Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J09
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    87   2e-18
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    37   0.003
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
 Frame = +2

Query: 92   LERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
            +E  + Y F+++ LL  A  H S   +  + + YQ+LEFLGDA+LDY+I ++LY+     
Sbjct: 1086 IEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNA 1145

Query: 269  SPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEH 448
            + G LTD +S  V N   + +      HKY +H S  + + + +Y ++ E    + SE  
Sbjct: 1146 TSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENP 1205

Query: 449  YLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
            +   E        ++ PK + D  E++  AIFLDSG SL
Sbjct: 1206 WFWFE--------IDSPKFISDTLEAMICAIFLDSGFSL 1236


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 170 NVLTDCY-QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHG 346
           N L D + +RLEFLGD+  +   TR ++        G+L+ LR+  V N      A  +G
Sbjct: 164 NELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYG 223

Query: 347 FHK 355
           F K
Sbjct: 224 FDK 226


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 17  PRSPLLRYVEDPEGELEKMVSGYEQLERVLQ 109
           P++P++ Y+ DP  E  K ++ YE+L+++ Q
Sbjct: 267 PKTPVM-YMVDPAYEPHKQIARYEKLQQIFQ 296


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/78 (26%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
 Frame = +2

Query: 629 GPXPXPLFXXPXLG-PSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPP--PXXLSPGXX 799
           G  P PL     +  P      +     PA P    A R        PP  P    P   
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432

Query: 800 XXPXPRIPHGXPXXPPAP 853
               P +P G P  PP P
Sbjct: 433 PSAPPSLPMGAPAAPPLP 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,157
Number of Sequences: 5004
Number of extensions: 41254
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)