY7 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 1398
Score = 59.3 bits (137), Expect = 1e-07
Identities = 36/98 (36%), Positives = 53/98 (54%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
+E++L Y F +SLL++AMTH S+ T +RLEFLGD+ILD +I ++ S
Sbjct: 1090 VEQILAYTFTKKSLLVEAMTHPSYTSG--TQSLERLEFLGDSILDNIIVTAMWSHSTPLS 1147
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLN 385
+ LRSALVN A L + +++ G N
Sbjct: 1148 HFHMHLLRSALVNADFLAFLCMEMSIDQNVTNLTEGKN 1185
Score = 47.2 bits (107), Expect = 6e-04
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
D+SL+ A+THAS+ L YQRLEFLGD+IL + L + G L+ ++
Sbjct: 966 DQSLIQTAITHASYS---LDSNYQRLEFLGDSILKLCTSVQLVAEHLDWHEGYLSAMKDR 1022
Query: 302 LVNNTIFATLAARHGFHKY 358
+V+N+ + AA G +Y
Sbjct: 1023 IVSNSRSSRAAAEVGLDEY 1041
>UniRef50_Q6MLR5 Cluster: Ribonuclease 3; n=1; Bdellovibrio
bacteriovorus|Rep: Ribonuclease 3 - Bdellovibrio
bacteriovorus
Length = 234
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Frame = +2
Query: 80 GYEQLERVLQYRFRDRSLLLQAMTH---ASHHRNVLTDCYQRLEFLGDAILDYLITRHLY 250
G + LE + ++F++ +LL +A+TH A+ RN + + ++LEFLGDA+LD ++ LY
Sbjct: 5 GRKSLEERVGHQFKNPALLERALTHKSFANELRNTV-EHNEKLEFLGDAVLDLVVGEFLY 63
Query: 251 EDKRCHSPGALTDLRSALVNNTIFATLAARHGFHK 355
E + G L+ R+++VN + + LA G +K
Sbjct: 64 EKFPTDTEGGLSKKRASIVNEEVLSELALEMGLNK 98
>UniRef50_Q2GNP6 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized protein
- Chaetomium globosum (Soil fungus)
Length = 1227
Score = 58.8 bits (136), Expect = 2e-07
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +2
Query: 38 YVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDA 217
Y E P+ E + QLE ++ Y F ++LL++AMTH S + + RLEFLGDA
Sbjct: 1101 YNEAPDDE--PLPRTMRQLESLVGYTFTKKALLVEAMTHPSCNGPGIRASLDRLEFLGDA 1158
Query: 218 ILDYLITRHLY--EDKRCHSPGALTDLRSALVNNTIFATL 331
ILDY++ L+ D +L LR+ALVN I L
Sbjct: 1159 ILDYVVVNKLFAISDPAPLENSSLHLLRTALVNADILGFL 1198
Score = 48.0 bits (109), Expect = 3e-04
Identities = 45/155 (29%), Positives = 72/155 (46%)
Frame = +2
Query: 98 RVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPG 277
R+ Q D SL++ A+T AS R TD Y+R+EFLGD+IL + T + G
Sbjct: 937 RLEQTGITDLSLIVTAIT-ASAARGP-TD-YERIEFLGDSILKFCTTINCSATYLKFPEG 993
Query: 278 ALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLI 457
L+ L+ +V+N+ A G +Y H + L++ YV+ EN S +E +
Sbjct: 994 CLSPLKDKIVSNSRLFRAAVDFGLDRYIIHKAFTLHKWRPTYVEDLIENPPSATETRRI- 1052
Query: 458 HEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMS 562
K + D+ E++ G F+ G+S
Sbjct: 1053 ------------STKIIADVVEALIGTAFVSGGIS 1075
>UniRef50_Q7VIA9 Cluster: Ribonuclease 3; n=27;
Epsilonproteobacteria|Rep: Ribonuclease 3 - Helicobacter
hepaticus
Length = 240
Score = 58.8 bits (136), Expect = 2e-07
Identities = 33/81 (40%), Positives = 49/81 (60%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
LE+ L Y F+++ LLL+A+TH S + + RLEFLGDA+LD L+ +L++
Sbjct: 13 LEKKLGYVFQNQQLLLEALTHKSCKKQYNNE---RLEFLGDAVLDLLVGEYLFKKFPLAK 69
Query: 272 PGALTDLRSALVNNTIFATLA 334
G L+ LR+ +VN F LA
Sbjct: 70 EGELSKLRACIVNEKGFMKLA 90
>UniRef50_Q7WD32 Cluster: Ribonuclease 3; n=62; Proteobacteria|Rep:
Ribonuclease 3 - Bordetella bronchiseptica (Alcaligenes
bronchisepticus)
Length = 256
Score = 58.8 bits (136), Expect = 2e-07
Identities = 35/91 (38%), Positives = 51/91 (56%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
LE L +RF D++LL QA+TH SH +RLEFLGD++L++++ L+E
Sbjct: 9 LETRLDHRFGDKALLEQALTHRSHGARH----NERLEFLGDSVLNFVVAAMLFERYGKLD 64
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFR 364
G L+ LR+ LV A +A R +Y R
Sbjct: 65 EGDLSRLRANLVKQASLADIAQRLDLSQYLR 95
>UniRef50_Q3AC58 Cluster: Ribonuclease 3; n=1; Carboxydothermus
hydrogenoformans Z-2901|Rep: Ribonuclease 3 -
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 235
Score = 58.4 bits (135), Expect = 2e-07
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 262
LE++L + F + S+LL A+TH S+ H + +RLEFLGDA+L+ I+ +L+
Sbjct: 9 LEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTFP 68
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
S G LT LRS LV LA + K+ R
Sbjct: 69 QKSEGDLTKLRSRLVCAESLYELAFKINLDKFLR 102
>UniRef50_Q7UGZ7 Cluster: Ribonuclease 3; n=3;
Planctomycetaceae|Rep: Ribonuclease 3 - Rhodopirellula
baltica
Length = 266
Score = 58.0 bits (134), Expect = 3e-07
Identities = 33/91 (36%), Positives = 52/91 (57%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
V+ E+ + +L Y FRD LL A+THAS + L +RLEFLGD++L + L+
Sbjct: 31 VAKIERCQEILGYDFRDLDLLRSALTHASGASHRLAS-NERLEFLGDSVLGLTVCEWLFN 89
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHG 346
+ +S G LT ++SA+V+ +A + G
Sbjct: 90 EYPEYSEGDLTKIKSAVVSRRSCGKVACKLG 120
>UniRef50_Q98R47 Cluster: RIBONUCLEASE III; n=1; Mycoplasma
pulmonis|Rep: RIBONUCLEASE III - Mycoplasma pulmonis
Length = 241
Score = 57.6 bits (133), Expect = 4e-07
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 119 RDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH--SPGALTDL 292
+++++ QA TH + H Y+ LEFLGDAIL ++ +++++ + +PG T +
Sbjct: 35 KEKNIFFQAFTHTTFHNLYKAKSYEMLEFLGDAILQKNVSEYIFKNTESNKINPGTATLI 94
Query: 293 RSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYL 454
RS LVN T + LA K+ + P E L K K+ + S+ Y+
Sbjct: 95 RSKLVNKTCLSNLAKELKLDKFL--LLPKGQEELVKNEKVLSDLFESLCAAIYI 146
>UniRef50_Q3E502 Cluster: Ribonuclease III, bacterial; n=2;
Chloroflexus|Rep: Ribonuclease III, bacterial -
Chloroflexus aurantiacus J-10-fl
Length = 244
Score = 57.6 bits (133), Expect = 4e-07
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHAS------HHRNVLTDCYQRLEFLGDAILDYLITRHLY 250
+LER + FRDR+LL A H S H N LTD +RLEFLGD++L ++ T L+
Sbjct: 7 ELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTD-NERLEFLGDSVLHFVTTTWLF 65
Query: 251 EDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
E LT+ R+ALV+ A AA+ +Y
Sbjct: 66 ETFPDQDEATLTNWRAALVSTKGLAECAAQFNLGQY 101
>UniRef50_Q7SCC1 Cluster: Dicer-like protein 2 [Includes:
Endoribonuclease dcl-2 (EC 3.1.26.-); ATP-dependent
helicase dcl-2 (EC 3.6.1.-)]; n=2; Neurospora crassa|Rep:
Dicer-like protein 2 [Includes: Endoribonuclease dcl-2
(EC 3.1.26.-); ATP-dependent helicase dcl-2 (EC 3.6.1.-)]
- Neurospora crassa
Length = 1539
Score = 57.2 bits (132), Expect = 5e-07
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHAS-HHRNVLTDCYQRLEFLGDAILDYLITRHL 247
E LE+ + Y F +SLL++AMTH S CY+RLEFLGDAILD ++ + L
Sbjct: 1159 EPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRL 1213
>UniRef50_Q8KAN7 Cluster: Ribonuclease 3; n=9; Chlorobiaceae|Rep:
Ribonuclease 3 - Chlorobium tepidum
Length = 272
Score = 47.6 bits (108), Expect(2) = 7e-07
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +2
Query: 128 SLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
+L +++ H H + QRLEFLGDA+LD LI+ HL++ G L+ R+ +V
Sbjct: 51 ALTHRSVLHDHHSEEHKPESNQRLEFLGDAVLDLLISEHLFKQFPGSDEGHLSSNRAKIV 110
Query: 308 NNTIFATLA 334
N A A
Sbjct: 111 NRKSLAAFA 119
Score = 29.1 bits (62), Expect(2) = 7e-07
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 443 EHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRR 574
EH +I E +Q AL D E++ GAI+LD G++ R
Sbjct: 126 EHLIIGESADKQKIRTS-ESALADALEALVGAIYLDQGLAGAER 168
>UniRef50_Q1Q4S0 Cluster: Similar to ribonuclease III; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Similar to
ribonuclease III - Candidatus Kuenenia stuttgartiensis
Length = 236
Score = 56.8 bits (131), Expect = 7e-07
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Frame = +2
Query: 95 ERVLQYRFRDRSLLLQAMTHASHH-RNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
+ ++ Y F+ LL +A+TH S N ++ +RLEFLGDA+L +I+ +LY+ +S
Sbjct: 17 QNIIGYSFKKMLLLEKALTHTSCRVENNFSN--ERLEFLGDAVLGMIISDYLYKTMPHYS 74
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNE 388
G LT+++S +V+ + A + G K F + GLN+
Sbjct: 75 EGELTNVKSVVVSQSTLAKVGMEAGL-KEFLLVGRGLND 112
>UniRef50_Q0YHA5 Cluster: Ribonuclease III; n=1; Geobacter sp.
FRC-32|Rep: Ribonuclease III - Geobacter sp. FRC-32
Length = 238
Score = 56.8 bits (131), Expect = 7e-07
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Frame = +2
Query: 65 EKMVSGYEQLERVLQYRFRDRSLLLQAMTHAS---HHRNVLTDCYQRLEFLGDAILDYLI 235
E+ LE+++ Y F D+SLL++A+TH S + QRLEFLGDA++ ++
Sbjct: 3 EETFKSIAALEKLINYDFTDKSLLVEALTHPSFVNESGGKVRQDNQRLEFLGDAVVGLVL 62
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLA 334
+ L+ G LT LR++LV+ A LA
Sbjct: 63 SHDLFSRFPDSREGELTKLRASLVDEASLAILA 95
>UniRef50_Q8XJN8 Cluster: Ribonuclease 3; n=20; Bacteria|Rep:
Ribonuclease 3 - Clostridium perfringens
Length = 237
Score = 56.8 bits (131), Expect = 7e-07
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY-QRLEFLGDAILDYLITRHLYEDKRC 265
++E+++ F ++ +L+ A+TH+S+ Y +RLEFLGD++L +T++L+ + +
Sbjct: 8 EVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKD 67
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG 379
S G LT +R+ +V ++ KY R MS G
Sbjct: 68 KSEGELTKIRALVVCENSLHKVSKNLSLGKYIR-MSKG 104
>UniRef50_Q5L6E3 Cluster: Ribonuclease 3; n=8; Chlamydiaceae|Rep:
Ribonuclease 3 - Chlamydophila abortus
Length = 237
Score = 56.8 bits (131), Expect = 7e-07
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 2/168 (1%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNV--LTDCYQRLEFLGDAILDYLITRHLYEDK 259
+++E L + F LL+ A+TH S+ +T+ +RLEFLGDA+L ++T HL+
Sbjct: 8 KEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVTEHLFLLF 67
Query: 260 RCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSIS 439
G L+ R+AL+N G +Y ++ K +IQ E G +
Sbjct: 68 PSMDEGTLSTARAALINAVSCCQYTDALGLGEYL---------LIGKGERIQNERGKT-- 116
Query: 440 EEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEV 583
A +LFE++ GA++LD G++ R++ V
Sbjct: 117 --------------------SAYANLFEAILGAVYLDGGLAPARQITV 144
>UniRef50_A4GHU1 Cluster: Ribonuclease III; n=1; uncultured marine
bacterium EB0_39H12|Rep: Ribonuclease III - uncultured
marine bacterium EB0_39H12
Length = 218
Score = 43.2 bits (97), Expect(2) = 9e-07
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 104 LQYRFRDRSLLLQAMTHAS--HHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPG 277
L+Y F+D L A+TH S H N +RLEFLGDAIL+ ++ L+ G
Sbjct: 9 LEYSFQDEELFQLALTHKSLSSHNN------ERLEFLGDAILNLYVSERLFNTYGNLKEG 62
Query: 278 ALTDLRSALVN 310
LT ++++V+
Sbjct: 63 KLTRFKASIVS 73
Score = 33.1 bits (72), Expect(2) = 9e-07
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 410 IQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRV 577
+ EN H ++ L + ++ + E ++ LG++ E++ GAIFLDS S + V
Sbjct: 72 VSRENLHRVAINLELSNHIKLGKGESLQGNSILGNVLEALIGAIFLDSDYSETKNV 127
>UniRef50_UPI00015B6129 Cluster: PREDICTED: similar to ribonuclease
iii; n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
ribonuclease iii - Nasonia vitripennis
Length = 1381
Score = 56.4 bits (130), Expect = 9e-07
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHAS----------HHRNVLTDCYQRLEFLGDAILDYLI 235
+ LE+ L Y+F++R LL A+TH S H RN LT+C R GD + Y+
Sbjct: 789 DMLEQTLDYKFKNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYMN 848
Query: 236 TRHLYEDKRCHSP---GALTDLRSALVNNTIF-----ATLAARHGFHKYFRHMSPGLNEV 391
TR + + GA + S++ +N A + H + HM P L E
Sbjct: 849 TRKRGINTLINIMSRFGAKKETESSIAHNERLEFLGDAVVEFLTSIHLF--HMFPDLEEG 906
Query: 392 -LKKYVKIQEENGH------SISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLD 550
L Y +N H ++ E Y+++ + D+E+ A+ + FE++ GA+FLD
Sbjct: 907 GLATYRAAIVQNQHLAVLAKKLNLEQYMLYAHGSDLCHDLELRHAMANCFEALMGALFLD 966
Query: 551 SGMSLGRRV 577
G+ + V
Sbjct: 967 GGIRIADTV 975
Score = 54.8 bits (126), Expect = 3e-06
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Frame = +2
Query: 17 PRSPLLRYVEDPEGELEKMVSGYEQLERVLQYR------FRDRSLLLQAMTHAS-HHRNV 175
P+ PL ++P G+ + + +E L+++ ++ F LL +A T S + N+
Sbjct: 995 PKHPLQE--QEPTGD-RQWIPSFELLQKLTKFEEGIGVEFSHIRLLARAFTDRSIGYTNL 1051
Query: 176 LTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHK 355
QRLEFLGD +L +++ +LY+ H G L+ LRS+LVNN A + G +
Sbjct: 1052 TLGSNQRLEFLGDTVLQLIVSEYLYKFFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQ 1111
Query: 356 YFRHMSP 376
Y + +P
Sbjct: 1112 YALYGNP 1118
>UniRef50_Q2GCL4 Cluster: Ribonuclease III; n=1; Neorickettsia
sennetsu str. Miyayama|Rep: Ribonuclease III -
Neorickettsia sennetsu (strain Miyayama)
Length = 222
Score = 56.4 bits (130), Expect = 9e-07
Identities = 33/93 (35%), Positives = 52/93 (55%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E+L+ +L F+++ LL++A+TH S + Y+RLEFLGDA+L+ +I LY+
Sbjct: 4 EELQSLLGVYFKNKDLLVEALTHPSVEK---CPSYERLEFLGDAVLNLVIASMLYDLFPG 60
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
G L+ +SAL+ A LA + Y R
Sbjct: 61 DPEGRLSHRQSALICKNTLAMLARQMNLGDYIR 93
>UniRef50_A7B5M4 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 252
Score = 56.4 bits (130), Expect = 9e-07
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +2
Query: 65 EKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTD---CYQRLEFLGDAILDYLI 235
+ M ++LE+ + Y F+D SLL QAM H+S+ + C +RLEFLGDA+L+ +
Sbjct: 22 KNMKKNLKELEKKIGYEFQDFSLLEQAMMHSSYTNEKHLEKYHCNERLEFLGDAVLELVS 81
Query: 236 TRHLYEDKRCHSPGALTDLRSALV 307
+ L+ + S G LT R+++V
Sbjct: 82 SEFLFLESPKVSEGKLTKTRASMV 105
>UniRef50_A1AWQ6 Cluster: Ribonuclease III; n=2; sulfur-oxidizing
symbionts|Rep: Ribonuclease III - Ruthia magnifica
subsp. Calyptogena magnifica
Length = 221
Score = 56.4 bits (130), Expect = 9e-07
Identities = 33/84 (39%), Positives = 51/84 (60%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
++L++ + Y+F+D SLL A+TH S +N +RLEFLGD+IL +I++ LY+
Sbjct: 2 KKLQKKINYQFKDLSLLKLALTHCSMGKNN----NERLEFLGDSILGVIISKELYQRFPN 57
Query: 266 HSPGALTDLRSALVNNTIFATLAA 337
G L+ LRS LV + L+A
Sbjct: 58 IDEGKLSRLRSHLVRDQTLTQLSA 81
>UniRef50_Q72C44 Cluster: Ribonuclease 3; n=4;
Desulfovibrionaceae|Rep: Ribonuclease 3 - Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB8303)
Length = 253
Score = 56.4 bits (130), Expect = 9e-07
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHAS--HHRNVLTDCYQRLEFLGDAILDYLITRHL 247
V ++L++ + +RF D LLL AMTH+S + + V + +RLEFLGDA+L+ ++ L
Sbjct: 26 VKPVDELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEEL 85
Query: 248 YEDKRCHSPGALTDLRSALVN 310
+ G LT +RS LV+
Sbjct: 86 FRRFPSAREGDLTRMRSRLVS 106
>UniRef50_A6C1C3 Cluster: Ribonuclease III; n=1; Planctomyces maris
DSM 8797|Rep: Ribonuclease III - Planctomyces maris DSM
8797
Length = 247
Score = 56.0 bits (129), Expect = 1e-06
Identities = 32/91 (35%), Positives = 49/91 (53%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E+ ++ L YRF D LL +TH S + + D +RLEFLGDAIL ++ L++
Sbjct: 15 EECQQNLGYRFVDCELLKSCLTHTSAAKTRM-DSNERLEFLGDAILGSIVCEKLFDQFPN 73
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKY 358
G LT ++SA+V+ LA G ++
Sbjct: 74 APEGELTRIKSAVVSRNTCTRLAREKGLDRF 104
>UniRef50_Q74AX1 Cluster: Ribonuclease 3; n=4; Geobacter|Rep:
Ribonuclease 3 - Geobacter sulfurreducens
Length = 248
Score = 56.0 bits (129), Expect = 1e-06
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY---QRLEFLGDAILDYLITRHLYED 256
E LE + YRF DR L +A+TH S V + +RLEF GDAIL + I + L
Sbjct: 17 EGLETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRH 76
Query: 257 KRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
GAL ++SALV A LAA Y R
Sbjct: 77 YPESREGALARMKSALVGEETLADLAAAVELGSYLR 112
>UniRef50_A5EV51 Cluster: Ribonuclease III; n=1; Dichelobacter
nodosus VCS1703A|Rep: Ribonuclease III - Dichelobacter
nodosus (strain VCS1703A)
Length = 233
Score = 55.6 bits (128), Expect = 2e-06
Identities = 40/124 (32%), Positives = 63/124 (50%)
Frame = +2
Query: 83 YEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 262
++ LE L Y F++ LL +A+TH R+ D +R E+LGDA+L+ +I+ LY
Sbjct: 9 WQLLEHALGYSFQNPELLQRALTH----RSFSADHNERFEYLGDALLETVISVALYRRYP 64
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISE 442
G LT LR+A+V ++ A +A + +Y R S L K+ I + +I
Sbjct: 65 ESPEGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELKSGGKRRESILADAVEAIIA 124
Query: 443 EHYL 454
YL
Sbjct: 125 AVYL 128
>UniRef50_A6PN64 Cluster: Ribonuclease III; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribonuclease III -
Victivallis vadensis ATCC BAA-548
Length = 232
Score = 55.2 bits (127), Expect = 2e-06
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASHH-RNVLTDCYQRLEFLGDAILDYLITRHL 247
M E+L++ L + + L +A+TH S+ N L QRLEFLGDA+L+ ++T +L
Sbjct: 1 MARNIEELKKRLGFAGPWSNRLAEAVTHRSYAVENNLGYDNQRLEFLGDAVLEIILTEYL 60
Query: 248 YEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
+ + G +T +RSALV A LA R +Y
Sbjct: 61 FHLYPDAAEGEMTKIRSALVREPALARLARRFELGEY 97
>UniRef50_A4J683 Cluster: Ribonuclease III; n=1; Desulfotomaculum
reducens MI-1|Rep: Ribonuclease III - Desulfotomaculum
reducens MI-1
Length = 246
Score = 55.2 bits (127), Expect = 2e-06
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHAS--HHRNVLTDCY-QRLEFLGDAILDYLITRHLYEDK 259
+L+ L +++ + +LL+QA+TH+S H C+ QRLEFLGDA+L+ +I+ HLY+
Sbjct: 10 RLKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKMF 69
Query: 260 RCHSPGALTDLRSALVNNTIFATLA 334
+ G LT +R++ V A +A
Sbjct: 70 PDRTEGELTKMRASSVCEPSLAKVA 94
Score = 33.1 bits (72), Expect = 9.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 473 EQAEDVEVPKALGDLFESVAGAIFLDSGMSLGR 571
E++ E P L D FE++ GAI+LD G+ + R
Sbjct: 110 ERSGGRERPSILADAFEALLGAIYLDQGLEISR 142
>UniRef50_Q5FJJ7 Cluster: Ribonuclease 3; n=8; Lactobacillus|Rep:
Ribonuclease 3 - Lactobacillus acidophilus
Length = 228
Score = 55.2 bits (127), Expect = 2e-06
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDC---YQRLEFLGDAILDYLITRHLYEDK 259
+L+ F + LL +A TH+S+ D Y++LEFLGDA+L+ ++ +LY
Sbjct: 9 KLKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRHY 68
Query: 260 RCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG 379
+ G LT LRS +V F+ A GF K H+ G
Sbjct: 69 PKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEI-HLGNG 107
>UniRef50_Q97IA4 Cluster: Ribonuclease 3; n=3; Clostridium|Rep:
Ribonuclease 3 - Clostridium acetobutylicum
Length = 230
Score = 55.2 bits (127), Expect = 2e-06
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 262
E+LE L F++ +LL+ A+TH+S+ + N + +RLEFLGDA+L I+ + ++
Sbjct: 8 EELESKLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYP 67
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG 379
S G LT R+ +V ++ R KY R MS G
Sbjct: 68 TISEGELTKKRALVVCGMSLHSIGERWQLGKYIR-MSHG 105
>UniRef50_Q1JXG8 Cluster: Ribonuclease III; n=1; Desulfuromonas
acetoxidans DSM 684|Rep: Ribonuclease III -
Desulfuromonas acetoxidans DSM 684
Length = 244
Score = 54.8 bits (126), Expect = 3e-06
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTD---CYQRLEFLGDAILDYLITRHLYEDK 259
Q E L YRF DR L A+ H S+ L D C +R EFLGDA+LD ++ +L+
Sbjct: 15 QFEERLGYRFTDRHYLQTALIHKSYANEQLRDPAACNERQEFLGDAVLDLVMADYLFCTY 74
Query: 260 RCHSPGALTDLRSALVNNTIFATLAAR 340
G L+ +RS LV+ A +A R
Sbjct: 75 PQLPEGELSRIRSELVSARALAKVARR 101
>UniRef50_A0L633 Cluster: Ribonuclease III; n=1; Magnetococcus sp.
MC-1|Rep: Ribonuclease III - Magnetococcus sp. (strain
MC-1)
Length = 246
Score = 54.8 bits (126), Expect = 3e-06
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Frame = +2
Query: 77 SGYEQLERVLQYRFRDRSLLLQAMTHASHHRN-------VLTDCYQRLEFLGDAILDYLI 235
SG E+LE+ L YRF LL A+TH S + V T +RLEFLGD++L+ ++
Sbjct: 8 SGLERLEQALDYRFTQSDLLQLALTHRSAPLDGSKAGEVVATTHNERLEFLGDSVLNLIV 67
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
+ LY+ G L+ R+ LVN + +A +Y R
Sbjct: 68 SHRLYKRFGEVPEGQLSQWRAMLVNTRSLSEVAKDLELGRYLR 110
>UniRef50_A1WT17 Cluster: Ribonuclease III; n=2;
Gammaproteobacteria|Rep: Ribonuclease III -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 234
Score = 54.4 bits (125), Expect = 4e-06
Identities = 29/87 (33%), Positives = 53/87 (60%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
+S E+L++ L Y+F + L +A+TH R+ +RLEFLGD++L++++ ++
Sbjct: 1 MSDLERLQQRLDYQFLELERLQEAVTH----RSAGGRHNERLEFLGDSVLNFVVAHEVFH 56
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLA 334
+ S G L+ LR++LVN + A +A
Sbjct: 57 RRPTDSEGTLSRLRASLVNRSSLAAIA 83
>UniRef50_A1HN82 Cluster: Ribonuclease III; n=4; Clostridia|Rep:
Ribonuclease III - Thermosinus carboxydivorans Nor1
Length = 243
Score = 54.4 bits (125), Expect = 4e-06
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +2
Query: 116 FRDRSLLLQAMTHASHHRNVL--TDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTD 289
F D LL QA+ H S+ V + +RLEFLGDA+L+ +I+ +LY + G LT
Sbjct: 24 FNDLGLLHQALVHTSYANEVKGGVEHNERLEFLGDAVLELIISEYLYRNFPELPEGELTK 83
Query: 290 LRSALVNNTIFATLAARHGFHKY 358
R+ LV A A+R G KY
Sbjct: 84 ARARLVCEPSLAQCASRLGLGKY 106
>UniRef50_A0NL28 Cluster: Ribonuclease III; n=3;
Leuconostocaceae|Rep: Ribonuclease III - Oenococcus oeni
ATCC BAA-1163
Length = 243
Score = 54.4 bits (125), Expect = 4e-06
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +2
Query: 116 FRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALT 286
F ++ LLL+A T ++ H YQRLEFLGD+++ ++ +L+ G LT
Sbjct: 28 FANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVADYLFTRYPDWEEGQLT 87
Query: 287 DLRSALVNNTIFATLAARHGFHKYFR 364
++R A+V + F+ A GF++Y R
Sbjct: 88 EMRIAMVQSKSFSHFARLAGFNRYIR 113
>UniRef50_P74368 Cluster: Ribonuclease 3; n=1; Synechocystis sp. PCC
6803|Rep: Ribonuclease 3 - Synechocystis sp. (strain PCC
6803)
Length = 231
Score = 54.4 bits (125), Expect = 4e-06
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 122 DRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRS 298
D L L+A+TH S+ + + T Y RLEFLGDA+L +++ R L+E + LT LRS
Sbjct: 11 DPQLKLEALTHRSYCNEHPGTPSYDRLEFLGDAVLGFVVGRILFERYPHFTEAELTRLRS 70
Query: 299 ALVNNTIFATLA 334
LVN A LA
Sbjct: 71 QLVNQNQLAYLA 82
>UniRef50_Q6ANV0 Cluster: Ribonuclease 3; n=1; Desulfotalea
psychrophila|Rep: Ribonuclease 3 - Desulfotalea
psychrophila
Length = 241
Score = 54.4 bits (125), Expect = 4e-06
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = +2
Query: 83 YEQLERVLQYRFRDRSLLLQAMTHASH--HRNVLTDCYQRLEFLGDAILDYLITRHLYED 256
+ + E+ + Y+F D LL +A+ H+S+ + +RLEF+GDA+LD ++ LY
Sbjct: 16 HAEFEKKINYKFIDLRLLQKALIHSSYAFEQAQAGKNNERLEFVGDAVLDLVVGNALYRR 75
Query: 257 KRCHSPGALTDLRSALVNNTIFATLAAR 340
G LT LR+ALVN AT+A +
Sbjct: 76 FPEMREGELTRLRAALVNEGHLATMARK 103
>UniRef50_O01326 Cluster: Ribonuclease 3; n=2; Caenorhabditis|Rep:
Ribonuclease 3 - Caenorhabditis elegans
Length = 1086
Score = 54.4 bits (125), Expect = 4e-06
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Frame = +2
Query: 44 EDPEGE-----LEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY-QRLEF 205
EDP+G+ + +S + LE L +F + LL +A T + N LT + QRLE+
Sbjct: 815 EDPQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEW 874
Query: 206 LGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
LGD++L +++ LY H G ++ LR++LV+N A + GF ++
Sbjct: 875 LGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEF 925
Score = 47.2 bits (107), Expect = 6e-04
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLA 334
+RLE+LGDA+++ +++ HLY H G L R+ALV N ATLA
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLA 738
Score = 35.1 bits (77), Expect = 2.5
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Frame = +2
Query: 95 ERVLQYRFRDRSLLLQAMTHAS----------HHRNVLTDC-YQRLEFLGDAILDYLIT- 238
E V++Y+F DR ++ A+ H+S H +N++T+C Y+R D +
Sbjct: 611 EEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKREKKRVAG 670
Query: 239 -RHLYEDKRCHSPGA--LTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK 409
L+ + S G L + R + + + + + H + H GL +
Sbjct: 671 IMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGL--ATYRTAL 728
Query: 410 IQEENGHSISE----EHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMS 562
+Q N ++++ + L + + E AL + FE+V AI+LD G++
Sbjct: 729 VQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783
>UniRef50_Q2H0G2 Cluster: Dicer-like protein 1 [Includes:
Endoribonuclease DCL1 (EC 3.1.26.-); ATP-dependent
helicase DCL1 (EC 3.6.1.-)]; n=1; Chaetomium
globosum|Rep: Dicer-like protein 1 [Includes:
Endoribonuclease DCL1 (EC 3.1.26.-); ATP-dependent
helicase DCL1 (EC 3.6.1.-)] - Chaetomium globosum (Soil
fungus)
Length = 1607
Score = 54.4 bits (125), Expect = 4e-06
Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNV-LTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
+ E + Y F LL A H ++ YQRLEFLGDA+LD L+
Sbjct: 1274 RFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFPG 1333
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
P LT+ + A+V+N LA GFH+ + + + + + +YV E+ S ++
Sbjct: 1334 ADPQWLTEHKMAMVSNQFLGCLAVYLGFHRAISYCASAIQKEITEYVTEIEDALQSARDD 1393
Query: 446 --------HYLIHEDEMEQAEDV---------EVPKALGDLFESVAGAIFLDSGMSLGR 571
H AE PK L D+ E+ GA+F+DS R
Sbjct: 1394 ASKTPCNRHATTPSPGDLPAESFARDFWVRCSRPPKCLPDVVEAYVGAVFVDSRYDFAR 1452
>UniRef50_A5V230 Cluster: Ribonuclease III; n=2; Roseiflexus|Rep:
Ribonuclease III - Roseiflexus sp. RS-1
Length = 237
Score = 54.0 bits (124), Expect = 5e-06
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASH-----HRNVLTDCYQRLEFLGDAILDYLI 235
M ++L L F D+ LL QA+TH+S + D +RLEFLGDAI+++L
Sbjct: 1 MRKSVDELSARLGVTFSDQRLLEQALTHSSFLNEHVEERMHLDSNERLEFLGDAIINFLA 60
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
R ++E G LT R+AL+ A A R+ Y
Sbjct: 61 ARLVFERFPDAGEGELTAWRTALIRTETLAGFAQRYNLGAY 101
>UniRef50_Q6LX27 Cluster: Ribonuclease III family:Double-stranded
RNA binding (DsRBD) domain; n=4; Methanococcus|Rep:
Ribonuclease III family:Double-stranded RNA binding
(DsRBD) domain - Methanococcus maripaludis
Length = 230
Score = 54.0 bits (124), Expect = 5e-06
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITR 241
M+ +E+L L +F D ++ +A H+S+ +N + +RLE+LGDA+LD +I+
Sbjct: 1 MMKNFEKLLSKLDIQFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLDLIISE 60
Query: 242 HLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
+L++ K S G ++ LR+ V + T A + F+ Y
Sbjct: 61 YLFK-KENLSEGEMSKLRAKYVCESALFTYAKKLKFNNY 98
>UniRef50_Q7KNF1 Cluster: Ribonuclease; n=8; Coelomata|Rep:
Ribonuclease - Drosophila melanogaster (Fruit fly)
Length = 1327
Score = 53.6 bits (123), Expect = 7e-06
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Frame = +2
Query: 14 LPRSPLLRYVEDPEGELEKMVSGYEQLERVLQY------RFRDRSLLLQAMTHASHHRNV 175
LP PL ++P G+ + Y L+ + ++ +F+ LL +A T S
Sbjct: 949 LPEHPLQE--QEPLGD-RSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTH 1005
Query: 176 LT-DCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFH 352
LT QRLEFLGD +L + + +LY H G L+ LRS+LVNN A + G
Sbjct: 1006 LTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMP 1065
Query: 353 KYFRHMSP 376
KY + +P
Sbjct: 1066 KYAVYANP 1073
Score = 41.9 bits (94), Expect = 0.021
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHAS----------HHRNVLTDCYQRLEFLGDAILDYLITR 241
LE + YRF++R LL A+TH S H RN LT+C R GD + Y+ TR
Sbjct: 746 LEESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTR 805
Query: 242 H-----LYE-----DKRCHSPGALT-DLRSALVNNTIFATLAARHGFHKYFRHMSPGLNE 388
L K + +T + R + + + L++ H F + GL
Sbjct: 806 KRGINTLVSIMSRFGKEHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLAT 865
Query: 389 VLKKYVKIQEEN--GHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMS 562
V+ Q + E ++++ + ++E+ A+ + FE++ GA+ LD G+
Sbjct: 866 YRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 925
Query: 563 LGRRV 577
+ V
Sbjct: 926 VADEV 930
>UniRef50_A6DSV3 Cluster: Ribonuclease III; n=1; Lentisphaera
araneosa HTCC2155|Rep: Ribonuclease III - Lentisphaera
araneosa HTCC2155
Length = 232
Score = 53.2 bits (122), Expect = 9e-06
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASHH---RNVLTDCYQRLEFLGDAILDYLITR 241
M ++ LE L+ +F +LL +A+TH S+ + L D QRLEFLGDA+++ +++R
Sbjct: 1 MSISFKVLEDNLKCKFNQPTLLREALTHRSYKFESKEPLND-NQRLEFLGDAVIELIVSR 59
Query: 242 HLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
+L++ G LT R+ALV + A KY
Sbjct: 60 YLFDRYPDAPEGDLTKYRAALVKESALFECAKSIKLGKY 98
>UniRef50_Q9PB98 Cluster: Ribonuclease 3; n=14;
Gammaproteobacteria|Rep: Ribonuclease 3 - Xylella
fastidiosa
Length = 227
Score = 52.8 bits (121), Expect = 1e-05
Identities = 36/91 (39%), Positives = 49/91 (53%)
Frame = +2
Query: 62 LEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITR 241
+ S Y+Q + Y F D SLLLQA+ H S T +RLEFLGD++++ LI
Sbjct: 2 ISSKASDYQQR---IGYVFTDPSLLLQALRHCSAG----TPHNERLEFLGDSVVNLLIAE 54
Query: 242 HLYEDKRCHSPGALTDLRSALVNNTIFATLA 334
L++ GALT RS LV T A++A
Sbjct: 55 ALFQRWPRADEGALTRARSELVRETSLASIA 85
>UniRef50_Q2S2W4 Cluster: Ribonuclease III; n=1; Salinibacter ruber
DSM 13855|Rep: Ribonuclease III - Salinibacter ruber
(strain DSM 13855)
Length = 248
Score = 42.3 bits (95), Expect(2) = 1e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY---QRLEFLGDAILDYLITRHLYEDKR 262
+E+++ D S +A+TH S R + +RLEFLGDA+LD + LY+
Sbjct: 21 IEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDRFP 80
Query: 263 CHSPGALTDLRSALVNNTIFATLA 334
GALT LR+ LV+ AT A
Sbjct: 81 EKDEGALTRLRARLVSERPLATYA 104
Score = 29.9 bits (64), Expect(2) = 1e-05
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 446 HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGR 571
H L+ E+ E + + P L D FE+ GA++LD G R
Sbjct: 112 HLLMSENAAE-GDGRDNPSILADAFEAFVGAVYLDLGHEAAR 152
>UniRef50_Q6SFI8 Cluster: Ribonuclease III; n=2; Bacteria|Rep:
Ribonuclease III - uncultured bacterium 580
Length = 231
Score = 52.4 bits (120), Expect = 2e-05
Identities = 30/72 (41%), Positives = 47/72 (65%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
LE+ ++Y+F+D LL AMTH SH + + + +RLEFLGD+IL++++ L++
Sbjct: 9 LEKSIKYKFKDDKLLALAMTHRSH--SGMNN--ERLEFLGDSILNFVVADLLFKKFNDLD 64
Query: 272 PGALTDLRSALV 307
G L+ LRS LV
Sbjct: 65 EGDLSRLRSQLV 76
>UniRef50_A5UJK3 Cluster: Ribonuclease III (DsRNA-specific), Rnc;
n=1; Methanobrevibacter smithii ATCC 35061|Rep:
Ribonuclease III (DsRNA-specific), Rnc -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 223
Score = 52.4 bits (120), Expect = 2e-05
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Frame = +2
Query: 119 RDRSLLLQAMTHASHH-RNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLR 295
+DR L A TH S+ ++ L Y+RLEFLGD++L+ +++ +LY+ + G LT LR
Sbjct: 12 KDRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPDYEEGKLTKLR 71
Query: 296 SALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEME 475
+ V T Y+ H GL+ K++KI + D+ +
Sbjct: 72 ANYVCQTALI----------YYSH-ELGLD----KHIKI---------------YGDDSK 101
Query: 476 QAEDVEVPKALGDLFESVAGAIFLDSGMSLGR 571
E+ EV D+FES GAIFLD G+ +
Sbjct: 102 ITEN-EVLSITADVFESFLGAIFLDQGIEFAK 132
>UniRef50_Q9Z5U2 Cluster: Ribonuclease 3; n=7; Sphingomonadales|Rep:
Ribonuclease 3 - Zymomonas mobilis
Length = 223
Score = 52.4 bits (120), Expect = 2e-05
Identities = 33/91 (36%), Positives = 51/91 (56%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
+E+ L +R +D +L L+AMTH SH + YQRLEFLGD +L +I LY+
Sbjct: 10 IEKNLGHRPKDPALFLRAMTHPSHGNSD----YQRLEFLGDRVLGLVIANWLYDLFPREP 65
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFR 364
G L+ ++LV+ A++A G ++ R
Sbjct: 66 EGKLSRRLNSLVSGASCASIARIVGLPQWLR 96
>UniRef50_P51837 Cluster: Ribonuclease 3; n=5;
Gammaproteobacteria|Rep: Ribonuclease 3 - Coxiella
burnetii
Length = 233
Score = 52.4 bits (120), Expect = 2e-05
Identities = 30/91 (32%), Positives = 53/91 (58%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
+ER L ++F + LL A+TH S D +RLEFLGD++L ++I LY+ +
Sbjct: 8 MER-LGHQFNNLELLKIALTHCSSG----ADNNERLEFLGDSVLGFIIASELYQRRPQAR 62
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFR 364
G L+ +R+++VN A ++ + G ++Y +
Sbjct: 63 EGDLSRMRASMVNGDELAQMSTKLGINEYLQ 93
>UniRef50_Q5P9U8 Cluster: Ribonuclease 3; n=2; Anaplasma|Rep:
Ribonuclease 3 - Anaplasma marginale (strain St. Maries)
Length = 232
Score = 52.4 bits (120), Expect = 2e-05
Identities = 31/79 (39%), Positives = 42/79 (53%)
Frame = +2
Query: 110 YRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTD 289
Y+FRD LLL+A+TH + Y+RLEFLGDA+L ++ LY G LT
Sbjct: 19 YQFRDLDLLLEALTHPRLSYKSAAN-YERLEFLGDAVLSMTVSEMLYRLFPDDDEGCLTR 77
Query: 290 LRSALVNNTIFATLAARHG 346
R+ALV + +A G
Sbjct: 78 KRTALVRGSEVVEIARSIG 96
>UniRef50_A4RHU9 Cluster: Dicer-like protein 2 [Includes:
Endoribonuclease DCL2 (EC 3.1.26.-); ATP-dependent
helicase DCL2 (EC 3.6.1.-)]; n=3; Magnaporthe grisea|Rep:
Dicer-like protein 2 [Includes: Endoribonuclease DCL2 (EC
3.1.26.-); ATP-dependent helicase DCL2 (EC 3.6.1.-)] -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1485
Score = 52.4 bits (120), Expect = 2e-05
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHH-RNVLTDCYQRLEFLGDAILDYLITRHLY--EDKR 262
LE +L Y F +SLL++A+THAS++ +RLEFLGD++LD+++ L+ +D
Sbjct: 1171 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1230
Query: 263 CHSPGALTDLRSALVNNTIFATLA 334
+ LR+A+VN LA
Sbjct: 1231 PIEHYNMHLLRTAVVNGEFLGFLA 1254
Score = 36.3 bits (80), Expect = 1.1
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
Frame = +2
Query: 116 FRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSP-GALTDL 292
F+D L++ +T +S R LT+ Y+R+EFLGDA+L L H P G L+ L
Sbjct: 1002 FKDIDLVMMVITSSSAGR--LTN-YERVEFLGDAVLK-LGAAVTCATNNLHFPEGYLSLL 1057
Query: 293 RSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEM 472
+ LV+N+ A G ++ + ++Y S+ + ++ E
Sbjct: 1058 KDRLVSNSRLCKAATALGLDQFI---------ITRQY---------SLKQWRNMLTAPEP 1099
Query: 473 EQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRR 574
K L D+ E++ GA +++ GMS R
Sbjct: 1100 PTNTRKMSSKTLADVTEALIGAAYIEGGMSKALR 1133
>UniRef50_Q98514 Cluster: Putative protein A464R; n=6;
Chlorovirus|Rep: Putative protein A464R - Paramecium
bursaria Chlorella virus 1 (PBCV-1)
Length = 275
Score = 52.0 bits (119), Expect = 2e-05
Identities = 23/65 (35%), Positives = 39/65 (60%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
Y+R+EF+GD++L ++I R+LY++ G L+ LR+ V+ +++A R G H Y
Sbjct: 84 YERMEFVGDSVLGFIIARYLYDNFPGKDEGFLSRLRTKFVSGKFLSSIALRMGLHNYVIM 143
Query: 368 MSPGL 382
GL
Sbjct: 144 HQKGL 148
>UniRef50_Q6YPW7 Cluster: Ribonuclease 3; n=3; Candidatus
Phytoplasma|Rep: Ribonuclease 3 - Onion yellows
phytoplasma
Length = 238
Score = 39.1 bits (87), Expect(2) = 2e-05
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASH--HRNVLTDCYQRLEFLGDAILDYLITRHLYEDK 259
+ L + L ++ +L QA+TH+S+ +N + +RLEFLGDAI+ L+ +LY
Sbjct: 5 QTLFQTLNITPQNLTLYKQALTHSSYSNEQNPPQEDNERLEFLGDAIVGLLMADYLYSQS 64
Query: 260 RCHSPGALTDLRSALV 307
+ G +T R+ V
Sbjct: 65 K-EDEGIMTKKRAQAV 79
Score = 32.3 bits (70), Expect(2) = 2e-05
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 428 HSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRV 577
H+I ++YL+ + E+ +D + D FE++ GAI+LD G ++V
Sbjct: 89 HNIELQNYLLL-GKGEKNKDFNAKSIIADTFEALFGAIYLDLGYLTAKKV 137
>UniRef50_Q0LPI7 Cluster: Ribonuclease III; n=1; Herpetosiphon
aurantiacus ATCC 23779|Rep: Ribonuclease III -
Herpetosiphon aurantiacus ATCC 23779
Length = 234
Score = 51.2 bits (117), Expect = 3e-05
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRHLYEDK 259
+L+ L Y F D + L AM H S+ H ++ +RLEFLGDA+L+++ L+ +
Sbjct: 5 KLQAELGYTFNDLNFLRAAMLHRSYVHEHPEAGSESNERLEFLGDALLNFICGSFLFHEF 64
Query: 260 RCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
G LT R+ LV A LA R Y
Sbjct: 65 PELGEGDLTKTRAMLVQTRTLAGLARRFNLGSY 97
>UniRef50_A3VSG4 Cluster: Ribonuclease III; n=1; Parvularcula
bermudensis HTCC2503|Rep: Ribonuclease III -
Parvularcula bermudensis HTCC2503
Length = 238
Score = 51.2 bits (117), Expect = 3e-05
Identities = 35/84 (41%), Positives = 47/84 (55%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
+E + +RF DRSLL +A+THAS ++ L D +RLEFLGD +L L L+ +
Sbjct: 17 VEAAVGHRFDDRSLLARALTHASVSQDGLKD-LERLEFLGDRVLGLLAADLLWRRFPDMA 75
Query: 272 PGALTDLRSALVNNTIFATLAARH 343
G L +ALV A AARH
Sbjct: 76 EGELAPRLNALVRRETCAD-AARH 98
>UniRef50_A1WMW1 Cluster: Ribonuclease III; n=1; Verminephrobacter
eiseniae EF01-2|Rep: Ribonuclease III -
Verminephrobacter eiseniae (strain EF01-2)
Length = 247
Score = 51.2 bits (117), Expect = 3e-05
Identities = 46/155 (29%), Positives = 73/155 (47%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
L+ LQ+ F D LL +A TH R+ + +RLEFLGD++L+ ++ LY+
Sbjct: 8 LQERLQHVFSDPGLLERATTH----RSFSAEHNERLEFLGDSVLNLAVSSLLYQRLSALP 63
Query: 272 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHY 451
G L+ +R+ LV LA R + R L E L Q + ++E
Sbjct: 64 EGELSRVRANLVRQESLYQLALRLPLAQALR-----LGESLSG--NRQRRSRRRCADE-- 114
Query: 452 LIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
+ DE ++ P L D E++ GA++LD+G
Sbjct: 115 -LQPDEAGSG-GLQHPSILADALEALIGAVYLDAG 147
>UniRef50_A0WD16 Cluster: Ribonuclease III; n=1; Geobacter lovleyi
SZ|Rep: Ribonuclease III - Geobacter lovleyi SZ
Length = 228
Score = 51.2 bits (117), Expect = 3e-05
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +2
Query: 101 VLQYRFRDRSLLLQAMTHASHHRNVLTDC---YQRLEFLGDAILDYLITRHLYEDKRCHS 271
+L + F ++ LL QA+TH S+ + YQRLEFLGDA+L +L+ L +
Sbjct: 8 ILGHSFINQRLLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALP 67
Query: 272 PGALTDLRSALVNNTIFATLAARHG 346
G L+ LRS+LV+ A LA G
Sbjct: 68 EGDLSRLRSSLVDQPRLARLAVDAG 92
>UniRef50_Q5C1G8 Cluster: SJCHGC08817 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08817 protein - Schistosoma
japonicum (Blood fluke)
Length = 167
Score = 51.2 bits (117), Expect = 3e-05
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = +2
Query: 479 AEDVEVPKALGDLFESVAGAIFLDSGMSL 565
++DVE+PKALGD+FES+AGAIFLDS SL
Sbjct: 35 SDDVEIPKALGDIFESLAGAIFLDSNFSL 63
>UniRef50_Q97QG6 Cluster: Ribonuclease 3; n=46; Lactobacillales|Rep:
Ribonuclease 3 - Streptococcus pneumoniae
Length = 232
Score = 51.2 bits (117), Expect = 3e-05
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 116 FRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALT 286
F D+ LL A TH S+ HR + +RLEFLGDA+L LI+ +LY+ G L+
Sbjct: 16 FADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLS 75
Query: 287 DLRSALVNNTIFATLAARHGFHKYFR 364
LR+ +V A A F ++ +
Sbjct: 76 KLRAMIVREESLAGFARDCQFDQFIK 101
>UniRef50_A3LS79 Cluster: Predicted protein; n=1; Pichia
stipitis|Rep: Predicted protein - Pichia stipitis
(Yeast)
Length = 566
Score = 47.6 bits (108), Expect(2) = 4e-05
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHM 370
+RLEFLGD++L+ L+T +Y+ S G LT +RS L++N + +GF K +
Sbjct: 241 ERLEFLGDSVLNNLVTLIIYDKFPSASEGKLTKMRSQLIDNHTLTQFSFEYGFDKRLKTK 300
Query: 371 SPGLNEVLK 397
+ E+LK
Sbjct: 301 TD--EEILK 307
Score = 23.0 bits (47), Expect(2) = 4e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 500 KALGDLFESVAGAIFLDSGMSLGRRVEVVRAA*LGRELEAF 622
K D+FE+ GA+ ++ G+ L R ++ +LEAF
Sbjct: 312 KVYADIFEAYIGALSVERGLDL-REIKDWLEKLYAPKLEAF 351
>UniRef50_A0YTE9 Cluster: Ribonuclease III; n=1; Lyngbya sp. PCC
8106|Rep: Ribonuclease III - Lyngbya sp. PCC 8106
Length = 395
Score = 50.8 bits (116), Expect = 5e-05
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Frame = +2
Query: 86 EQLERVLQ-YRFRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
E+L+ +L+ F+D LL +A+TH ++ H ++LEFLGD++L++L +LYE
Sbjct: 164 ERLKELLETIPFQDARLLQRALTHRTYVFEHPTKTEGDNEQLEFLGDSVLNFLAGDYLYE 223
Query: 254 D-KRCHSPGALTDLRSALVNNTIFATLAAR 340
G LT RS+ V+N+ FA A +
Sbjct: 224 QYSHRRDEGELTRRRSSFVDNSQFAQFAVK 253
>UniRef50_Q556G5 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 1203
Score = 50.8 bits (116), Expect = 5e-05
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +2
Query: 83 YEQLERVLQYR-FRDRSLLLQAMTH--ASHHRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
Y+Q+ + L F D++ L + H ++ + N T+ +RLEFLGDA+LD+++ +L+
Sbjct: 1063 YDQINQYLNSTDFNDQTNELVSNDHFYSNQNNNNNTNFSERLEFLGDAVLDFIVADYLFS 1122
Query: 254 DKRCHSPGALTDLRSALVNN 313
+ G LT+ +S LVNN
Sbjct: 1123 KYKEQQEGYLTESKSKLVNN 1142
Score = 36.7 bits (81), Expect = 0.81
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
YQRLEFLGD++L + +L++ G L+ R N L+ R GF R
Sbjct: 925 YQRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILR 983
>UniRef50_O83787 Cluster: Ribonuclease 3; n=1; Treponema
pallidum|Rep: Ribonuclease 3 - Treponema pallidum
Length = 254
Score = 39.5 bits (88), Expect(2) = 5e-05
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDC----YQRLEFLGDAILDYLITRHLYED 256
+L+ L +FRD + L QA++H S + C +R+EFLGDA+L + LY
Sbjct: 26 RLQETLGVKFRDPTALDQALSHRSLFSSKEDHCGVRHNERMEFLGDAVLGAVAAACLYRA 85
Query: 257 KRCHSPGALTDLRSALVNNTIFATLA 334
G L ++ LV+ + +A
Sbjct: 86 LPDSHEGDLAKTKAVLVSTDTLSDIA 111
Score = 30.7 bits (66), Expect(2) = 5e-05
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 431 SISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRR 574
S+ +HYL+ E + L D E+V GA+FLDSG R
Sbjct: 113 SLRIDHYLLLGKGEELSGGRHKKAILADATEAVIGALFLDSGFKAAER 160
>UniRef50_Q67B98 Cluster: Ribonuclease III-like protein; n=2;
Murinae|Rep: Ribonuclease III-like protein - Rattus
norvegicus (Rat)
Length = 288
Score = 50.4 bits (115), Expect = 6e-05
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +2
Query: 59 ELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY-QRLEFLGDAILDYLI 235
E ++ + E + F LL +A T + N LT + QR+EFLGD+I+ +
Sbjct: 13 ETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVA 72
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
T +L+ H G LT LRS+LVNN A +A G +Y
Sbjct: 73 TEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 113
>UniRef50_A1U2V5 Cluster: Ribonuclease III; n=5; Bacteria|Rep:
Ribonuclease III - Marinobacter aquaeolei (strain ATCC
700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 229
Score = 50.4 bits (115), Expect = 6e-05
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
+QL+R + Y+F++ LL A+TH R+ +RLEFLGD+I++ +I +LY
Sbjct: 8 DQLQRRIGYQFKEPERLLLALTH----RSFGNQNNERLEFLGDSIVNMVIAEYLYLHFEK 63
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
G L+ LR+ +V A + +Y R
Sbjct: 64 AREGQLSRLRARMVKGVTLAEIGREFQLGQYLR 96
>UniRef50_Q53844 Cluster: Ribonuclease 3; n=2; Spiroplasma
citri|Rep: Ribonuclease 3 - Spiroplasma citri
Length = 248
Score = 50.4 bits (115), Expect = 6e-05
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +2
Query: 119 RDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLR 295
++R L+A+TH S+ + + L+ YQR+EFLGDAIL I+ +L+ + G +T+LR
Sbjct: 27 KERQYYLEALTHNSYANEHNLSYTYQRMEFLGDAILAKEISLYLFLSFPDKNEGEITNLR 86
Query: 296 SALVNNTIFATLAAR 340
S +V A L R
Sbjct: 87 SKIVREGTLAELVRR 101
>UniRef50_Q9NRR4 Cluster: Ribonuclease 3; n=59; Eumetazoa|Rep:
Ribonuclease 3 - Homo sapiens (Human)
Length = 1374
Score = 50.4 bits (115), Expect = 6e-05
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +2
Query: 59 ELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY-QRLEFLGDAILDYLI 235
E ++ + E + F LL +A T + N LT + QR+EFLGD+I+ +
Sbjct: 1099 ETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVA 1158
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
T +L+ H G LT LRS+LVNN A +A G +Y
Sbjct: 1159 TEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199
Score = 41.5 bits (93), Expect = 0.028
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAAR 340
+RLEFLGDA++++L + HLY G L R+A+V N A LA +
Sbjct: 966 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKK 1015
Score = 36.7 bits (81), Expect = 0.81
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRN 172
L++++ Y F+DR LL AMTH SHH N
Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLN 905
>UniRef50_A6GP51 Cluster: Ribonuclease III; n=1; Limnobacter sp.
MED105|Rep: Ribonuclease III - Limnobacter sp. MED105
Length = 226
Score = 42.3 bits (95), Expect(2) = 7e-05
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 104 LQYRFRDRSLLLQAMTHASH--HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPG 277
+ Y F+D++LL A+TH S+ H N +RLEFLGD++L+ + L+E G
Sbjct: 1 MAYSFKDQALLRLALTHRSYSSHHN------ERLEFLGDSVLNCAASILLFETHPDMDEG 54
Query: 278 ALTDLRSALVNNTIFA 325
++ +RS LV A
Sbjct: 55 KMSRVRSHLVKQDCLA 70
Score = 27.5 bits (58), Expect(2) = 7e-05
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 425 GHSISEEHYL-IHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRR--VEVVRAA 595
G ++ + YL + E+ A+ ++ + D E++ GAI LDSG R V +++
Sbjct: 73 GRNLLLDQYLFLGAGELRSAKTIK-DSIVADALEALFGAILLDSGFEAARDCVVRLLKPV 131
Query: 596 *LGRELEAFXRGP 634
L +E+ + P
Sbjct: 132 MLETPIESMGKDP 144
>UniRef50_A4E6T0 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 241
Score = 50.0 bits (114), Expect = 8e-05
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 95 ERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
+ +L + F ++ LL A+TH S ++ Y+RLEFLGD+IL ++ R L+E
Sbjct: 11 QEILGHEFNNKVLLRAALTHPSAVEGQPVSASYERLEFLGDSILGAVVARSLFESYPEFD 70
Query: 272 PGALTDLRSALVNNTIFATLAARHG 346
G LT L+ +LV+ + ++ G
Sbjct: 71 EGKLTRLKVSLVSGATLSEVSHELG 95
>UniRef50_Q7VRR0 Cluster: Ribonuclease 3; n=4;
Gammaproteobacteria|Rep: Ribonuclease 3 - Blochmannia
floridanus
Length = 232
Score = 50.0 bits (114), Expect = 8e-05
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
L++ L Y F LLL+A+TH R+ +RLEFLGD+IL+Y IT LY
Sbjct: 12 LQKKLGYFFHTVDLLLRALTH----RSFSNKHNERLEFLGDSILNYSITNILYHRYNHMD 67
Query: 272 PGALTDLRSALVNNTIFATLA 334
G ++ +RS+LV + LA
Sbjct: 68 EGDMSRIRSSLVCSRTLVELA 88
>UniRef50_Q8Z023 Cluster: Ribonuclease 3; n=6; Cyanobacteria|Rep:
Ribonuclease 3 - Anabaena sp. (strain PCC 7120)
Length = 228
Score = 50.0 bits (114), Expect = 8e-05
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Frame = +2
Query: 116 FRDRSLLLQAMTHASH-HRNVLTDCY-QRLEFLGDAILDYLITRHLYEDKRCHSPGALTD 289
FRD LL +A+TH S+ + N + +RLEFLGDAIL++L +LY LT
Sbjct: 7 FRDDKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66
Query: 290 LRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDE 469
RSALV+ A A G R + + + + ++ +YL +
Sbjct: 67 RRSALVDEKQLAKFAIEVGLDFKMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126
Query: 470 MEQAEDVEVPKALGDLFESV 529
+E + P LFESV
Sbjct: 127 IEAVRAIIEP-----LFESV 141
>UniRef50_Q5GTI3 Cluster: Ribonuclease 3; n=26; Rickettsiales|Rep:
Ribonuclease 3 - Wolbachia sp. subsp. Brugia malayi
(strain TRS)
Length = 243
Score = 49.6 bits (113), Expect = 1e-04
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHAS-HHRNVLTDC--YQRLEFLGDAILDYLITRHLYED 256
+ + +++ YRF++ ++L +A+TH S + RN Y+RLEFLGD+IL+ +++ L+
Sbjct: 16 DTISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRL 75
Query: 257 KRCHSPGALTDLRSALVNNTIFATLA 334
GAL ++ LV A +A
Sbjct: 76 FPKEKEGALARRKTDLVCGNTIANVA 101
>UniRef50_Q82JT9 Cluster: Ribonuclease 3; n=37; Actinobacteria
(class)|Rep: Ribonuclease 3 - Streptomyces avermitilis
Length = 276
Score = 49.6 bits (113), Expect = 1e-04
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 65 EKMVSGYEQLERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITR 241
+ S + LE L Y+ + +LL++A+TH S+ + N +RLEFLGD++L ++T
Sbjct: 15 DNTASSHTLLEGRLGYKL-ESALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTD 73
Query: 242 HLYEDKRCHSPGALTDLRSALVNNTIFA 325
LY G L LR+A+VN+ A
Sbjct: 74 TLYRTHPDLPEGQLAKLRAAVVNSRALA 101
>UniRef50_Q4FUV6 Cluster: Ribonuclease 3; n=6;
Gammaproteobacteria|Rep: Ribonuclease 3 - Psychrobacter
arcticum
Length = 265
Score = 49.6 bits (113), Expect = 1e-04
Identities = 31/81 (38%), Positives = 40/81 (49%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
L R L Y F D SL A+TH S Y+RLEFLGDA+L ++ LY +
Sbjct: 37 LTRKLGYVFNDLSLAKLALTHRSFDSK---KNYERLEFLGDALLGMIVGEALYHRYPTQN 93
Query: 272 PGALTDLRSALVNNTIFATLA 334
G LT +R+ LV +A
Sbjct: 94 EGRLTRMRATLVRQESLVIIA 114
>UniRef50_A0DYG6 Cluster: Chromosome undetermined scaffold_7, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_7,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 822
Score = 49.2 bits (112), Expect = 1e-04
Identities = 40/137 (29%), Positives = 67/137 (48%)
Frame = +2
Query: 140 QAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTI 319
+A++ AS++R++ Y+ LE LGD+IL YL T + + + L+D RS +VNN
Sbjct: 370 RAISRASYNRDIN---YELLETLGDSILKYLATVSVSLGPQNTNENILSDQRSQIVNNNF 426
Query: 320 FATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVP 499
++ + F H L K + + +N HS H I + ++Q +
Sbjct: 427 IGKHLFKYQYFGLF-HYVRSLGHQTKWFSPVL-QNIHS---NH--IQPEPIKQVSATMLV 479
Query: 500 KALGDLFESVAGAIFLD 550
L D+FES+ +FLD
Sbjct: 480 TFLADIFESLIATVFLD 496
Score = 35.5 bits (78), Expect = 1.9
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +2
Query: 188 YQRLEFLGDAILD-YLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
+Q LE +GDA+L+ Y++ + +P L ++ L++N+ + +A + F+
Sbjct: 623 HQMLELIGDAVLECYIMCNCFNQIIFKFTPTNLYKIKMVLLSNSFLSKIAICYNIMHNFQ 682
Query: 365 HMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIF 544
+ + ++++ + +E + + V VPK L D FE++ GAIF
Sbjct: 683 ------DTAILQFIETVK------LDEKFTYYNGNF-----VRVPKVLSDTFEALVGAIF 725
Query: 545 LDSG 556
+D G
Sbjct: 726 MDGG 729
>UniRef50_A5E7T6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 729
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
+RLEF GD+IL+ LIT +Y ++ G L+ +R+A++NN + +A +GF K R
Sbjct: 389 ERLEFYGDSILNNLITIIIYNKFPNNTEGELSKIRAAMINNRVLKEIAVDYGFDKKLR 446
>UniRef50_Q2LVR4 Cluster: Ribonuclease III; n=1; Syntrophus
aciditrophicus SB|Rep: Ribonuclease III - Syntrophus
aciditrophicus (strain SB)
Length = 240
Score = 48.8 bits (111), Expect = 2e-04
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Frame = +2
Query: 65 EKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY---QRLEFLGDAILDYLI 235
E+ + ++LE L FRD +LL A+ H S+ + + +RLEFLGDA+L+ I
Sbjct: 3 EERQTALKKLESHLSCAFRDITLLDNALVHRSYVNENPSLSFADNERLEFLGDAVLELCI 62
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAAR 340
+ L + +S G L+ LR+++VN A LA +
Sbjct: 63 SDLLMKAFPDYSEGQLSKLRASVVNEQPLAELAKK 97
>UniRef50_Q1YS28 Cluster: Ribonuclease III; n=1; gamma
proteobacterium HTCC2207|Rep: Ribonuclease III - gamma
proteobacterium HTCC2207
Length = 225
Score = 48.8 bits (111), Expect = 2e-04
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLY 250
M S +QL+ LQY+F D LL A++H S N +RLEFLGDA+L I+ L+
Sbjct: 1 MASNAKQLQDRLQYQFSDPQLLTLALSHRSCGSNN----NERLEFLGDAVLGMAISSFLF 56
Query: 251 EDKRCHSPGALTDLRSALVNNTIFATLAAR 340
+ G L+ +RS +V A +A +
Sbjct: 57 QRFPEAREGDLSRIRSQVVRAESLAEIARK 86
>UniRef50_A4GK15 Cluster: Ribonuclease III; n=1; uncultured marine
bacterium HF130_81H07|Rep: Ribonuclease III - uncultured
marine bacterium HF130_81H07
Length = 220
Score = 48.8 bits (111), Expect = 2e-04
Identities = 28/90 (31%), Positives = 51/90 (56%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLY 250
M +++LE+ L Y F+ + L++A+TH S + + + EFLGD++L+ +I++ L
Sbjct: 1 MNKDFKKLEKNLGYSFQKKETLVKALTHVSKSK----ENNEVFEFLGDSVLNLIISQILV 56
Query: 251 EDKRCHSPGALTDLRSALVNNTIFATLAAR 340
E G L+ +RS LV+ T +A +
Sbjct: 57 EKFSMDDEGTLSLMRSKLVSRTTLNKIAKK 86
>UniRef50_A0NMB9 Cluster: Ribonuclease III; n=1; Stappia aggregata
IAM 12614|Rep: Ribonuclease III - Stappia aggregata IAM
12614
Length = 236
Score = 48.8 bits (111), Expect = 2e-04
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHAS--HHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
L+ LQY FRD LL A+THAS + YQRLEFLGD +L +I L++
Sbjct: 14 LKNALQYEFRDLELLRVALTHASALPPSETVAGSYQRLEFLGDRVLGLVIASMLHKHFPR 73
Query: 266 HSPGALTDLRSALVNNTIFATLAARHG 346
G L + +V A +A G
Sbjct: 74 ADEGELARRFNHMVKRETCAEIAQELG 100
>UniRef50_Q6BX76 Cluster: Similar to CA1420|CaRNT1 Candida albicans
CaRNT1 Ribonuclease III; n=1; Debaryomyces hansenii|Rep:
Similar to CA1420|CaRNT1 Candida albicans CaRNT1
Ribonuclease III - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 540
Score = 48.8 bits (111), Expect = 2e-04
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +2
Query: 161 HHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAAR 340
H ++ +RLEFLGD++L+ L+T ++ S G L+ +RS LVNN A +
Sbjct: 210 HKSELMASHNERLEFLGDSVLNNLVTVIIFNKFPEASEGELSKIRSLLVNNVTLAEFSIL 269
Query: 341 HGFHKYFR 364
+GF K R
Sbjct: 270 YGFDKKLR 277
>UniRef50_Q3ZXY9 Cluster: Ribonuclease 3; n=3; Dehalococcoides|Rep:
Ribonuclease 3 - Dehalococcoides sp. (strain CBDB1)
Length = 237
Score = 48.8 bits (111), Expect = 2e-04
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHAS---HHRNVLTDCYQRLEFLGDAILDYLITRHLYEDK 259
+LE L +F SLL QA+ H S + N + +R+EFLGDA+L + LY D
Sbjct: 6 ELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYHDF 65
Query: 260 RCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
G LT RS LV +A KY
Sbjct: 66 PDIQEGDLTRFRSLLVRRESLVRVALGINLGKY 98
>UniRef50_A1I8J4 Cluster: Ribonuclease III; n=1; Candidatus
Desulfococcus oleovorans Hxd3|Rep: Ribonuclease III -
Candidatus Desulfococcus oleovorans Hxd3
Length = 231
Score = 43.6 bits (98), Expect(2) = 2e-04
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 262
LE+ L YRF D LL +A+ H+S+ + + +RLEFLGDA L I L
Sbjct: 6 LEQHLVYRFTDTGLLAKALRHSSYVNEQADPAMEDNERLEFLGDAALSLCIGHLLMARFP 65
Query: 263 CHSPGALTDLRSALVN 310
S G L+ R+ LVN
Sbjct: 66 ELSEGDLSQTRAGLVN 81
Score = 24.6 bits (51), Expect(2) = 2e-04
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 425 GHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
G S++ Y++ EQ L + E++ GAI+LD G
Sbjct: 89 GRSMNLGEYVLLGKGEEQTNGRNKDSILANAVEALLGAIYLDGG 132
>UniRef50_Q3VWC5 Cluster: Ribonuclease III; n=1; Prosthecochloris
aestuarii DSM 271|Rep: Ribonuclease III -
Prosthecochloris aestuarii DSM 271
Length = 277
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +2
Query: 182 DCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLA 334
D QRLEFLGDA+LD +I+ HLY+ GAL+ RS +VN A A
Sbjct: 81 DSNQRLEFLGDAVLDLIISEHLYKLFPESDEGALSSTRSKIVNRKSLADFA 131
>UniRef50_Q190G5 Cluster: Ribonuclease III; n=3; Peptococcaceae|Rep:
Ribonuclease III - Desulfitobacterium hafniense (strain
DCB-2)
Length = 262
Score = 48.4 bits (110), Expect = 2e-04
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +2
Query: 131 LLLQAMTHASH-HRNVLT--DCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
L A+TH S+ N + + QRLEFLGDAILD+++ +LY G LT +R+A
Sbjct: 51 LFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRAA 110
Query: 302 LVNNTIFATLAAR 340
+VN + A A +
Sbjct: 111 VVNESTLARTAKK 123
>UniRef50_A3EQH6 Cluster: DsRNA-specific ribonuclease; n=1;
Leptospirillum sp. Group II UBA|Rep: DsRNA-specific
ribonuclease - Leptospirillum sp. Group II UBA
Length = 377
Score = 48.4 bits (110), Expect = 2e-04
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTH--ASHHRNVLTDC--YQRLEFLGDAILDYLITRHLYE 253
E L R+L F+ + +A+TH ASH R T Y+RLEFLGD ++ +++ +L
Sbjct: 19 EHLIRILGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLN 78
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
S G + + S +V+ A++A R Y
Sbjct: 79 TWPSASEGDIGQIFSGIVSTQTLASIARRMDLGSY 113
>UniRef50_Q3SE71 Cluster: Ribonuclease with two RNaseIII domains;
n=2; Paramecium tetraurelia|Rep: Ribonuclease with two
RNaseIII domains - Paramecium tetraurelia
Length = 632
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +2
Query: 68 KMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHL 247
K+ S + +E +L Y+ + +++ + ++ RN Y+ LE LGD++L Y++T +
Sbjct: 327 KIWSHQDSVESILNYQVVEEAIVTSS---SNFKRN-----YENLELLGDSVLKYVVTVDI 378
Query: 248 YEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
+ G +T LRS L+ NT A L + G Y
Sbjct: 379 FRQYELLDEGEMTSLRSRLIMNTFLAQLFEQLGLQHY 415
Score = 37.5 bits (83), Expect = 0.46
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 491 EVPKALGDLFESVAGAIFLDSG 556
E+PK GD+FESVA AI LDSG
Sbjct: 589 EIPKLYGDIFESVAAAILLDSG 610
Score = 33.1 bits (72), Expect = 9.9
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKR---------CHSPGALTDLRSALVNNTIFATLAAR 340
Y RLEFLGDA ++ L+ +++ R +PG L+ + L+ N R
Sbjct: 521 YDRLEFLGDAAIELLVISYIFRAAREKQQRNPNWILNPGLLSTWKQQLLGNKFMGEQTIR 580
Query: 341 HGFHKYFRHMSPGLNEVLKKYVKIQE 418
G + P +NE+ K Y I E
Sbjct: 581 MG-------LKPHINEIPKLYGDIFE 599
>UniRef50_Q6N6C1 Cluster: Ribonuclease 3; n=14; Rhizobiales|Rep:
Ribonuclease 3 - Rhodopseudomonas palustris
Length = 272
Score = 48.4 bits (110), Expect = 2e-04
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVL-TDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
+E+ L + F D SLL A TH S ++ TD YQRLEFLGD +L +++ LY
Sbjct: 47 IEQRLGHSFADPSLLTTAFTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106
Query: 269 SPGALTDLRSALVNNTIFATLA 334
G L+ + LV A +A
Sbjct: 107 DEGELSKRLADLVRKETCADVA 128
>UniRef50_Q3A4Q8 Cluster: Ribonuclease 3; n=1; Pelobacter
carbinolicus DSM 2380|Rep: Ribonuclease 3 - Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 232
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHAS--HHRNVLTDC-YQRLEFLGDAILDYLITRHLYEDKR 262
LE + Y F +++LLL+A+TH S + +N T+ +RLEFLGDA+L +++ +++
Sbjct: 10 LEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDNERLEFLGDAVLGVVVSHYIFRTFP 69
Query: 263 CHSPGALTDLRSALVN 310
G LT +RS +V+
Sbjct: 70 HLPEGELTRIRSEVVS 85
>UniRef50_Q4A589 Cluster: Ribonuclease 3; n=1; Mycoplasma synoviae
53|Rep: Ribonuclease 3 - Mycoplasma synoviae (strain 53)
Length = 231
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +2
Query: 86 EQLERVLQ---YRFRDRSLLLQAMTHASHHR-NVLTDCYQRLEFLGDAILDYLITRHLYE 253
E+L+ LQ +++ L ++A TH ++ + N + Y+RLEFLGD+++ +LI+ +
Sbjct: 10 EELKAFLQKNNIEYKNIDLFIEATTHKTYSKVNKNSKDYERLEFLGDSLVGFLISDYCVR 69
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAAR 340
+ PG L+ LRS LV+ +A +
Sbjct: 70 EFSSLEPGELSRLRSKLVDKLALFKIAQK 98
>UniRef50_Q6F1N5 Cluster: Ribonuclease 3; n=4; Mollicutes|Rep:
Ribonuclease 3 - Mesoplasma florum (Acholeplasma florum)
Length = 231
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 113 RFRDRSLLLQAMTHASHHRNVLT-DCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTD 289
+ D + A+TH S+ T + YQRLEFLGDA+L +++ LY + G LT
Sbjct: 13 KINDSKIFSTALTHNSYANETKTKETYQRLEFLGDAVLQMYVSKFLYLNFTNAPEGKLTK 72
Query: 290 LRSALVNNTIFATLAARHGFHKYFR 364
RS +V + +A K R
Sbjct: 73 TRSDIVRQETLSEIAKMIDLGKIIR 97
>UniRef50_A2ST26 Cluster: Ribonuclease III; n=1; Methanocorpusculum
labreanum Z|Rep: Ribonuclease III - Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
Length = 145
Score = 48.0 bits (109), Expect = 3e-04
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +2
Query: 83 YEQLERVLQYRFRDRSLLLQAMTHASHHRN---VLTDCYQRLEFLGDAILDYLITRHLYE 253
Y L + Y F + LLL A+T ++ R +++ L LGDA+LD ++ R L E
Sbjct: 3 YSDLYAKIGYTFANVDLLLHALTRTAYARENELSMSETMDSLAVLGDAVLDLIVIRRLIE 62
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
+ G +T + LVN T+ LA G +Y R
Sbjct: 63 EGE-FDKGEITRKKIDLVNMTVVRKLAEDIGLPEYMR 98
>UniRef50_Q1IJU6 Cluster: Ribonuclease III; n=1; Acidobacteria
bacterium Ellin345|Rep: Ribonuclease III - Acidobacteria
bacterium (strain Ellin345)
Length = 258
Score = 47.6 bits (108), Expect = 4e-04
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASH--------HRNVLTDCYQRLEFLGDAILDYLITRHL 247
LE+ L ++F ++ LL++A+TH+S+ H N + + ++LEF+GD++L ++ ++ L
Sbjct: 10 LEKALDHKFEEQELLVRALTHSSYAREQRDHIHDNSVPNDNEQLEFIGDSVLAFVTSQEL 69
Query: 248 YEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
+ G L+ LR+ LV+ A K+ R
Sbjct: 70 VKKFPHFQEGELSKLRAYLVSARHLIQTARNLDLGKFLR 108
>UniRef50_A4A3U5 Cluster: Ribonuclease III; n=1; Congregibacter
litoralis KT71|Rep: Ribonuclease III - Congregibacter
litoralis KT71
Length = 224
Score = 47.6 bits (108), Expect = 4e-04
Identities = 30/81 (37%), Positives = 46/81 (56%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 271
LER R + +LL QA++H R+V + +RLEFLGD++L Y+++ LY
Sbjct: 7 LERQFGCRLNNDALLHQALSH----RSVGSRNNERLEFLGDSVLGYVVSEELYRRFPDAD 62
Query: 272 PGALTDLRSALVNNTIFATLA 334
G L+ LR +LV + A +A
Sbjct: 63 EGQLSRLRVSLVKGSALAEVA 83
>UniRef50_Q55FS1 Cluster: Putative RNase III; n=1; Dictyostelium
discoideum AX4|Rep: Putative RNase III - Dictyostelium
discoideum AX4
Length = 1389
Score = 47.6 bits (108), Expect = 4e-04
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAAR 340
YQRLE++GDA+LD+ ++ LY G LTD RS LV N+ ++++ +
Sbjct: 1253 YQRLEYVGDAVLDFFVSDFLYATFPLAQEGQLTDYRSRLVRNSNLSSISRK 1303
Score = 34.7 bits (76), Expect = 3.3
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
QRLEFLGD++L + T +L+ S G L+ RS N ++ R G + R
Sbjct: 1099 QRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILR 1156
>UniRef50_Q6FQ28 Cluster: Candida glabrata strain CBS138 chromosome
I complete sequence; n=1; Candida glabrata|Rep: Candida
glabrata strain CBS138 chromosome I complete sequence -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 734
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = +2
Query: 176 LTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHK 355
+ + Y+RLEFLGD++++ ++T +Y+ + G +T LR LV+N A +G K
Sbjct: 452 IKNSYERLEFLGDSVINSIMTTIIYKSFPNYDAGQMTRLRVLLVSNRRLEKWAYLYGLQK 511
Query: 356 YFRHMSPGLNEVLKKYVKI 412
+ LNE+L K+
Sbjct: 512 HLLIRKSILNEMLNSGSKV 530
>UniRef50_Q1NXA7 Cluster: Ribonuclease III; n=2; delta
proteobacterium MLMS-1|Rep: Ribonuclease III - delta
proteobacterium MLMS-1
Length = 233
Score = 47.2 bits (107), Expect = 6e-04
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +2
Query: 110 YRFRDRSLLLQAMTHASHHRNVL--TDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGAL 283
YRF+ SLL A+ H+S +RLEFLGDA+L + LYE G L
Sbjct: 17 YRFKRTSLLELALVHSSRAAEAGKGVSSNERLEFLGDAVLGLAVAALLYEAHPTMPEGDL 76
Query: 284 TDLRSALVNNTIFATLAARHGFHKYFR 364
+ R+ALVN A +A + ++ R
Sbjct: 77 SRHRAALVNEEHLAGMARQLALGEFIR 103
>UniRef50_Q648X5 Cluster: Ribonuclease III; n=3; environmental
samples|Rep: Ribonuclease III - uncultured archaeon
GZfos36D8
Length = 262
Score = 47.2 bits (107), Expect = 6e-04
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
+LE + ++F++ +LL +A+T S+ + + + YQ LEFLGD +L ++ L++ +
Sbjct: 18 ELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELFKLSKS 77
Query: 266 HS--PGALTDLRSALVNNTIFATLAARHGFHKYFR 364
S G +T L++ L NN A G Y R
Sbjct: 78 ASLDEGKMTFLKAELENNLRLAEYGENIGLRNYIR 112
Score = 35.5 bits (78), Expect = 1.9
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Frame = +2
Query: 200 EFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG 379
+F A+L+ IT Y ++ PG+ + + + + + A F S
Sbjct: 26 QFKNIALLEEAITTGSYSNEH---PGSSNYQTLEFLGDRVLSLILAEELFKL---SKSAS 79
Query: 380 LNEVLKKYVKIQEENGHSISEEHYLI----HEDEMEQAEDVEVPKALGDLFESVAGAIFL 547
L+E ++K + EN ++E I + E+ ED+ PK + D+FE++ GAI+L
Sbjct: 80 LDEGKMTFLKAELENNLRLAEYGENIGLRNYIRANEKREDIR-PKVIADVFEAICGAIYL 138
Query: 548 DSGMSL 565
D+ S+
Sbjct: 139 DTEESI 144
>UniRef50_Q1FET5 Cluster: Ribonuclease III; n=1; Clostridium
phytofermentans ISDg|Rep: Ribonuclease III - Clostridium
phytofermentans ISDg
Length = 235
Score = 46.8 bits (106), Expect = 8e-04
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCY--QRLEFLGDAILDYLITRHLYEDK 259
+ E+ + Y F + LL QA+TH+S + L+ +RLEFLGDA+L+ + L+E
Sbjct: 12 EFEQKIDYAFTEPGLLRQALTHSSFANEKRLSKLANNERLEFLGDAVLELTTSEWLFEKH 71
Query: 260 RCHSPGALTDLRSALVNNTIFATLA 334
G LT LR+++V A A
Sbjct: 72 PKMPEGDLTKLRASMVCEQTLALCA 96
>UniRef50_Q0AYW0 Cluster: Ribonuclease III; n=1; Syntrophomonas
wolfei subsp. wolfei str. Goettingen|Rep: Ribonuclease
III - Syntrophomonas wolfei subsp. wolfei (strain
Goettingen)
Length = 233
Score = 46.8 bits (106), Expect = 8e-04
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +2
Query: 107 QYRFRDRSLLLQAMTHASH--HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGA 280
Q + L+ A+TH S+ +N + + QRLEFLGDA+L+ ++ +LY + G
Sbjct: 16 QLPYSSNELITMALTHPSYAQEKNTVAN-NQRLEFLGDAVLNLVVAEYLYNHYGRKAEGE 74
Query: 281 LTDLRSALVNNTIFATLAARHGFHKY 358
LT +R+ +V A A +Y
Sbjct: 75 LTKIRAKVVCEDALAIFARNINLGQY 100
>UniRef50_A4R7T3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 402
Score = 46.8 bits (106), Expect = 8e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +2
Query: 119 RDRSLLLQAMTHASHHRNVLT--DCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDL 292
+D S+ A TH+S N L+ Y RLE+LGDA L+ T +Y+ S GA + L
Sbjct: 124 KDPSIEKAAFTHSSVIGNKLSGVQSYDRLEWLGDAYLELFATCFIYQTFPALSHGASSQL 183
Query: 293 RSALVNNTIFATLAARHGFHKYFR 364
R L+ N A +G K R
Sbjct: 184 REVLIRNDSLAQWTQAYGLEKRAR 207
>UniRef50_Q6MEK1 Cluster: Ribonuclease 3; n=1; Candidatus
Protochlamydia amoebophila UWE25|Rep: Ribonuclease 3 -
Protochlamydia amoebophila (strain UWE25)
Length = 242
Score = 46.8 bits (106), Expect = 8e-04
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +2
Query: 62 LEKMVSGYEQLERVLQYRFRDRSLLLQAMTHAS--HHRNVLTDCYQRLEFLGDAILDYLI 235
+E ++ +E L Y F+D LL+ A H S + + +RLEFLGD++L LI
Sbjct: 11 IEHVIRQAPAIEAKLGYTFKDPQLLVLAFVHRSFINENREVNQHNERLEFLGDSVLGMLI 70
Query: 236 TRHLYEDKRCHSPGALTDLRSALV 307
+ +LY G L+ LRS LV
Sbjct: 71 SDYLYCKLPKTPEGQLSYLRSRLV 94
>UniRef50_Q31HP3 Cluster: Ribonuclease III; n=2;
Gammaproteobacteria|Rep: Ribonuclease III -
Thiomicrospira crunogena (strain XCL-2)
Length = 233
Score = 46.4 bits (105), Expect = 0.001
Identities = 30/107 (28%), Positives = 55/107 (51%)
Frame = +2
Query: 59 ELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLIT 238
E+EK +L + L Y++++ L +A+TH R++ +RLEFLGD++++++I
Sbjct: 3 EMEKQAK-LNRLSKSLGYQYKNIEFLQRALTH----RSMGAKNNERLEFLGDSLVNFMIA 57
Query: 239 RHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG 379
L+ S G L+ +R+ LV A + + Y + PG
Sbjct: 58 DALFHQFHKISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLM-LGPG 103
>UniRef50_A6RQB2 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 425
Score = 46.4 bits (105), Expect = 0.001
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDC-YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRS 298
D +L L + TH +TD Y+RLE++GDA + + T + + PG + LR
Sbjct: 148 DPTLELASFTHHGRTNGSVTDLSYERLEWVGDAYIYTISTLLISQTFPALLPGKCSQLRE 207
Query: 299 ALVNNTIFATLAARHGFHK 355
LV N A A ++GF K
Sbjct: 208 RLVKNVTLADFARKYGFEK 226
>UniRef50_A5DC21 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 525
Score = 46.4 bits (105), Expect = 0.001
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHK 355
+RLEFLGD+IL+ ++T ++E S G L+ +R+ L+NN + +GF K
Sbjct: 204 ERLEFLGDSILNNVVTLIIFEQFPTASEGELSRIRALLINNAFLTEFSLAYGFDK 258
>UniRef50_O51648 Cluster: Ribonuclease 3; n=3; Borrelia burgdorferi
group|Rep: Ribonuclease 3 - Borrelia burgdorferi (Lyme
disease spirochete)
Length = 246
Score = 46.4 bits (105), Expect = 0.001
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +2
Query: 104 LQYRFRDRSLLLQAMTHASHHRNV--LTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPG 277
L F + LL A+ H+S+ + + +RLEFLGD++L+ +IT HLY+ S G
Sbjct: 26 LSIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYKTYPNKSEG 85
Query: 278 ALTDLRSALVNNTIFATLAARHGFHKY 358
L+ RS +V+ + +A Y
Sbjct: 86 ELSKARSYIVSEDSLSNIAREINLGSY 112
>UniRef50_Q6A7R5 Cluster: Ribonuclease III; n=2;
Actinomycetales|Rep: Ribonuclease III -
Propionibacterium acnes
Length = 366
Score = 46.0 bits (104), Expect = 0.001
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 122 DRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRS 298
D LL A+TH S+ N +RLEFLGDAIL+ +T +LY G L LRS
Sbjct: 151 DPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRS 210
Query: 299 ALVNNTIFATLAARHG 346
A+V+ LA + G
Sbjct: 211 AVVSTVSLGRLARQLG 226
>UniRef50_Q9KPB2 Cluster: Ribonuclease 3; n=22;
Gammaproteobacteria|Rep: Ribonuclease 3 - Vibrio
cholerae
Length = 225
Score = 46.0 bits (104), Expect = 0.001
Identities = 32/103 (31%), Positives = 48/103 (46%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLY 250
M +L L Y F++ LL A+TH S + +RLEFLGD+IL ++I LY
Sbjct: 1 MTPPMNKLTSKLGYTFKETELLNLALTHRSANGKH----NERLEFLGDSILSFVIADELY 56
Query: 251 EDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG 379
+ G ++ +R+ LV A L Y + + PG
Sbjct: 57 RRFPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYLK-LGPG 98
>UniRef50_Q9PQT8 Cluster: Ribonuclease 3; n=1; Ureaplasma
parvum|Rep: Ribonuclease 3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 236
Score = 46.0 bits (104), Expect = 0.001
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Frame = +2
Query: 119 RDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLY-------EDKRCHSP 274
++ S+ L+A+TH S+ + + LT YQRLEFLGDA ++++I+ ++ E R
Sbjct: 18 KNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMRSLDE 77
Query: 275 GALTDLRSALVNNTIFATLA 334
G +T RS +V + I + A
Sbjct: 78 GEMTRARSNMVRSEILSYAA 97
>UniRef50_A5IYM8 Cluster: Ribonuclease III; n=1; Mycoplasma
agalactiae|Rep: Ribonuclease III - Mycoplasma agalactiae
Length = 226
Score = 45.6 bits (103), Expect = 0.002
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +2
Query: 140 QAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
QA TH S N YQ LEFLGDAIL + ++ L+ + + G LT +RS LV
Sbjct: 23 QAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAILFNSFKDKNQGQLTLIRSKLV 78
>UniRef50_Q3SE73 Cluster: Ribonuclease with two RNaseIII domains;
n=2; Paramecium tetraurelia|Rep: Ribonuclease with two
RNaseIII domains - Paramecium tetraurelia
Length = 725
Score = 45.6 bits (103), Expect = 0.002
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Frame = +2
Query: 182 DCYQRLEFLGDAILDYLIT-------RHLYEDKR----CHS----------PGALTDLRS 298
D ++RLEF GDAIL+ L+ LY + R C PG L +
Sbjct: 551 DQFERLEFFGDAILELLVIVNVHKECEKLYYNPRQQQLCREGKITQKLLLCPGMLHTAKI 610
Query: 299 ALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQ 478
+L+++ T+A H FH+Y R++ + +KK + + ++ + + I++
Sbjct: 611 SLLDSGFMGTMAIYHNFHQYARNLPKEIQNSIKKALALLRQDQFT---DFRRINQYSQ-- 665
Query: 479 AEDVEVPKALGDLFESVAGAIFLDSG 556
++PK + DL+ESVA I ++ G
Sbjct: 666 ----QIPKIMSDLWESVAACILVEYG 687
Score = 38.3 bits (85), Expect = 0.26
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNN 313
YQ LE LGD ++ YL + L+ED + + L+ R L+ N
Sbjct: 362 YQNLEMLGDVVIKYLTSAMLFEDSKYKTENTLSSARVRLITN 403
>UniRef50_Q6LMS2 Cluster: Ribonuclease 3; n=19;
Gammaproteobacteria|Rep: Ribonuclease 3 - Photobacterium
profundum (Photobacterium sp. (strain SS9))
Length = 224
Score = 45.6 bits (103), Expect = 0.002
Identities = 32/103 (31%), Positives = 48/103 (46%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLY 250
M S +L+R L Y+F L+ ++TH S + +RLEFLGD+IL ++I LY
Sbjct: 1 MTSPANRLQRRLGYQFNSSELMTLSLTHRSANGKH----NERLEFLGDSILSFVIADDLY 56
Query: 251 EDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG 379
G ++ +R+ LV A L Y + PG
Sbjct: 57 HRFPHVDEGDMSRMRATLVRGKTLAELGREFELGDYLL-LGPG 98
>UniRef50_Q4A7X2 Cluster: Ribonuclease III; n=3; Mycoplasma
hyopneumoniae|Rep: Ribonuclease III - Mycoplasma
hyopneumoniae (strain 7448)
Length = 227
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +2
Query: 125 RSLLLQAMTHASHHR-NVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
+ + +QA+TH S++ N Y+ LEFLGD++++Y +++ +Y D + G T +RS
Sbjct: 21 KQIYIQALTHKSYNFINPDKPHYEMLEFLGDSVINYAVSKVIY-DNFYKNEGNSTQIRSL 79
Query: 302 LVNNTIFATLAARHGFHKY 358
L + + A + G Y
Sbjct: 80 LTSTSSLANATKKVGLMNY 98
>UniRef50_A2SDH3 Cluster: Ribonuclease III; n=1; Methylibium
petroleiphilum PM1|Rep: Ribonuclease III - Methylibium
petroleiphilum (strain PM1)
Length = 248
Score = 45.2 bits (102), Expect = 0.002
Identities = 33/96 (34%), Positives = 47/96 (48%)
Frame = +2
Query: 77 SGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYED 256
+ ++ L+ L +RF LL +A+TH S D +RLEFLGDA+L I+ L+E
Sbjct: 21 AAFDSLQVRLGHRFAQVGLLGRALTHKSFG----ADNNERLEFLGDAVLSAAISGLLFEH 76
Query: 257 KRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
G LT +R+ LV + LA G R
Sbjct: 77 FGQSGEGDLTRVRAHLVREEMLHRLALDLGLPALLR 112
>UniRef50_A0ZZX0 Cluster: Ribonuclease III; n=2; Bifidobacterium
adolescentis|Rep: Ribonuclease III - Bifidobacterium
adolescentis (strain ATCC 15703 / DSM 20083)
Length = 262
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 131 LLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
LL++A+TH S H + Y+RLEFLGDA+L+ + T LY+ + G L +R+ V
Sbjct: 18 LLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHPDMNEGQLAKMRAKAV 77
Query: 308 NNTIFATLA 334
+ + +A
Sbjct: 78 SEESLSKIA 86
>UniRef50_Q5UQT7 Cluster: Probable ribonuclease 3; n=1; Acanthamoeba
polyphaga mimivirus|Rep: Probable ribonuclease 3 -
Mimivirus
Length = 538
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/92 (28%), Positives = 41/92 (44%)
Frame = +2
Query: 113 RFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDL 292
++ D + +AM H S Y+RLE+LGDAI +IT + Y + G LT L
Sbjct: 39 KYVDMHIFEEAMLHVSTIYEESDKTYERLEYLGDAIFHMIITEYFYHRYNEENEGFLTRL 98
Query: 293 RSALVNNTIFATLAARHGFHKYFRHMSPGLNE 388
R + L+ G + + + LN+
Sbjct: 99 RIRIERGDSMVELSKNLGLNNFVQIYGISLND 130
Score = 37.1 bits (82), Expect(2) = 0.12
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
+RL+FLGDA++ ++I +L+ G LT LR L N+ LA + Y
Sbjct: 351 ERLQFLGDAVIHFIIGEYLFNKYADSGEGYLTRLRCKLENSESLFFLAKQSDISSY 406
Score = 21.4 bits (43), Expect(2) = 0.12
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 449 YLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRR--VEVVR 589
YL+ +E E +G E+ GA++L+ G+ ++ +E++R
Sbjct: 406 YLLISQNIEVLHGRENVNIIGGGLEAFVGALYLNIGLGTVKQFLLEIMR 454
>UniRef50_A6R9C5 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 380
Score = 42.7 bits (96), Expect(2) = 0.003
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Frame = +2
Query: 122 DRSLLLQAMTHAS-HHRNVLT---DCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTD 289
D+ L TH H+ N + Y+R+E LGDA ++ + TR +++ G L+
Sbjct: 136 DKQLQTAMFTHEGVHNPNTASLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQ 195
Query: 290 LRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQ 415
+R LV N A + +G + + + P + + +K + KI+
Sbjct: 196 IRELLVKNETLAEYTSLYGLDQKLQ-VPPNIRDQIKTWTKIK 236
Score = 21.4 bits (43), Expect(2) = 0.003
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +2
Query: 500 KALGDLFESVAGAIFL---DSGMSL 565
K GDLFE+ A+ L D+G+ L
Sbjct: 234 KIKGDLFEAYVAAVILSNRDNGVQL 258
>UniRef50_Q73NX5 Cluster: Ribonuclease 3; n=1; Treponema
denticola|Rep: Ribonuclease 3 - Treponema denticola
Length = 246
Score = 38.3 bits (85), Expect(2) = 0.003
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +2
Query: 113 RFRDRSLLLQAMTHAS---HHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGAL 283
+F+D LL A H S H N + +RLEFLGD++L + +LY+ G L
Sbjct: 26 KFKDLRLLDLAFHHRSFSNEHNNFHAN-NERLEFLGDSVLGLVAASYLYKSFEDRPEGEL 84
Query: 284 TDLRSALVNNTIFATLAARHGFHKY 358
++++ V+ + A++ Y
Sbjct: 85 AKIKASAVSEDALSKTASKLNISNY 109
Score = 25.8 bits (54), Expect(2) = 0.003
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 446 HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRR 574
+YL+ E + E L D E+V GA ++DSG ++
Sbjct: 108 NYLVLGRGEEMSGGREKKAILADALEAVIGAYYIDSGFKAAQK 150
>UniRef50_A6EDW5 Cluster: Ribonuclease III; n=1; Pedobacter sp.
BAL39|Rep: Ribonuclease III - Pedobacter sp. BAL39
Length = 242
Score = 44.8 bits (101), Expect = 0.003
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +2
Query: 68 KMVSGYEQLERVL-QYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRH 244
K + G+ +L Q FR RS+ + + + S N +RLEFLGDAIL ++
Sbjct: 22 KNILGFVPGNTILYQMAFRHRSVA-KVLKNGSRSSN------ERLEFLGDAILGSVVAEL 74
Query: 245 LYEDKRCHSPGALTDLRSALVNNTIFATLAARHGF 349
L+++ G LT++RS +VN LA + GF
Sbjct: 75 LFKNYPYKEEGFLTEMRSKIVNRANLNQLARKMGF 109
>UniRef50_Q0C3T9 Cluster: Ribonuclease III; n=1; Hyphomonas
neptunium ATCC 15444|Rep: Ribonuclease III - Hyphomonas
neptunium (strain ATCC 15444)
Length = 234
Score = 44.4 bits (100), Expect = 0.004
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRHLYED 256
++ + ++ ++F+D ++L +A+TH S + + QRLEFLGD +L+ +I L E
Sbjct: 11 KEAQEIIGFKFKDAAILERALTHPSAIPPSGDTVKLSNQRLEFLGDRVLNLIIAERLIER 70
Query: 257 KRCHSPGALTDLRSALV 307
++ S G L + LV
Sbjct: 71 RQSDSEGDLAPRLNRLV 87
>UniRef50_A7HCB5 Cluster: Ribonuclease III; n=3;
Cystobacterineae|Rep: Ribonuclease III -
Anaeromyxobacter sp. Fw109-5
Length = 377
Score = 44.4 bits (100), Expect = 0.004
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +2
Query: 56 GELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASH---HRNV--LTDCYQRLEFLGDAI 220
G+ V LE L DRS L A+TH S+ HR+ L D +RLEFLGDA+
Sbjct: 8 GQAGAPVDPVATLEARLGLCLGDRSTALAALTHKSYVNEHRDEPGLGD-NERLEFLGDAV 66
Query: 221 LDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLA 334
+D ++ L E G L+ +R+A+V+ + +A
Sbjct: 67 IDLAVSHRLMERFPAAREGDLSKMRAAVVDEQGLSEMA 104
>UniRef50_A3EU88 Cluster: DsRNA-specific ribonuclease; n=1;
Leptospirillum sp. Group II UBA|Rep: DsRNA-specific
ribonuclease - Leptospirillum sp. Group II UBA
Length = 247
Score = 44.4 bits (100), Expect = 0.004
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASH----HRNVLTDCYQRLEFLGDAILDYLITRHLYED 256
+LE L+YRFR LL +A TH S R +T +RLEFLGD +L ++ +L
Sbjct: 9 ELEDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYLMVT 68
Query: 257 KRCHSPGALTDLRSALVNNTIFATLAARHG 346
+ G L+ + +V+ A+++ G
Sbjct: 69 YPKYPEGILSKFKGRVVSEPTLASVSRALG 98
>UniRef50_Q8G7H1 Cluster: Ribonuclease 3; n=2; Bifidobacterium
longum|Rep: Ribonuclease 3 - Bifidobacterium longum
Length = 242
Score = 44.4 bits (100), Expect = 0.004
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 131 LLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
LL+QA+TH S H + Y+RLEFLGDA+L+ + T L+ + G L +R+ V
Sbjct: 27 LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 86
Query: 308 NNTIFATLA 334
+ + +A
Sbjct: 87 SEDALSAIA 95
>UniRef50_Q5LNK5 Cluster: Ribonuclease 3; n=28;
Alphaproteobacteria|Rep: Ribonuclease 3 - Silicibacter
pomeroyi
Length = 225
Score = 44.0 bits (99), Expect = 0.005
Identities = 30/89 (33%), Positives = 44/89 (49%)
Frame = +2
Query: 68 KMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHL 247
K+ + + E L Y F LL++A+TH S + D QRLEFLGD +L ++ L
Sbjct: 2 KLSAEMKAFEARLGYSFERPELLVRALTHGSISSSTRQD-NQRLEFLGDRVLGLVMATAL 60
Query: 248 YEDKRCHSPGALTDLRSALVNNTIFATLA 334
E + + G L +ALV A +A
Sbjct: 61 LEADKDATEGQLAPRFNALVRKETCAEVA 89
>UniRef50_Q4FLS9 Cluster: Ribonuclease 3; n=2; Candidatus
Pelagibacter ubique|Rep: Ribonuclease 3 - Pelagibacter
ubique
Length = 222
Score = 44.0 bits (99), Expect = 0.005
Identities = 26/96 (27%), Positives = 49/96 (51%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
+LE+ L+ +F D+ + ++++TH S + +++EFLGD +L +I + L E
Sbjct: 7 KLEKKLKLKFSDQKIFIKSLTHKSFDS---INNNEKIEFLGDRVLGLIIAKKLLELYPDE 63
Query: 269 SPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSP 376
G L ++LVN +A + KY ++P
Sbjct: 64 KEGVLDKKFASLVNKKKCLEIAKKIELEKYILVLNP 99
>UniRef50_Q5A694 Cluster: Probable ribonuclease III; n=2; Candida
albicans|Rep: Probable ribonuclease III - Candida
albicans (Yeast)
Length = 611
Score = 43.6 bits (98), Expect = 0.007
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
+RLEF GD+IL+ L T ++++ + G L+ +RS LV+N +A ++GF K R
Sbjct: 275 ERLEFYGDSILNNLATLIIFKEFPDSTEGDLSKIRSKLVSNKTLIKIAFQYGFDKKLR 332
>UniRef50_Q57E81 Cluster: Ribonuclease 3; n=19; Rhizobiales|Rep:
Ribonuclease 3 - Brucella abortus
Length = 245
Score = 43.6 bits (98), Expect = 0.007
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = +2
Query: 68 KMVSGYEQ---LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLIT 238
KMVS + LE +RF + L +A+TH+S + Y+RLEFLGD +L +
Sbjct: 11 KMVSANKTASILEERTGHRFLNLKRLERALTHSSVQAPARAN-YERLEFLGDRVLGLTVA 69
Query: 239 RHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHG 346
L+E S G L+ +ALVN A +A G
Sbjct: 70 EMLFEAFPEASEGELSVRLNALVNAETCAAIADEIG 105
>UniRef50_A1ZI45 Cluster: Ribonuclease III; n=2;
Flexibacteraceae|Rep: Ribonuclease III - Microscilla
marina ATCC 23134
Length = 248
Score = 43.2 bits (97), Expect = 0.009
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNV---LTDCYQRLEFLGDAILDYLITRHLYEDKR 262
+++++ ++ + +L A++H S +++ + +RLE+LGDAIL ++ +L++
Sbjct: 24 IKQIIGHKPFNLALYQLALSHTSASKSLQDGFKESNERLEYLGDAILGAIVADYLFKKYP 83
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
G LT++R+ +VN L+ + G R+
Sbjct: 84 FKEEGFLTEIRARIVNRESLNQLSRKMGIQDLIRY 118
>UniRef50_A4U1G9 Cluster: Ribonuclease III; n=2;
Magnetospirillum|Rep: Ribonuclease III -
Magnetospirillum gryphiswaldense
Length = 229
Score = 42.7 bits (96), Expect = 0.012
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 104 LQYRFRDRSLLLQAMTHASHHRNVL---TDCYQRLEFLGDAILDYLITRHLYEDKRCHSP 274
L + F LL QA+TH S + Y+RLEFLGD +L ++ L+ +
Sbjct: 13 LGHEFAQSQLLTQALTHPSVAQGRAPRRNTPYERLEFLGDRVLGLVVADMLFHRFPTEAE 72
Query: 275 GALTDLRSALVNNTIFATLAARHG 346
GAL +ALV A +A + G
Sbjct: 73 GALARRHAALVRRESLAVVAGQIG 96
>UniRef50_Q6KHN3 Cluster: Ribonuclease 3; n=1; Mycoplasma
mobile|Rep: Ribonuclease 3 - Mycoplasma mobile
Length = 246
Score = 42.7 bits (96), Expect = 0.012
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTH---ASHHRNVLTDCYQRLEFLGDAILDYLITRH 244
+ G E + F+D +QA+TH A+ H N+ + Y LEF+GDAIL +
Sbjct: 7 IEGLENFLTLNNIIFKDIKYYIQALTHKTYANEHANI--ESYDILEFIGDAILQMKSSIF 64
Query: 245 LYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEEN 424
+++ + + G + +R+ V ++ + L+ + G K +S G +E L++ VKI +
Sbjct: 65 IFQHFQNITEGEASLIRAKNVCSSGLSELSKKLGLSKLLL-ISKG-SEHLRENVKINADL 122
Query: 425 GHSISEEHYLIHEDE 469
S YL DE
Sbjct: 123 FESFVAAIYLDLGDE 137
>UniRef50_Q9A805 Cluster: Ribonuclease 3; n=4;
Alphaproteobacteria|Rep: Ribonuclease 3 - Caulobacter
crescentus (Caulobacter vibrioides)
Length = 231
Score = 42.7 bits (96), Expect = 0.012
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +2
Query: 62 LEKMVSGYEQLERVLQYRFRDRSLLLQAMTHAS--HHRNVLTDCYQRLEFLGDAILDYLI 235
+++ V+ LER + +RF DR LL +A+THAS + D + LEF+GD +L L
Sbjct: 1 MDRRVAAVGDLERRIGHRFEDRELLERALTHASVGDGAKKVRD-NEVLEFIGDRVLGLLA 59
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAAR 340
L + G L +ALV+ A +A +
Sbjct: 60 AEALAQRFPKAKEGELAPRLNALVSRETCARVARK 94
>UniRef50_A7CV23 Cluster: Ribonuclease III; n=1; Opitutaceae
bacterium TAV2|Rep: Ribonuclease III - Opitutaceae
bacterium TAV2
Length = 250
Score = 42.3 bits (95), Expect = 0.016
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHHRNV--LTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
L+ + ++F +LL A+TH S ++ D QRLE LGDA+L L+T LY
Sbjct: 24 LQMRIGHKFTTPALLETAITHPSWLQDNPGAPDNNQRLELLGDAVLQLLLTHELYTLFPT 83
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
G L+ R+ L A LA G R
Sbjct: 84 DREGPLSKRRAVLSRGGFLAQLAREVGLDTVLR 116
>UniRef50_A7I515 Cluster: Ribonuclease III; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribonuclease III -
Methanoregula boonei (strain 6A8)
Length = 154
Score = 42.3 bits (95), Expect = 0.016
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +2
Query: 71 MVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLT---DCYQRLEFLGDAILDYLITR 241
M S +LE L + +DR++L A+T ++ T DC L +GDA+L ++
Sbjct: 1 MPSPLSELETRLGFTIKDRTILDAALTRQAYINENPTAGNDCMDPLATVGDAVLGAVVAT 60
Query: 242 HLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
LYE G LT + VN A + HK+ R
Sbjct: 61 RLYE-SGIRDKGTLTSEKIRGVNRDKTRAFAEKFQLHKFIR 100
>UniRef50_Q8CPI1 Cluster: Ribonuclease 3; n=16; Staphylococcus|Rep:
Ribonuclease 3 - Staphylococcus epidermidis (strain ATCC
12228)
Length = 245
Score = 42.3 bits (95), Expect = 0.016
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Frame = +2
Query: 104 LQYRFRDRSLLLQAMTHASHHRNV---LTDCYQRLEFLGDAILDYLITRHLYEDKRCHSP 274
L F++ L QA +H+S + + +RLEFLGDA+L+ ++R+L+ D+ H P
Sbjct: 24 LGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF-DRHPHLP 82
Query: 275 -GALTDLRSALV 307
G LT +R+ +V
Sbjct: 83 EGNLTKMRATIV 94
>UniRef50_Q06VS3 Cluster: Ribonuclease III; n=1; Trichoplusia ni
ascovirus 2c|Rep: Ribonuclease III - Trichoplusia ni
ascovirus 2c
Length = 678
Score = 41.9 bits (94), Expect = 0.021
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Frame = +2
Query: 188 YQRLEFLGDAILD-YLIT--RHLYED--KRCHSPGALTDLRSALVNNTIFATLAARHGFH 352
Y+ E++GDAI++ Y+I RH Y H+ G +T LRS V + + R G H
Sbjct: 158 YEFFEYIGDAIINRYIIEYIRHKYVGIANTSHNIGIMTKLRSVFVGKRNLSKCSIRIGLH 217
Query: 353 KYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVA 532
K+ P L++Y + ++ + I + DE A E+ + DL ES
Sbjct: 218 KFLNCAFPLDMVRLEQYAQTIHDSPNEIDTQF-----DEPNFALCRELESLMEDLLESFI 272
Query: 533 GAIF 544
G ++
Sbjct: 273 GVLW 276
>UniRef50_Q26GJ2 Cluster: Ribonuclease III (Rnase III),
double-stranded RNA binding motif; n=14;
Bacteroidetes|Rep: Ribonuclease III (Rnase III),
double-stranded RNA binding motif - Flavobacteria
bacterium BBFL7
Length = 246
Score = 41.9 bits (94), Expect = 0.021
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
Y+RLEFLGDAIL +I ++Y + G LT +RS +V+ L G + +
Sbjct: 58 YERLEFLGDAILGSVIAEYIYNEVPHGDEGYLTKMRSKIVSREHLNELGLDFGLIDFAKT 117
Query: 368 MSPGLN 385
P N
Sbjct: 118 QVPERN 123
>UniRef50_Q5KKA7 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 839
Score = 41.9 bits (94), Expect = 0.021
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLY-----EDKRCHSPGALT 286
D L LQA+T A+ NV Y+RLE LGD +L ++ T H Y D
Sbjct: 499 DPELALQAIT-AAEGLNVPRWTYERLEILGDTLLKFMTTLHFYLLGGGADSEDDMNKVWQ 557
Query: 287 DLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHED 466
D R L++N A + G KY R+ + E + ++ G ++ D
Sbjct: 558 D-RHMLISNRTLTANAVKQGLVKYVRNKKFKVKEWTPRDWELDLLPGQFAPKKTMPTSFD 616
Query: 467 EMEQAEDVEVPKALGDLFESVAGAIFL 547
E V K + D+ E++ GA ++
Sbjct: 617 GPESR--VLGDKVIADIIEAIIGASYM 641
>UniRef50_A1CZL8 Cluster: RNase3 domain protein; n=3;
Trichocomaceae|Rep: RNase3 domain protein - Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 373
Score = 41.9 bits (94), Expect = 0.021
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
D SL L TH ++ + Y RLE LGDA ++ + TR ++ S G ++ +R
Sbjct: 141 DSSLELAVFTHPGLSKDSKST-YDRLEILGDAYIELIATRFIWSRFEDISSGQISQIREL 199
Query: 302 LVNNTIFATLAARHG 346
LV N + A +G
Sbjct: 200 LVKNETLSEFATLYG 214
>UniRef50_Q83I82 Cluster: Ribonuclease 3; n=3; Tropheryma
whipplei|Rep: Ribonuclease 3 - Tropheryma whipplei
(strain TW08/27) (Whipple's bacillus)
Length = 223
Score = 41.9 bits (94), Expect = 0.021
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +2
Query: 131 LLLQAMTHASHH-RNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
LL A H S N +RLEFLGDA+L +++ +L+E ++ G L+ RS +V
Sbjct: 20 LLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSYIV 79
Query: 308 NNTIFATLA 334
+ T A +A
Sbjct: 80 SGTSIAQIA 88
>UniRef50_Q4AEV8 Cluster: Ribonuclease III; n=1; Chlorobium
phaeobacteroides BS1|Rep: Ribonuclease III - Chlorobium
phaeobacteroides BS1
Length = 208
Score = 41.5 bits (93), Expect = 0.028
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +2
Query: 143 AMTHASHHRNVLTDCY---QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNN 313
A+ H S + V+ +RLE+LGDAIL ++ +L++ + G LT++RS +V+
Sbjct: 5 ALRHKSATKKVINGLRLNNERLEYLGDAILSAVVADYLFKRFPYKNEGFLTEMRSKIVSR 64
Query: 314 TIFATLAARHGFHK 355
T LA + G K
Sbjct: 65 TSLNKLANKLGLVK 78
Score = 33.9 bits (74), Expect = 5.7
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = +2
Query: 230 LITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG-LNEVLKKYV 406
L RH K+ + L + R + + I + + A + F K F + + G L E+ K V
Sbjct: 4 LALRHKSATKKVINGLRLNNERLEYLGDAILSAVVADYLF-KRFPYKNEGFLTEMRSKIV 62
Query: 407 KIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVV 586
N ++ + L+ + + A GD FE++ GAI+LD G R+V +
Sbjct: 63 SRTSLN--KLANKLGLVKLISIGGEHQQKGKSAGGDAFEAIIGAIYLDKGYEFTRKVFIN 120
Query: 587 R 589
R
Sbjct: 121 R 121
>UniRef50_A7LVV6 Cluster: Putative uncharacterized protein; n=1;
Bacteroides ovatus ATCC 8483|Rep: Putative
uncharacterized protein - Bacteroides ovatus ATCC 8483
Length = 352
Score = 41.5 bits (93), Expect = 0.028
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +2
Query: 98 RVLQYRFRDRSLLLQAMTHASHHRNVLTDC-----YQRLEFLGDAILDYLITRHLYEDKR 262
R+L + R+ L QA+ H S +V +D +RLEFLGDAILD ++ +Y+
Sbjct: 38 RILGFYPRNIQLYEQALLHKS--TSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
G LT+ RS +V LA G K ++
Sbjct: 96 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKY 130
>UniRef50_A5ZF82 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides caccae ATCC 43185
Length = 329
Score = 41.5 bits (93), Expect = 0.028
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +2
Query: 98 RVLQYRFRDRSLLLQAMTHASHHRNVLTDC-----YQRLEFLGDAILDYLITRHLYEDKR 262
R+L + R+ L QA+ H S +V +D +RLEFLGDAILD ++ +Y+
Sbjct: 38 RILGFYPRNIQLYEQALLHKSS--SVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95
Query: 263 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
G LT+ RS +V LA G K ++
Sbjct: 96 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKY 130
>UniRef50_A3I0H3 Cluster: Putative ribonuclease III; n=1;
Algoriphagus sp. PR1|Rep: Putative ribonuclease III -
Algoriphagus sp. PR1
Length = 250
Score = 41.5 bits (93), Expect = 0.028
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHK 355
+RLEFLGDAIL ++ +L++ G LT+ RS LVN + G K
Sbjct: 65 ERLEFLGDAILGAVVAEYLFQKYPYRDEGFLTETRSKLVNRESLNATGVKIGLKK 119
>UniRef50_Q9P6D6 Cluster: Related to Ribonuclease III; n=2;
Sordariales|Rep: Related to Ribonuclease III -
Neurospora crassa
Length = 352
Score = 41.5 bits (93), Expect = 0.028
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
D +L A+TH N Y+RLE++GDA L+ + + +Y+ G R
Sbjct: 67 DPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRREM 126
Query: 302 LVNNTIFATLAARHGFHK 355
L+ NT + +G K
Sbjct: 127 LIRNTTLGEFSVYYGLDK 144
>UniRef50_Q027L3 Cluster: Ribonuclease III; n=1; Solibacter usitatus
Ellin6076|Rep: Ribonuclease III - Solibacter usitatus
(strain Ellin6076)
Length = 271
Score = 41.1 bits (92), Expect = 0.037
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHAS---HHR------NVLTDCYQRLEFLGDAILDYLITRH 244
LE L YRF D LL +A+TH+S +R + L D ++LEFLGD++L +LI
Sbjct: 8 LELKLDYRFNDPELLRRALTHSSLANENRPGAGVGSPLND-NEQLEFLGDSVLGFLIAEA 66
Query: 245 LYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
L + G L+ L++ LV+ +A R Y
Sbjct: 67 LVRRFPEYHEGDLSRLKAHLVSAAHLHGVARRLDLGSY 104
>UniRef50_Q5KKA8 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 875
Score = 41.1 bits (92), Expect = 0.037
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = +2
Query: 59 ELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLIT 238
+LE M+ YE ++ L LQA+T A +NV Y+RLE LGD +L + IT
Sbjct: 428 QLECMLIAYEMSTKLFGSLLHPE-LALQALT-APSSQNVTPWTYERLEILGDTLLKFFIT 485
Query: 239 RHLY 250
H+Y
Sbjct: 486 IHVY 489
Score = 35.5 bits (78), Expect = 1.9
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 8/163 (4%)
Frame = +2
Query: 101 VLQYRFRDRSLL--LQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSP 274
+L Y+F+ + + +M++ H R + + + LG+A+LD + L P
Sbjct: 605 ILGYKFKRKRRYEDVISMSNQPHARRIR----ENYKMLGNAVLDLHVIEFLLAKYPEEGP 660
Query: 275 GALTDLRSALVNNTIFATLAARHGFHKYFR------HMSPGLNEVLKKYVKIQEENGHSI 436
G+L+++++ + LA G + G + K Q + G S
Sbjct: 661 GSLSNMKTFRTTEGLRCALATELGLQDLLKDGDERAERELGRATYFMRDAKAQADAGLS- 719
Query: 437 SEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
EE IH + V V G + E + GAIF DSG SL
Sbjct: 720 DEEQGGIH-----YWDGVAVNHFTGSIIEVIYGAIFQDSGFSL 757
>UniRef50_A7I5W5 Cluster: Ribonuclease III; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribonuclease III -
Methanoregula boonei (strain 6A8)
Length = 196
Score = 41.1 bits (92), Expect = 0.037
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTD---CYQRLEF--LGDAILDYLITRHLYE 253
+LER++ Y F ++ L++A+TH+++ V+ C + + LGDA+L + L E
Sbjct: 12 ELERIIGYHFFEQQHLIRALTHSAYANEVIQKNRICLTQDAYSTLGDAVLKTSLILFLME 71
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 364
K GA+T + L +N A + R ++ R
Sbjct: 72 -KGLQEKGAITRAKEQLEDNASLAQIGRRLKIRRFVR 107
>UniRef50_Q31MP4 Cluster: Ribonuclease III; n=2; Synechococcus
elongatus|Rep: Ribonuclease III - Synechococcus sp.
(strain PCC 7942) (Anacystis nidulans R2)
Length = 247
Score = 40.7 bits (91), Expect = 0.049
Identities = 26/75 (34%), Positives = 35/75 (46%)
Frame = +2
Query: 140 QAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTI 319
Q + A H + D Y RLEFLGDA+L I L S G + LRS L ++
Sbjct: 38 QQIDRALTHPSAAEDHYDRLEFLGDAVLRLAIADFLDRHYPDLSVGDCSALRSELGSDRT 97
Query: 320 FATLAARHGFHKYFR 364
A +AA + + R
Sbjct: 98 LAAIAASYNLERVLR 112
>UniRef50_O32367 Cluster: Ribonuclease III; n=1; Campylobacter
jejuni|Rep: Ribonuclease III - Campylobacter jejuni
Length = 73
Score = 40.7 bits (91), Expect = 0.049
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +2
Query: 110 YRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYED--KRCHSPGAL 283
Y F D + + A+TH S ++ + RL +GDA+LD ++ +L+ + +RC L
Sbjct: 1 YAFPDTNHFIPALTHKSFKKSYNNE---RLVLIGDAVLDLVVGEYLFHNIRQRCRRRFIL 57
Query: 284 TDLRSALVNNTIFATLA 334
+ L +VN FAT+A
Sbjct: 58 S-LEQVVVNEKSFATIA 73
>UniRef50_A7DEA6 Cluster: Ribonuclease III; n=3;
Alphaproteobacteria|Rep: Ribonuclease III -
Methylobacterium extorquens PA1
Length = 256
Score = 40.7 bits (91), Expect = 0.049
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 92 LERVLQYRFRDRSLLLQAMTHASHH-RNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
LE + + F D +LL A+TH S ++ YQRLEFLGD +L + LY+
Sbjct: 27 LEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKALPGA 86
Query: 269 SPGALTDLRSALVNNTIFATLA 334
G L+ + LV A +A
Sbjct: 87 EEGELSRRLAGLVRRETCAVVA 108
>UniRef50_Q5AQL5 Cluster: ER lumen protein retaining receptor; n=6;
Pezizomycotina|Rep: ER lumen protein retaining receptor
- Emericella nidulans (Aspergillus nidulans)
Length = 1073
Score = 40.7 bits (91), Expect = 0.049
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +2
Query: 119 RDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSP-GALTDLR 295
+D L TH ++ T Y RLE LGDA ++ LI+ L +K H P G ++ +R
Sbjct: 116 KDDRLERAVFTHPGVAKDSRTT-YDRLEILGDAYIE-LISTKLIWNKFQHIPSGRISQIR 173
Query: 296 SALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEME 475
LV N A A ++G K + N+ K+++K + + + L H D
Sbjct: 174 ELLVKNETLAEYATQYGIDKKASVPAELYNQP-KRWIKTKGDIFEAYVAAVILSHPDGYS 232
Query: 476 QAE 484
AE
Sbjct: 233 VAE 235
>UniRef50_Q9NG98 Cluster: DNA topoisomerase 3-alpha; n=6;
Eukaryota|Rep: DNA topoisomerase 3-alpha - Drosophila
melanogaster (Fruit fly)
Length = 1250
Score = 40.7 bits (91), Expect = 0.049
Identities = 21/92 (22%), Positives = 33/92 (35%)
Frame = -1
Query: 819 IRGXGXXXXPGXXXXGGGXNXQXXNXRKAPXXAGXAGXGXAETWXVXGLGPRXGXXKRGX 640
+RG G PG G G P G G G + W G G G
Sbjct: 768 VRGGGGGPGPGPGGGGSGRGAGSGGWSSGPGGGGSGGGGGSGGWGSGTGGGGSGGWGSGT 827
Query: 639 GXGPRXXASSSRPNQAARTTSTRRPSDMPESR 544
G G +P ++ ++T++P + P+ +
Sbjct: 828 GGGGLGGGKGKKPGGESKKSATKKPPNEPKPK 859
>UniRef50_Q02555 Cluster: Ribonuclease 3; n=2; Saccharomyces
cerevisiae|Rep: Ribonuclease 3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 471
Score = 40.7 bits (91), Expect = 0.049
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHK 355
+RLEFLGD+IL+ ++T +Y +S G L+ LR LV+N + + FH+
Sbjct: 238 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHE 292
>UniRef50_A4MAM8 Cluster: Ribonuclease III; n=1; Petrotoga mobilis
SJ95|Rep: Ribonuclease III - Petrotoga mobilis SJ95
Length = 253
Score = 40.3 bits (90), Expect = 0.065
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +2
Query: 128 SLLLQAMTHASH---HRNVLT--DCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDL 292
S+L +A+ H S+ + N+ D +RLEFLGDA+L+ +I+ LY + S G ++
Sbjct: 33 SVLFEALCHKSYVFDNENIQRKLDSNERLEFLGDAVLELVISEFLYNNYHL-SEGEMSKA 91
Query: 293 RSALVNNTIFATLAAR 340
R+ + + I A +A +
Sbjct: 92 RAIIGSEIILAEVALK 107
>UniRef50_Q9X0I6 Cluster: Ribonuclease 3; n=3; Thermotogaceae|Rep:
Ribonuclease 3 - Thermotoga maritima
Length = 240
Score = 40.3 bits (90), Expect = 0.065
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASH--HRNVL----TDCYQRLEFLGDAILDYLITRHL 247
E+ ++ F++ LL +A+ H+S+ +N + ++LEFLGDA+L+ + L
Sbjct: 10 EEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEIL 69
Query: 248 YEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
Y+ G L ++SA + + A ++ + K+
Sbjct: 70 YKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKF 106
>UniRef50_Q8A2E8 Cluster: Ribonuclease 3; n=6; Bacteroidales|Rep:
Ribonuclease 3 - Bacteroides thetaiotaomicron
Length = 311
Score = 40.3 bits (90), Expect = 0.065
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
+RLEFLGDAILD ++ +Y+ G LT+ RS +V LA G K ++
Sbjct: 59 ERLEFLGDAILDAIVGDIVYKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKY 117
>UniRef50_Q7NAZ2 Cluster: Rnc; n=1; Mycoplasma gallisepticum|Rep:
Rnc - Mycoplasma gallisepticum
Length = 669
Score = 39.9 bits (89), Expect = 0.086
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 140 QAMTHASHHRNV-LTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNT 316
+A+TH S+ + L YQRLEFLGDAI++ ++ +L+ S G +T R ++ +
Sbjct: 465 EALTHNSYANEMHLKYNYQRLEFLGDAIINKIVAEYLFNHSD-SSEGEMTKDRIKIIQSN 523
Query: 317 IFATLAARHGFHKYFR 364
A + Y R
Sbjct: 524 TLIKAATQLELINYIR 539
>UniRef50_Q2RJX2 Cluster: Ribonuclease III; n=1; Moorella
thermoacetica ATCC 39073|Rep: Ribonuclease III -
Moorella thermoacetica (strain ATCC 39073)
Length = 233
Score = 39.9 bits (89), Expect = 0.086
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 143 AMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTI 319
A+TH ++ + L QRLEFLGDA+L ++ +LY+ G LT +R+A+V
Sbjct: 29 ALTHPTYAFEHHLPGDNQRLEFLGDAVLGLVVATYLYQHFPQLPEGDLTRMRAAVVCEAS 88
Query: 320 FATLAAR 340
+A R
Sbjct: 89 LVKVARR 95
>UniRef50_Q6CC90 Cluster: Similarities with sp|Q02555 Saccharomyces
cerevisiae RNT1; n=1; Yarrowia lipolytica|Rep:
Similarities with sp|Q02555 Saccharomyces cerevisiae
RNT1 - Yarrowia lipolytica (Candida lipolytica)
Length = 467
Score = 39.9 bits (89), Expect = 0.086
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
Y+RLEF+GD+I++ ++T+ +Y+ L+ LR ++ N + AA +GF R
Sbjct: 190 YERLEFVGDSIVNNILTKIIYDVFPGDDQSHLSFLRGQVIANIVLCRWAAIYGFPSKLRV 249
Query: 368 MSPGLN 385
S L+
Sbjct: 250 ASSVLS 255
>UniRef50_Q820I0 Cluster: Ribonuclease 3; n=4; Proteobacteria|Rep:
Ribonuclease 3 - Nitrosomonas europaea
Length = 245
Score = 39.9 bits (89), Expect = 0.086
Identities = 27/81 (33%), Positives = 42/81 (51%)
Frame = +2
Query: 104 LQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGAL 283
L Y F+ LL +A+TH R++ +R EFLGD++L+ ++ L++ G L
Sbjct: 31 LGYTFKQPDLLREALTH----RSLGFPNNERFEFLGDSVLNCAVSTLLFKRFPSLPEGDL 86
Query: 284 TDLRSALVNNTIFATLAARHG 346
T LR+ VN LA+ G
Sbjct: 87 TRLRANFVNQQALHRLASALG 107
>UniRef50_Q6NGH3 Cluster: Ribonuclease 3; n=6; Corynebacterium|Rep:
Ribonuclease 3 - Corynebacterium diphtheriae
Length = 249
Score = 39.9 bits (89), Expect = 0.086
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 125 RSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
R LL+ A+TH S + N + +RLEFLGD++L + LY+ ++ +R++
Sbjct: 36 RELLVLALTHRSFANENGMLPNNERLEFLGDSVLGLSVAGQLYQQYTSSPESDISKMRAS 95
Query: 302 LVNNTIFATLA 334
+V+ A +A
Sbjct: 96 IVSRYGLADIA 106
>UniRef50_Q7NH89 Cluster: Ribonuclease III; n=3; Cyanobacteria|Rep:
Ribonuclease III - Gloeobacter violaceus
Length = 242
Score = 39.1 bits (87), Expect = 0.15
Identities = 26/68 (38%), Positives = 34/68 (50%)
Frame = +2
Query: 131 LLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVN 310
LL +A+ H S + RLEFLGD IL L LY + G +T +RS LV+
Sbjct: 33 LLHRALIHPSWSAQEGGEDNDRLEFLGDEILRLLAAEFLYRADPELTVGEMTAVRSVLVS 92
Query: 311 NTIFATLA 334
+ A LA
Sbjct: 93 DVALAELA 100
>UniRef50_Q7R2M2 Cluster: GLP_546_48378_50642; n=2; Giardia
intestinalis|Rep: GLP_546_48378_50642 - Giardia lamblia
ATCC 50803
Length = 754
Score = 39.1 bits (87), Expect = 0.15
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +2
Query: 179 TDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNN 313
TD +QRLE LGDA+L +++T L S G L +L+ LV N
Sbjct: 329 TDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRN 373
Score = 37.5 bits (83), Expect = 0.46
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAAR 340
YQ+LE LGDA L + HL+ + GALT +R + N++ L R
Sbjct: 645 YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKR 695
>UniRef50_Q2U9V4 Cluster: Predicted protein; n=3;
Eurotiomycetidae|Rep: Predicted protein - Aspergillus
oryzae
Length = 234
Score = 39.1 bits (87), Expect = 0.15
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHK 355
Y RLE LGDA ++ + T+ +++ R G ++ +R LV N A AA +G +
Sbjct: 23 YDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLVKNETLAEYAAGYGLDR 78
>UniRef50_Q95JC9 Cluster: Basic proline-rich protein precursor
[Contains: Proline-rich peptide SP-A (PRP-SP-A);
Proline-rich peptide SP-B (PRP-SP-B); Parotid hormone
(PH-Ab)]; n=10; Eukaryota|Rep: Basic proline-rich
protein precursor [Contains: Proline-rich peptide SP-A
(PRP-SP-A); Proline-rich peptide SP-B (PRP-SP-B);
Parotid hormone (PH-Ab)] - Sus scrofa (Pig)
Length = 676
Score = 39.1 bits (87), Expect = 0.15
Identities = 27/88 (30%), Positives = 29/88 (32%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
P P PL P GP+P + P P P G PPP P P
Sbjct: 249 PGPPPLGPPPP-GPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPG 307
Query: 812 PRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
R P G P PP P P G P
Sbjct: 308 ARPPPGPP--PPGPPPPGPAPPGARPPP 333
Score = 39.1 bits (87), Expect = 0.15
Identities = 24/81 (29%), Positives = 26/81 (32%)
Frame = +2
Query: 626 RGPXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXX 805
R P P P GP+P + P P P G PPP P
Sbjct: 589 RPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAP 648
Query: 806 PXPRIPHGXPXXPPAPXEXXP 868
P R P G P PP P P
Sbjct: 649 PGARPPPGPPPPPPGPSPPRP 669
Score = 36.7 bits (81), Expect = 0.81
Identities = 26/90 (28%), Positives = 28/90 (31%)
Frame = +2
Query: 626 RGPXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXX 805
R P P P GP+P + P P P G PPP P
Sbjct: 78 RPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAP 137
Query: 806 PXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P R P G P PP P P G P
Sbjct: 138 PGARPPPGPP--PPGPPPPGPAPPGARPPP 165
Score = 36.7 bits (81), Expect = 0.81
Identities = 26/90 (28%), Positives = 28/90 (31%)
Frame = +2
Query: 626 RGPXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXX 805
R P P P GP+P + P P P G PPP P
Sbjct: 141 RPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAP 200
Query: 806 PXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P R P G P PP P P G P
Sbjct: 201 PGARPPPGPP--PPGPPPPGPAPPGARPPP 228
Score = 36.7 bits (81), Expect = 0.81
Identities = 26/90 (28%), Positives = 28/90 (31%)
Frame = +2
Query: 626 RGPXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXX 805
R P P P GP+P + P P P G PPP P
Sbjct: 204 RPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPLGPPPPGPAP 263
Query: 806 PXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P R P G P PP P P G P
Sbjct: 264 PGARPPPGPP--PPGPPPPGPAPPGARPPP 291
Score = 36.7 bits (81), Expect = 0.81
Identities = 26/90 (28%), Positives = 28/90 (31%)
Frame = +2
Query: 626 RGPXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXX 805
R P P P GP+P + P P P G PPP P
Sbjct: 267 RPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAP 326
Query: 806 PXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P R P G P PP P P G P
Sbjct: 327 PGARPPPGPP--PPGPPPPGPAPPGARPPP 354
Score = 36.7 bits (81), Expect = 0.81
Identities = 26/90 (28%), Positives = 28/90 (31%)
Frame = +2
Query: 626 RGPXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXX 805
R P P P GP+P + P P P G PPP P
Sbjct: 330 RPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAP 389
Query: 806 PXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P R P G P PP P P G P
Sbjct: 390 PGARPPPGPP--PPGPPPPGPAPPGARPPP 417
Score = 36.7 bits (81), Expect = 0.81
Identities = 26/90 (28%), Positives = 28/90 (31%)
Frame = +2
Query: 626 RGPXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXX 805
R P P P GP+P + P P P G PPP P
Sbjct: 463 RPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAP 522
Query: 806 PXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P R P G P PP P P G P
Sbjct: 523 PGARPPPGPP--PPGPPPPGPAPPGARPPP 550
Score = 36.7 bits (81), Expect = 0.81
Identities = 26/90 (28%), Positives = 28/90 (31%)
Frame = +2
Query: 626 RGPXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXX 805
R P P P GP+P + P P P G PPP P
Sbjct: 526 RPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAP 585
Query: 806 PXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P R P G P PP P P G P
Sbjct: 586 PGARPPPGPP--PPGPPPPGPAPPGARPPP 613
Score = 34.3 bits (75), Expect = 4.3
Identities = 27/94 (28%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVS------ANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPG 793
P P P P GP+P + A P P P G PPP P
Sbjct: 417 PPPPPPADEPQQGPAPSGDKPKKKPPPPAGPPPPGPPSPGPAPPGARPPPGPPPPGPPPP 476
Query: 794 XXXXPXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P R P G P PP P P G P
Sbjct: 477 GPAPPGARPPPGPP--PPGPPPPGPAPPGARPPP 508
Score = 33.5 bits (73), Expect = 7.5
Identities = 22/74 (29%), Positives = 22/74 (29%)
Frame = +1
Query: 631 PXPXSPFXXTXSRAEPXHRPSFGXPXTGXACXGXRLSPVXXLXVVPAPXXXXPGPXXXPX 810
P P P P P G P G A G R P P P PG P
Sbjct: 597 PGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPG 656
Query: 811 XPNPPRGXXXXXXP 852
P PP G P
Sbjct: 657 PPPPPPGPSPPRPP 670
>UniRef50_A7BCY7 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 240
Score = 38.7 bits (86), Expect = 0.20
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDCY-QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRS 298
D LL A+ H S+ +RLEFLGD++L +I + LYE + L+ +R+
Sbjct: 27 DAPLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRA 86
Query: 299 ALVNNTIFATLAARHG 346
A V+ A A R G
Sbjct: 87 ATVSQQPLAAAARRIG 102
>UniRef50_Q6P0D5 Cluster: WW domain-binding protein 11; n=7;
Euteleostomi|Rep: WW domain-binding protein 11 - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 640
Score = 38.7 bits (86), Expect = 0.20
Identities = 29/92 (31%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Frame = +2
Query: 629 GPXPXPLFXXPX--LGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXP-PPXXLSPGXX 799
GP P P P GP P A P P A R L P PP PG
Sbjct: 379 GPPPAPPMRPPGPPSGPPPGPPP-GAPPFLRPPGLPSALRGPMPRLLPPGPPPGRPPGPP 437
Query: 800 XXPXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P P +P G P P P P G P
Sbjct: 438 PGPPPGLPPGPPPRGPPPRLPPPAPPGMPPPP 469
>UniRef50_UPI0000D56EFA Cluster: PREDICTED: similar to Protein
cappuccino; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Protein cappuccino - Tribolium castaneum
Length = 1011
Score = 38.3 bits (85), Expect = 0.26
Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Frame = +2
Query: 632 PXPXPLFXXPXLG--PSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXX 805
P P P P +G P P + A P P P + PPP + PG
Sbjct: 458 PPPPPPPPMPGIGAPPPPPMPGIGAPPPPPMPGIGAHPPPPMPGIVGPPPPPM-PGIGGP 516
Query: 806 PXPRIPHGXPXXPPAPXEXXP 868
P P +P P PP P P
Sbjct: 517 PPPPMPGTGPPPPPPPMGGVP 537
>UniRef50_Q6FJM4 Cluster: Candida glabrata strain CBS138 chromosome
M complete sequence; n=1; Candida glabrata|Rep: Candida
glabrata strain CBS138 chromosome M complete sequence -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 449
Score = 38.3 bits (85), Expect = 0.26
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNN 313
+RLEFLGD+IL+ ++T +Y + G LT+LR LV N
Sbjct: 215 ERLEFLGDSILNTVMTMIIYNKFPSLNEGNLTELRKKLVKN 255
>UniRef50_P75233 Cluster: Ribonuclease 3; n=3; Mycoplasma|Rep:
Ribonuclease 3 - Mycoplasma pneumoniae
Length = 282
Score = 38.3 bits (85), Expect = 0.26
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 188 YQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 307
Y RLEFLGDA++D+++ + L+E ++ G LT + +V
Sbjct: 55 YDRLEFLGDALIDFIVAKKLFELYPNYNEGMLTRTKIEIV 94
>UniRef50_Q0BTG2 Cluster: Ribonuclease III; n=4;
Rhodospirillales|Rep: Ribonuclease III - Granulobacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
Length = 258
Score = 37.9 bits (84), Expect = 0.35
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHAS-----HHRNVLT-----DCYQRLEFLGDAILDYLI 235
E E +L +RF R LL +A+TH S H + + +RLEF+GD +L ++
Sbjct: 20 EAAEALLSHRFARRDLLAEALTHRSAVKIMHGQTGQSLPRGAGSNERLEFVGDRVLGLVV 79
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG 379
L E G L + LV+ + A +A + G + ++PG
Sbjct: 80 AEWLVERFPLEQEGELGRRLAHLVSQPVLAGIAEQSGLPQIL-SVAPG 126
>UniRef50_Q8EXX3 Cluster: Ribonuclease 3; n=4; Leptospira|Rep:
Ribonuclease 3 - Leptospira interrogans
Length = 247
Score = 37.9 bits (84), Expect = 0.35
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHASH---HRNVLTDCYQRLEFLGDAILDYLITRH 244
V ++L + + +F A H+S+ ++ +L D +RLEFLGD++L + R
Sbjct: 18 VRSLQKLSKKIGIKFSKVEYYNTAFIHSSYKNENQEILED-NERLEFLGDSVLGLVAARS 76
Query: 245 LYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
L+ + G L+ ++S +V+ I +++ + +Y
Sbjct: 77 LFRKYPKANEGELSRIKSRIVSTPILNSISEKLELSEY 114
Score = 34.3 bits (75), Expect = 4.3
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Frame = +2
Query: 221 LDYLITRHLYEDKRCHSPGALTDL-RSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLK 397
++Y T ++ + + L D R + +++ +AAR F KY + L+ +
Sbjct: 35 VEYYNTAFIHSSYKNENQEILEDNERLEFLGDSVLGLVAARSLFRKYPKANEGELSRIKS 94
Query: 398 KYVKIQEENGHSISEE----HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+ V N SISE+ YL+ + + K +LFES+ GAI+LD G +
Sbjct: 95 RIVSTPILN--SISEKLELSEYLLLGKGEKNSLGKGRRKLSANLFESLVGAIYLDQGFEI 152
Query: 566 GRR 574
+
Sbjct: 153 AEK 155
>UniRef50_Q1GTU3 Cluster: Ribonuclease III; n=1; Sphingopyxis
alaskensis|Rep: Ribonuclease III - Sphingopyxis
alaskensis (Sphingomonas alaskensis)
Length = 226
Score = 37.5 bits (83), Expect = 0.46
Identities = 26/73 (35%), Positives = 35/73 (47%)
Frame = +2
Query: 122 DRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSA 301
D +L A+TH S R D YQRLEFLGD +L ++ LY S G ++
Sbjct: 20 DLTLYDLALTHGSTGR---AD-YQRLEFLGDRVLGLVLASELYTRFPAASEGEMSSRLHV 75
Query: 302 LVNNTIFATLAAR 340
L + A +A R
Sbjct: 76 LASGATCAAIAQR 88
>UniRef50_A3CSF0 Cluster: Ribonuclease III; n=1; Methanoculleus
marisnigri JR1|Rep: Ribonuclease III - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 258
Score = 37.5 bits (83), Expect = 0.46
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 140 QAMTHASH--HRNVLTDCYQ---RLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSAL 304
+A+TH S+ H + ++ RLEFLG+ +LD++I HLY + PG + + R +
Sbjct: 59 RALTHRSYANHGEYPAETFEDNERLEFLGNYVLDFVIADHLYGEYDL-PPGEM-NRRLQV 116
Query: 305 VNNTIFATLAARHG 346
NT A + R G
Sbjct: 117 TRNTKLAEIVRRQG 130
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,306,076
Number of Sequences: 1657284
Number of extensions: 12759566
Number of successful extensions: 68860
Number of sequences better than 10.0: 319
Number of HSP's better than 10.0 without gapping: 52799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63869
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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