Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J09
(900 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 25 1.2
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 24 1.6
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 2.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 2.2
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 6.6
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 6.6
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 6.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 8.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 8.8
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.6 bits (51), Expect = 1.2
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +1
Query: 229 PDHASPVR-RQALPLAGSPHRPPLGAGQQHHLRDPGGQTRLSQIFQTHV 372
P SP Q P G P PP Q + G ++ Q+ Q H+
Sbjct: 34 PQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQLLQQHI 82
Score = 22.2 bits (45), Expect = 6.6
Identities = 20/77 (25%), Positives = 24/77 (31%)
Frame = +2
Query: 638 PXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPXPR 817
P P F + P + VSA PA G PP +S P P
Sbjct: 380 PPPNFGVSQVSPVSMSALVSAVRSPA-----GGQLPPSAGAPMPPIPNMSNMSGMPPLPN 434
Query: 818 IPHGXPXXPPAPXEXXP 868
+P P P P P
Sbjct: 435 MPGSMPTMPTMPSMAGP 451
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 24.2 bits (50), Expect = 1.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 639 GXGPRXXASSSRPNQAARTTSTRRP 565
G P+ SS+ + AARTTS+ P
Sbjct: 66 GSSPQHSGSSASTSPAARTTSSMYP 90
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 315 PSSRPWRPDTAFTNISD 365
P +R WRPDT N +D
Sbjct: 83 PYNRVWRPDTILYNNAD 99
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 2.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 270 RREPSPTSARRWSTTPSSRPWRPDTAFTNISD 365
R EP + PS WRPD N +D
Sbjct: 91 RWEPKEYGGVKMLHVPSDHIWRPDIVLYNNAD 122
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 2.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 270 RREPSPTSARRWSTTPSSRPWRPDTAFTNISD 365
R EP + PS WRPD N +D
Sbjct: 91 RWEPKEYGGVKMLHVPSDHIWRPDIVLYNNAD 122
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.2 bits (45), Expect = 6.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 312 TPSSRPWRPDTAFTN 356
T +SR W PD F+N
Sbjct: 110 TDASRVWMPDLFFSN 124
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.2 bits (45), Expect = 6.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 312 TPSSRPWRPDTAFTN 356
T +SR W PD F+N
Sbjct: 110 TDASRVWMPDLFFSN 124
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 22.2 bits (45), Expect = 6.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 121 PEPVLQHALQLLVAGHHLL 65
P PV +HAL +++ G L+
Sbjct: 219 PTPVQKHALPIIMNGRDLM 237
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 8.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 324 RPWRPDTAFTN 356
R WRPDT F N
Sbjct: 116 RIWRPDTYFYN 126
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 8.8
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 315 PSSRPWRPDTAFTNISD 365
PS WRPD N +D
Sbjct: 102 PSDHIWRPDIVLYNNAD 118
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,032
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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