Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J08
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   2.4  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   7.4  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   7.4  
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    25   9.8  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 331 PTGWLVPNMVPLAIQHGKHKIYWNS 257
           PT  L+PN VP  +    H +YW+S
Sbjct: 691 PTVELLPNNVPYNLGDLNHPVYWSS 715


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 338 MLVRSIPSILDHKKYLIIARYRSPLTVSAAPCASSKK*GPMIPLDK 475
           + + S  + LD+++YL IA+ +S +   +    SSK   P  P D+
Sbjct: 151 LTMNSRDAALDYEEYLAIAKEKSLIPRRSRGRTSSKSLSPPAPQDE 196


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 237 IRDDEAFEFQ*ILCFPCCMARGTILGTNHP 326
           IR  E  +F   LC PC    G  LGT+HP
Sbjct: 21  IRCVECVDFD--LCIPC-FTSGASLGTHHP 47


>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 308 IRNQPSCWNHMLVRSIPSILDHKKYL----IIARYRSPLT 415
           ++N+PS +++  + + PS+L   KY     ++A Y  P T
Sbjct: 43  VQNEPSKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPKT 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,347
Number of Sequences: 5004
Number of extensions: 63743
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)