Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J09
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 197 8e-51
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p... 54 1e-07
AF160248-1|AAD45518.1| 860|Caenorhabditis elegans ribonuclease ... 54 1e-07
AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily a... 31 1.5
AC024770-8|AAF59486.1| 740|Caenorhabditis elegans Hypothetical ... 30 2.6
Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.5
AC024796-10|AAK29896.1| 623|Caenorhabditis elegans Hypothetical... 29 6.0
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 197 bits (481), Expect = 8e-51
Identities = 103/201 (51%), Positives = 143/201 (71%), Gaps = 13/201 (6%)
Frame = +2
Query: 23 SPLLRYVEDPEGE------LEKMVSGYE--QLERVLQYRFRDRSLLLQAMTHASHHRNVL 178
SPLLR+++ P L + ++ QLE + YRF++R+ L+QA THAS+ N +
Sbjct: 1550 SPLLRFIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRV 1609
Query: 179 TDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
T CYQRLEFLGDA+LDY+ITR+L+ED R +SPG LTDLRSALVNNTIFA+LA + F K+
Sbjct: 1610 TGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKH 1669
Query: 359 FRHMSPGLNEVLKKYVKIQEENGH--SISEEHYLI-HEDEME--QAEDVEVPKALGDLFE 523
F M PGL +++K+VK+ E + + E Y++ E+E++ Q ED+EVPKA+GD+FE
Sbjct: 1670 FIAMCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFE 1729
Query: 524 SVAGAIFLDSGMSLGRRVEVV 586
SVAGAI+LDSG +L +V+
Sbjct: 1730 SVAGAIYLDSGRNLDTTWQVI 1750
>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
protein F26E4.10 protein.
Length = 1086
Score = 54.4 bits (125), Expect = 1e-07
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Frame = +2
Query: 44 EDPEGE-----LEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY-QRLEF 205
EDP+G+ + +S + LE L +F + LL +A T + N LT + QRLE+
Sbjct: 815 EDPQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEW 874
Query: 206 LGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
LGD++L +++ LY H G ++ LR++LV+N A + GF ++
Sbjct: 875 LGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEF 925
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLA 334
+RLE+LGDA+++ +++ HLY H G L R+ALV N ATLA
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLA 738
Score = 35.1 bits (77), Expect = 0.069
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Frame = +2
Query: 95 ERVLQYRFRDRSLLLQAMTHAS----------HHRNVLTDC-YQRLEFLGDAILDYLIT- 238
E V++Y+F DR ++ A+ H+S H +N++T+C Y+R D +
Sbjct: 611 EEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKREKKRVAG 670
Query: 239 -RHLYEDKRCHSPGA--LTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK 409
L+ + S G L + R + + + + + H + H GL +
Sbjct: 671 IMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGL--ATYRTAL 728
Query: 410 IQEENGHSISE----EHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMS 562
+Q N ++++ + L + + E AL + FE+V AI+LD G++
Sbjct: 729 VQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783
>AF160248-1|AAD45518.1| 860|Caenorhabditis elegans ribonuclease
protein.
Length = 860
Score = 54.4 bits (125), Expect = 1e-07
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Frame = +2
Query: 44 EDPEGE-----LEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY-QRLEF 205
EDP+G+ + +S + LE L +F + LL +A T + N LT + QRLE+
Sbjct: 589 EDPQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEW 648
Query: 206 LGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 358
LGD++L +++ LY H G ++ LR++LV+N A + GF ++
Sbjct: 649 LGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEF 699
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLA 334
+RLE+LGDA+++ +++ HLY H G L R+ALV N ATLA
Sbjct: 465 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLA 512
Score = 35.1 bits (77), Expect = 0.069
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Frame = +2
Query: 95 ERVLQYRFRDRSLLLQAMTHAS----------HHRNVLTDC-YQRLEFLGDAILDYLIT- 238
E V++Y+F DR ++ A+ H+S H +N++T+C Y+R D +
Sbjct: 385 EEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKREKKRVAG 444
Query: 239 -RHLYEDKRCHSPGA--LTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK 409
L+ + S G L + R + + + + + H + H GL +
Sbjct: 445 IMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGL--ATYRTAL 502
Query: 410 IQEENGHSISE----EHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMS 562
+Q N ++++ + L + + E AL + FE+V AI+LD G++
Sbjct: 503 VQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 557
>AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily
assigned gene nameprotein 40 protein.
Length = 714
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +2
Query: 65 EKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRH 244
E M E +E++ +Y+ D L+ H+ + +C++ L FLG ++D + RH
Sbjct: 34 ELMAHPREVMEQLEKYKTSD--LIAALGIHSFSKYTISEECHEELAFLGYGMID--VARH 89
Query: 245 LYEDKRCHSPGALTDL 292
+ + + +P +TD+
Sbjct: 90 V-KHQTTAAPSTMTDV 104
>AC024770-8|AAF59486.1| 740|Caenorhabditis elegans Hypothetical
protein Y39H10A.2 protein.
Length = 740
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E +E++ +Y+ D L+ H++ + ++ +C++ L FLG ++D R+
Sbjct: 44 EVMEQLEKYKTSD--LIAALGIHSNANYSISQECHEELSFLGYGVID--AARYARHHSTA 99
Query: 266 HSPGALTD 289
P ++TD
Sbjct: 100 AVPASMTD 107
>Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical
protein F15A4.8a protein.
Length = 755
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -1
Query: 633 GPRXXASSSRPNQAARTTS-TRRPSDMP--ESRNMAPATDSKRSP 508
G ASS+RPN + TT+ T S P ES AP T S +P
Sbjct: 373 GSLLNASSARPNVTSTTTAPTTESSTTPPVESTTTAPVTKSSSTP 417
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = +2
Query: 671 PSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPXPRIPHGXPXXPPA 850
P P Q S+ P P P PP S P P I G P PP
Sbjct: 754 PQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPP 813
Query: 851 P 853
P
Sbjct: 814 P 814
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = +2
Query: 671 PSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPXPRIPHGXPXXPPA 850
P P Q S+ P P P PP S P P I G P PP
Sbjct: 754 PQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPP 813
Query: 851 P 853
P
Sbjct: 814 P 814
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/91 (28%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
P P P P G +P + P P P+ G PPP PG P
Sbjct: 297 PPPPP----PPPGRTPGPPGMPGMPPPPPPSRFGP-PGMGGMPPPPPPGMRYPGGMPPPP 351
Query: 812 P-RIPHGXP--XXPPAPXEXXPXXXGXGXSP 895
P R P P PP P G G P
Sbjct: 352 PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIP 382
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/91 (28%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
P P P P G +P + P P P+ G PPP PG P
Sbjct: 307 PPPPP----PPPGRTPGPPGMPGMPPPPPPSRFGP-PGMGGMPPPPPPGMRYPGGMPPPP 361
Query: 812 P-RIPHGXP--XXPPAPXEXXPXXXGXGXSP 895
P R P P PP P G G P
Sbjct: 362 PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIP 392
>AC024796-10|AAK29896.1| 623|Caenorhabditis elegans Hypothetical
protein Y48G1C.7 protein.
Length = 623
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 380 LNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEV 496
+N+VL++ V ++E N H H L+ ED + +DV V
Sbjct: 567 INDVLEQVV-VEEPNHHDDHPPHELLEEDALVNPDDVIV 604
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,090,364
Number of Sequences: 27780
Number of extensions: 293713
Number of successful extensions: 1431
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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