Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J09
(900 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 139 2e-33
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 137 8e-33
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 104 9e-23
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 103 2e-22
At4g15417.1 68417.m02358 ribonuclease III family protein similar... 91 9e-19
At3g20420.1 68416.m02586 ribonuclease III family protein similar... 88 9e-18
At5g45150.1 68418.m05543 ribonuclease III family protein similar... 73 3e-13
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 33 0.26
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 33 0.34
At3g26090.1 68416.m03249 expressed protein 32 0.60
At3g60500.2 68416.m06767 3' exoribonuclease family protein simil... 31 1.4
At3g60500.1 68416.m06766 3' exoribonuclease family protein simil... 31 1.4
At4g36120.1 68417.m05141 expressed protein 30 1.8
At5g39430.1 68418.m04776 hypothetical protein 30 2.4
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 30 2.4
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 29 4.2
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 29 4.2
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 29 4.2
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 29 4.2
At3g24540.1 68416.m03082 protein kinase family protein contains ... 29 5.6
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 5.6
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 5.6
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 5.6
At1g61080.1 68414.m06877 proline-rich family protein 29 5.6
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ... 29 5.6
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ... 29 5.6
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 28 7.3
At3g15400.1 68416.m01954 anther development protein, putative si... 28 7.3
At3g11310.1 68416.m01375 hypothetical protein 28 7.3
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 7.3
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 28 9.7
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 9.7
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 9.7
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 28 9.7
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF
identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 139 bits (337), Expect = 2e-33
Identities = 79/176 (44%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Frame = +2
Query: 32 LRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLG 211
L+ V PE L+ + + LER L+Y F+++ LL++A+THAS + ++ CYQRLEF+G
Sbjct: 1544 LKNVNVPESVLKSI--DFVGLERALKYEFKEKGLLVEAITHASRPSSGVS-CYQRLEFVG 1600
Query: 212 DAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEV 391
DA+LD+LITRHL+ PG LTDLR+A VNN FA +A +H H Y RH S L +
Sbjct: 1601 DAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQ 1660
Query: 392 LKKYVK-IQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
++++VK +Q E+ L D + PK LGD+ ES+AGAIFLDSG
Sbjct: 1661 IREFVKEVQTESSKPGFNSFGL---------GDCKAPKVLGDIVESIAGAIFLDSG 1707
Score = 56.4 bits (130), Expect = 2e-08
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 22/178 (12%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
QL+ ++ Y S +L+A+T AS T CY+R E LGDA L ++++R L+
Sbjct: 1345 QLKNLISYPI-PTSKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQK 1400
Query: 269 SPGALTDLRSALVNNTIFATLAARHGFHKYF--------RHMSPGLNEVLKKYVK----- 409
G LT +R +V+N + A G Y R +PG+ V + K
Sbjct: 1401 HEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSS 1460
Query: 410 IQEENGHSISEEHYLIHED-EMEQAE--------DVEVPKALGDLFESVAGAIFLDSG 556
+E +SEE+ + ED EME E V K L D+ E++ G +++ G
Sbjct: 1461 FFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGG 1518
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 137 bits (332), Expect = 8e-33
Identities = 73/167 (43%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Frame = +2
Query: 59 ELEKMVS-GYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLI 235
+ EK+V+ GY +E +L Y F D+SLL++A+TH S+ + CYQRLEFLGD++LDYLI
Sbjct: 1071 QAEKLVNVGY--MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLI 1128
Query: 236 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQ 415
T+HLY+ C SPG LTD+RSA VNN +A +A + HK+ + S L++ + +
Sbjct: 1129 TKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISR----- 1183
Query: 416 EENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSG 556
++SE + D+ PK LGD+ ES+AGAIF+DSG
Sbjct: 1184 -----TVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSG 1225
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 104 bits (249), Expect = 9e-23
Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Frame = +2
Query: 89 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 268
+LER +Q+ F + LL +A+TH+S + Y+RLEFLGD++LD+LITRHL+
Sbjct: 1151 ELERKIQHEFSAKFLLKEAITHSSLRESY---SYERLEFLGDSVLDFLITRHLFNTYEQT 1207
Query: 269 SPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYV---KIQEENGHSIS 439
PG +TDLRSA VNN FA +A ++ H + + + L + Y+ + +E G SI
Sbjct: 1208 GPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSI- 1266
Query: 440 EEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
++ PKALGD+ ES+AGA+ +D+ + L
Sbjct: 1267 --------------PSIQGPKALGDVVESIAGALLIDTRLDL 1294
Score = 35.1 bits (77), Expect = 0.064
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 191 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRH 367
+RLE LGD++L Y+ + HL+ G L+ R ++++N+ L Y R+
Sbjct: 973 ERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1031
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
CAF protein [Arabidopsis thaliana] GI:6102610; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain, PF03368: Domain of
unknown function, PF00636: RNase3 domain, PF00035:
Double-stranded RNA binding motif
Length = 1676
Score = 103 bits (246), Expect = 2e-22
Identities = 64/160 (40%), Positives = 85/160 (53%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E LE L Y+F + LL+QA H S++R+ CYQRLEFLGDA+LDYL+T + +
Sbjct: 1267 ETLENQLDYKFLHKGLLVQAFIHPSYNRHG-GGCYQRLEFLGDAVLDYLMTSYFFTVFPK 1325
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
PG LTDLRS VNN A +A ++ S L+EV++ Y + +
Sbjct: 1326 LKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASG-- 1383
Query: 446 HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
Q+E PK LGDL ES GA+FLD G +L
Sbjct: 1384 ----------QSEGPRCPKVLGDLVESCLGALFLDCGFNL 1413
Score = 34.7 bits (76), Expect = 0.084
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Frame = +2
Query: 134 LLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNN 313
+L+A+T H + +RLE LGDA L + ++RHL+ G LT RS N
Sbjct: 1094 VLEALTTEKCHERL---SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRS---NV 1147
Query: 314 TIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEME----QA 481
I F + +EV K V HS++ + ++ + E +
Sbjct: 1148 YIRDQALDPTQFFAFGHPCRVTCDEVASKEV-------HSLNRDLGILESNTGEIRCSKG 1200
Query: 482 EDVEVPKALGDLFESVAGAIFLDSG 556
K + D+ E++ GA +DSG
Sbjct: 1201 HHWLYKKTIADVVEALVGAFLVDSG 1225
>At4g15417.1 68417.m02358 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profile PF00636
RNase3 domain
Length = 213
Score = 91.1 bits (216), Expect = 9e-19
Identities = 56/155 (36%), Positives = 87/155 (56%)
Frame = +2
Query: 86 EQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRC 265
E LE++L Y+F+D+SLLL+A T AS+ + ++ Y+ LE LGD+IL+ I +
Sbjct: 30 ESLEKILNYKFKDKSLLLKAFTDASYVDDK-SESYELLELLGDSILNMGIIYDFIKLYPK 88
Query: 266 HSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEE 445
+PG LT LR+ V+ A +A H + Y RH P L E + ++V+ E+
Sbjct: 89 EAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEK-------- 140
Query: 446 HYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLD 550
Y +H + + ++VPK L D+ ES GAIF+D
Sbjct: 141 -YPLHSNGL-----LKVPKVLADIVESTIGAIFMD 169
>At3g20420.1 68416.m02586 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles: PF00636
RNase3 domain, PF00035 Double-stranded RNA binding motif
Length = 391
Score = 87.8 bits (208), Expect = 9e-18
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Frame = +2
Query: 50 PEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTD--CYQRLEFLGDAIL 223
P + + E +E++L Y+F ++SLL +A+TH S TD Y+RLEF+GD+ +
Sbjct: 49 PSVPVSSEMESMEAVEKILNYKFSNKSLLKEAITHTS-----CTDFPSYERLEFIGDSAI 103
Query: 224 DYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKY 403
I+ +LY P L+ LR+A V+ A ++ HG + + R +P L+E +K++
Sbjct: 104 GLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEF 163
Query: 404 VKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGR 571
++ +E L + V+ PK L DLFES+AGA+++D L R
Sbjct: 164 -------SEAVGKEDDL----SVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQR 208
>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles PF00035:
Double-stranded RNA binding motif, PF00636 RNase3 domain
Length = 957
Score = 72.9 bits (171), Expect = 3e-13
Identities = 49/173 (28%), Positives = 85/173 (49%)
Frame = +2
Query: 74 VSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYE 253
++ E +E++L Y F +++LL +A+T S + RLEF GD+IL+ T ++
Sbjct: 1 MNSVEAVEKILNYSFVNKTLLKEAITQKS-------PLFDRLEFFGDSILEVAFTNYICH 53
Query: 254 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHS 433
L DLR+A V+N FA +A H H + +P L + +K + + +
Sbjct: 54 TYPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAE-------A 106
Query: 434 ISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVVRA 592
+ +E +D + V+ PK L D ES+A +F+D + R E+ R+
Sbjct: 107 VRKE-----DDPVPYGGLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRS 154
Score = 59.3 bits (137), Expect = 3e-09
Identities = 44/174 (25%), Positives = 86/174 (49%)
Frame = +2
Query: 68 KMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHL 247
+M S E +E++L Y F +++LL + +TH + + +Q L F+G++ L T+HL
Sbjct: 410 EMDSSVEAVEKILNYSFVNKTLLKELLTHNN------SPLFQGLMFVGESALSLAFTKHL 463
Query: 248 YEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENG 427
Y P L+ LR A + +A +A + G ++ F P ++ ++++ +
Sbjct: 464 YLTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGK-- 521
Query: 428 HSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGRRVEVVR 589
++ Y + V+ PK L +L VAGA+++D ++ R +E+ R
Sbjct: 522 ---EDDPYRV----------VKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFR 562
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/79 (29%), Positives = 26/79 (32%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
P P P++ P P P V + P P P PPP SP P
Sbjct: 443 PPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPP-------------PPPPVYSPPPPSPPP 489
Query: 812 PRIPHGXPXXPPAPXEXXP 868
P P P PP P P
Sbjct: 490 PPPPVYSPPPPPPPPPPPP 508
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/74 (25%), Positives = 25/74 (33%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
P P P++ P P P +P P P + PPP P P
Sbjct: 458 PPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPP----PPPVYSPPPPPPPPPPPPVYSPP 513
Query: 812 PRIPHGXPXXPPAP 853
P + P PP+P
Sbjct: 514 PPPVYSSPPPPPSP 527
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 32.7 bits (71), Expect = 0.34
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +2
Query: 749 CXWXLXPPPXXLSPGXXXXPXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
C PPP SP P P +P PP P + P SP
Sbjct: 38 CPTICSPPPSKPSPSMSPPPSPSLPLSSSPPPPPPHKHSPPPLSQSLSP 86
>At3g26090.1 68416.m03249 expressed protein
Length = 459
Score = 31.9 bits (69), Expect = 0.60
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +2
Query: 11 KLPRSPLLRYVEDPEGELEKMVSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY 190
K+P +R + +EK + ++E L ++ R L Q +TH +N L +
Sbjct: 333 KIPEDDSIRRIYMARHIMEKFIVAGAEMELNLSHKTRQEILTTQDLTHTDLFKNALNEVM 392
Query: 191 QRLEFLGDAILDYLITRHLY---EDKRCH 268
Q ++ + + DY + + E++ CH
Sbjct: 393 QLIKM--NLVRDYWSSIYFIKFKEEESCH 419
>At3g60500.2 68416.m06767 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 268 LAGSPHRPPLGAGQQHHLRDPGGQTRLSQIFQTHVSRLERGAEEIREDTRGERTLYK 438
LA S P A ++ H R Q R ++I + HV RL+ EE+R E +K
Sbjct: 295 LAKSEVSGPTVAVKEEH-RKSSDQERAAEISREHVERLKLSTEEVRSSKEEEAANFK 350
>At3g60500.1 68416.m06766 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 268 LAGSPHRPPLGAGQQHHLRDPGGQTRLSQIFQTHVSRLERGAEEIREDTRGERTLYK 438
LA S P A ++ H R Q R ++I + HV RL+ EE+R E +K
Sbjct: 295 LAKSEVSGPTVAVKEEH-RKSSDQERAAEISREHVERLKLSTEEVRSSKEEEAANFK 350
>At4g36120.1 68417.m05141 expressed protein
Length = 981
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 304 GQQHHLRDPGGQTRLSQIFQTHVSRLERGAEEIREDTRGERTLYKRRAL 450
G H DP Q +SQ H+++ E + E+ + E RR L
Sbjct: 316 GLGHEFTDPRAQRNMSQNHNAHIAKAEISTDHKLEECKRENVYLTRRTL 364
>At5g39430.1 68418.m04776 hypothetical protein
Length = 511
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 319 LRDPGGQTRLSQIFQTHVSRLERGAEEIREDTRGERTLYKRRA 447
L P Q R S ++Q R EE+ E +R LY+ +A
Sbjct: 189 LNSPTSQNRKSAVYQVSFKRRSCDGEEVTEHRSSKRLLYRPKA 231
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = -2
Query: 899 GXGKXPXPXXXGFXXXGXXXXXXPRG-GFGXXGXXXGPGXXFXGAGTTSXXXTGER 735
G G P GF G P G GFG G GPG G G G R
Sbjct: 5 GCGGGPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPR 60
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/79 (25%), Positives = 24/79 (30%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
P P P P P+P + P P P A P P P P
Sbjct: 33 PAPAPTPPKPKPTPAPTPPKPKPKPAPTPPKPKPA-PAPTPPKPKPAPAPTPPKPKPKPA 91
Query: 812 PRIPHGXPXXPPAPXEXXP 868
P P+ P P P + P
Sbjct: 92 PTPPNPKPTPAPTPPKPKP 110
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/74 (27%), Positives = 23/74 (31%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
P P P P P+P + + P P P A P P P P
Sbjct: 46 PAPTPPKPKPKPAPTPPKPKPAPAPTPPKPKPAPAPTPPKP---KPKPAPTPPNPKPTPA 102
Query: 812 PRIPHGXPXXPPAP 853
P P P PAP
Sbjct: 103 PTPPKPKPAPAPAP 116
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 280 PHRPPLGAGQQHHLRDPGGQTRLSQIFQTHVSRLERGAEEIREDTRGERTLYKRR 444
PH PP G ++ +RD G + L + ++ LE G + R G+ L+ R+
Sbjct: 408 PHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQ 462
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/77 (27%), Positives = 26/77 (33%)
Frame = +2
Query: 638 PXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPXPR 817
P P + P P P T + P P P + PPP ++P P P
Sbjct: 106 PPPPYVKP---PPPPTVKPPPPPTPYTPPPPTPYTPPPPTVKPPPPPVVTP-PPPTPTPE 161
Query: 818 IPHGXPXXPPAPXEXXP 868
P P PP P P
Sbjct: 162 AP--CPPPPPTPYPPPP 176
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/86 (24%), Positives = 29/86 (33%)
Frame = +2
Query: 611 LEAFXRGPXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSP 790
+ A+ P P P P + SP V ++P P + PPP S
Sbjct: 453 VRAYPPPPPPSPSPPPPYVYSSPPPPYVYSSPPPPPYVYSSPPPPPYVYSSPPPPYVYS- 511
Query: 791 GXXXXPXPRIPHGXPXXPPAPXEXXP 868
P P + P PP+P P
Sbjct: 512 ---SPPPPYVYSSPPPPPPSPPPPCP 534
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Frame = +2
Query: 638 PXPLFXXPXLGP-SPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPXP 814
P PLF P P +P +S P P P+ R PPP SP P
Sbjct: 50 PEPLFSEPPPPPKAPVNVSLSPPPPPRSPSTSTPPRLG---NRNPPPPA-SPSGQEPTTP 105
Query: 815 RIPHGXPXXPPAP 853
+ G PP+P
Sbjct: 106 TMTPGFSLSPPSP 118
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 440 EEHYLIHEDEMEQAEDVEVPKALGDLFESVA-GAIFLDS 553
E+H L++E+ E E++EV + G+ + + GA LDS
Sbjct: 138 EDHELVNEEGEELEEEIEVEEEAGEFADEIGDGAEDLDS 176
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Frame = +2
Query: 638 PXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWX-LXPPPXXLSPGXXXXPXP 814
P P+ P + SP V+ P PA P + PPP P P P
Sbjct: 45 PPPVSAPPPVTTSPPP--VTTAPPPANPPPPVSSPPPASPPPATPPPVASPPPPVASPPP 102
Query: 815 RIPHGXPXXPPAPXEXXP 868
P PPAP P
Sbjct: 103 ATPPPVATPPPAPLASPP 120
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Frame = +2
Query: 638 PXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWX-LXPPPXXLSPGXXXXPXP 814
P P+ P + SP V+ P PA P + PPP P P P
Sbjct: 45 PPPVSAPPPVTTSPPP--VTTAPPPANPPPPVSSPPPASPPPATPPPVASPPPPVASPPP 102
Query: 815 RIPHGXPXXPPAPXEXXP 868
P PPAP P
Sbjct: 103 ATPPPVATPPPAPLASPP 120
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/91 (27%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Frame = +2
Query: 632 PXPXPL---FXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXX 802
P P PL P P P V+ P P P A PPP PG
Sbjct: 511 PPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAA----------PPPPPPPPGTQA 560
Query: 803 XPXPRIPHGXPXXPPAPXEXXPXXXGXGXSP 895
P P P P+P G G P
Sbjct: 561 APPPPPPPPMQNRAPSPPPMPMGNSGSGGPP 591
>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 392 LKKYVKIQEENGHSISEEHYLIHEDEMEQAEDV 490
L K V + E GH + EEH + ED++E+ E++
Sbjct: 192 LPKPVLVDEREGHVV-EEHEMKDEDDVEEGENL 223
>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 392 LKKYVKIQEENGHSISEEHYLIHEDEMEQAEDV 490
L K V + E GH + EEH + ED++E+ E++
Sbjct: 192 LPKPVLVDEREGHVV-EEHEMKDEDDVEEGENL 223
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
P P P P P P V +P P P+ + PPP P P
Sbjct: 389 PPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPP-------PYVYPPPP----PPYVYPPP 437
Query: 812 PRIPHGXPXXPPAP 853
P P+ P PP+P
Sbjct: 438 PSPPYVYPPPPPSP 451
>At3g15400.1 68416.m01954 anther development protein, putative
similar to anther development protein ATA20 GB:AAC50042
GI:2708813 from [Arabidopsis thaliana]
Length = 416
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 280 PHRPPLGAGQQHHLRDPGGQT 342
PH PP +GQ H+ D G T
Sbjct: 384 PHCPPFTSGQDKHMSDKGAMT 404
>At3g11310.1 68416.m01375 hypothetical protein
Length = 539
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 42 WKTLRVSWRRWCPATSS 92
W R +WRRWC A S
Sbjct: 236 WNITRDAWRRWCQAVGS 252
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = +2
Query: 632 PXPXPLFXXPXLGPSPXTXQVSANPXPAXPAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
P P P P P+ VS P P P A PPP SP
Sbjct: 96 PPPQPPQSPPASAPTVSPPPVSPPPAPTSPPPTPASPPPA--PASPPPAPASPPPAPVSP 153
Query: 812 PRIPHGXP-XXPPAP 853
P + P PPAP
Sbjct: 154 PPVQAPSPISLPPAP 168
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Frame = +2
Query: 644 PLFXXPXLGPSPXTXQVSANPXPAX----PAXXGAFRXXCXWXLXPPPXXLSPGXXXXPX 811
PL P PSP + P PA P F PPP P P
Sbjct: 38 PLSPPPSPPPSPSSPPRLPPPFPALFPPEPPLPPRFELPPP-LFPPPPLPRLPPPLLPPP 96
Query: 812 PRIPHGXPXXPPAPXEXXP 868
P P PP P E P
Sbjct: 97 EEPPREPPPPPPPPEEPPP 115
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 27.9 bits (59), Expect = 9.7
Identities = 25/92 (27%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Frame = +2
Query: 638 PXPLFXXPXLGPSPXTX------QVSANPXPAXPAXXGA----FRXXCXWXLXPPPXXLS 787
P P + P GP P T Q A P P G + P P
Sbjct: 6 PPPQYLRPPSGPPPPTDPYHQYYQHQARPPVPPPTQPGGPPAWYSNQFHHPHSPSPPPPP 65
Query: 788 PGXXXXPXPRIPHGXPXXPPA-PXEXXPXXXG 880
P P P P G P PA P P G
Sbjct: 66 PPQWGPPSPHYPQGQPYSSPAYPPHQPPFNAG 97
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.9 bits (59), Expect = 9.7
Identities = 25/92 (27%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Frame = +2
Query: 638 PXPLFXXPXLGPSPXTX------QVSANPXPAXPAXXGA----FRXXCXWXLXPPPXXLS 787
P P + P GP P T Q A P P G + P P
Sbjct: 6 PPPQYLRPPSGPPPPTDPYHQYYQHQARPPVPPPTQPGGPPAWYSNQFHHPHSPSPPPPP 65
Query: 788 PGXXXXPXPRIPHGXPXXPPA-PXEXXPXXXG 880
P P P P G P PA P P G
Sbjct: 66 PPQWGPPSPHYPQGQPYSSPAYPPHQPPFNAG 97
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 413 QEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSL 565
+ + GH S++ ++HED+ + + + + D +SV I L++ SL
Sbjct: 346 ESDGGHKDSQDEVVVHEDKCSPSSNGSIVTNVSDPEQSVRRLIDLNNPPSL 396
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,222
Number of Sequences: 28952
Number of extensions: 270825
Number of successful extensions: 1304
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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