Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J08
(823 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033) 50 2e-06
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 44 1e-04
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 44 1e-04
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 33 0.21
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6) 33 0.21
SB_58105| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_37227| Best HMM Match : Sof1 (HMM E-Value=2.1) 28 8.0
>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
Length = 999
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Frame = -2
Query: 495 SAWNATRLSSGIIGPYFFEDAQGAALTVNGDRYRAMIRYFLWS---RIDGMDLTSMWFQQ 325
+AW ++ GIIGP++FED G + TVN +RY A++ + W+ R G+ S WFQQ
Sbjct: 606 TAWAMSK--HGIIGPFWFEDDDGRSQTVNKERYIAVLNKY-WASLGRRRGVVRASQWFQQ 662
Query: 324 DG 319
DG
Sbjct: 663 DG 664
Score = 41.5 bits (93), Expect = 8e-04
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Frame = -3
Query: 305 GAPCHTARET*NLLE--FEGFVISDGGDINWPLRSCDSTPLNYFLYGNVLRLGYVKALVY 132
GA HTA ET L FEG +IS D+ W S D P +++L+ G++K VY
Sbjct: 664 GATPHTANETIAWLRQRFEGRLISRRCDVEWAPHSPDLNPPDFYLW------GFLKDNVY 717
Query: 131 TA-PQS--TLKANIARALREI*LHLCEDIIQNY 42
PQ+ LK I +R I C +IQN+
Sbjct: 718 QGNPQTIEELKTAITAKIRAIPKEECIKVIQNF 750
>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 153
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = -2
Query: 465 GIIGPYFFEDAQGAALTVNGDRYRAMIRYFLWS--RIDGMDLTSMWFQQDG 319
GII P++FED G + TV +RY A++ + S R G+ S WFQQDG
Sbjct: 5 GIIRPFWFEDDNGRSQTVKEERYIAVLNKYCASLGRRRGVVRASQWFQQDG 55
Score = 33.1 bits (72), Expect = 0.28
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = -3
Query: 305 GAPCHTARET*NLLE--FEGFVISDGGDINWPLRSCDSTPLNYFLYGNVLRLGYVKALVY 132
GA HTA T L FE +IS D+ W S D P +++L+ G++K VY
Sbjct: 55 GATPHTANGTIAWLRQRFEEKLISRRCDVEWVPHSPDLNPPDFYLW------GFLKDNVY 108
Query: 131 TA-PQS--TLKANIARALREI*LHLCEDIIQNY 42
PQ+ LK I + I C +IQN+
Sbjct: 109 QGNPQTIEKLKTAITAKINAIPKEECIKVIQNF 141
>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = -2
Query: 465 GIIGPYFFEDAQGAALTVNGDRYRAMIRYFLWS--RIDGMDLTSMWFQQDG 319
GII P++FED G + TV +RY A++ + S R G+ S WFQQDG
Sbjct: 5 GIIRPFWFEDDNGRSQTVKEERYIAVLNKYCASLGRRRGVVRASQWFQQDG 55
Score = 33.5 bits (73), Expect = 0.21
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = -3
Query: 305 GAPCHTARET*NLLE--FEGFVISDGGDINWPLRSCDSTPLNYFLYGNVLRLGYVKALVY 132
GA HTA T L FE +IS D+ W S D P +++L+ G++K VY
Sbjct: 55 GATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLW------GFLKDNVY 108
Query: 131 TA-PQS--TLKANIARALREI*LHLCEDIIQNY 42
PQ+ LK I + I C +IQN+
Sbjct: 109 QGNPQTIEKLKTAITAKINAIPKEECIKVIQNF 141
>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = -2
Query: 465 GIIGPYFFEDAQGAALTVNGDRYRAMIRYFLWS--RIDGMDLTSMWFQQDG 319
GII P++FED G + TV +RY A++ + S R G+ S WFQQDG
Sbjct: 5 GIIRPFWFEDDDGRSQTVKKERYIAVLNKYCASLGRRRGVVRASQWFQQDG 55
Score = 33.5 bits (73), Expect = 0.21
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = -3
Query: 305 GAPCHTARET*NLLE--FEGFVISDGGDINWPLRSCDSTPLNYFLYGNVLRLGYVKALVY 132
GA HTA T L FE +IS D+ W S D P +++L+ G++K VY
Sbjct: 55 GATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLW------GFLKDNVY 108
Query: 131 TA-PQS--TLKANIARALREI*LHLCEDIIQNY 42
PQ+ LK I + I C +IQN+
Sbjct: 109 QGNPQTIEKLKTAITAKINAIPKEECIKVIQNF 141
>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 254
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = -2
Query: 465 GIIGPYFFEDAQGAALTVNGDRYRAMIRYFLWS--RIDGMDLTSMWFQQDG 319
GII P++FED G + TV +RY A++ + S R G+ S WFQQDG
Sbjct: 5 GIIRPFWFEDDNGRSQTVKEERYIAVLNKYCASLGRRRGVVRASQWFQQDG 55
Score = 33.9 bits (74), Expect = 0.16
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = -3
Query: 305 GAPCHTARET*NLLE--FEGFVISDGGDINWPLRSCDSTPLNYFLYGNVLRLGYVKALVY 132
GA HTA T L FE +IS D+ W S D P +++L+ G++K VY
Sbjct: 55 GATPHTANGTIAWLRQRFEEKLISRRCDVEWAQHSPDLNPPDFYLW------GFLKDNVY 108
Query: 131 TA-PQS--TLKANIARALREI*LHLCEDIIQNY 42
PQ+ LK I + I C +IQN+
Sbjct: 109 QGNPQTIEKLKTAITAKINAIPKEECIKVIQNF 141
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 33.5 bits (73), Expect = 0.21
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = -3
Query: 305 GAPCHTARET*NLLE--FEGFVISDGGDINWPLRSCDSTPLNYFLYGNVLRLGYVKALVY 132
GA HTA T L FE +IS D+ W S D P +++L+ G++K VY
Sbjct: 279 GATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLW------GFLKDNVY 332
Query: 131 TA-PQS--TLKANIARALREI*LHLCEDIIQNY 42
PQ+ LK I + I C +IQN+
Sbjct: 333 QGNPQTIEKLKTAITAKINAIPKEECIKVIQNF 365
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 429 GAALTVNGDRYRAMIRYFLWS--RIDGMDLTSMWFQQDG 319
G + TV +RY A++ + S R G+ S WFQQDG
Sbjct: 241 GRSQTVKEERYIAVLNKYCASLGRRRGVVRASQWFQQDG 279
>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
Length = 267
Score = 33.5 bits (73), Expect = 0.21
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = -3
Query: 305 GAPCHTARET*NLLE--FEGFVISDGGDINWPLRSCDSTPLNYFLYGNVLRLGYVKALVY 132
GA HTA T L FE +IS D+ W S D P +++L+ G++K VY
Sbjct: 3 GATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLW------GFLKDNVY 56
Query: 131 TA-PQS--TLKANIARALREI*LHLCEDIIQNY 42
PQ+ LK I + I C +IQN+
Sbjct: 57 QGNPQTIEKLKTAITAKINAIPKEECIKVIQNF 89
>SB_58105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 44
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 465 GIIGPYFFEDAQGAALTVNGDRYRAMIRYF 376
GII P++FED G + TV +RY A++ +
Sbjct: 5 GIIRPFWFEDDDGRSQTVKKERYIAVLNKY 34
>SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = +1
Query: 196 VESHDLSGQLMSPPSEMTKPSNSNKFYVSRAVWQGAPY*EPTILLEPHACEIHTIYPRPQ 375
+E LSGQ +SP + +T + + + V + P+ + +++ + EI+ +Y P+
Sbjct: 525 IEGRQLSGQNISPVARVTVANQTRQTKVK--ISTNKPFYDEETVIDKNGNEINRLY-NPE 581
Query: 376 KVSYHRPISVAIDSERG 426
+ R + V + RG
Sbjct: 582 SLPSPRAVKVKSEYSRG 598
>SB_37227| Best HMM Match : Sof1 (HMM E-Value=2.1)
Length = 232
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 230 RHHPR*RSLRIPINFMFPVLYGKGHHIRNQPS--CWNHMLVRSIPSILDHKKYLI 388
RH P S++IP N F + + I + + CW RS+ H+KY++
Sbjct: 102 RHSPNMLSMKIPSNHQFVLASAQRRGITDGTAKHCWKGQTARSVE---QHEKYVL 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,526,999
Number of Sequences: 59808
Number of extensions: 465612
Number of successful extensions: 950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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