Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J08
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-5|AAB52668.1|  478|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AF303267-1|AAG50225.1|  478|Caenorhabditis elegans kynureninase ...    33   0.19 
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans AP...    29   4.0  
AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans AP...    29   4.0  
U46673-7|AAC48154.1|  811|Caenorhabditis elegans Beta-catenin/ar...    28   7.0  
AF063646-1|AAC17424.1|  811|Caenorhabditis elegans beta-catenin/...    28   7.0  

>U56965-5|AAB52668.1|  478|Caenorhabditis elegans Hypothetical
           protein C15H9.7 protein.
          Length = 478

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
 Frame = -2

Query: 423 ALTVNGDRYRAMIRYFLWSRIDGMDLTSMWFQQDGWFLIWCPLPYS---TGNI------- 274
           A+T  G R    + + L      + L   W+  D  F  WC   Y     G+I       
Sbjct: 248 AITEAGHRKGCFVGFDLAHAFANVPLHLHWWDVD--FACWCSYKYGCTGAGSIGGLFVHE 305

Query: 273 KFIGIRRLRHLGWWRHQLATEVV 205
           +F+  +R R LGWW H++++  V
Sbjct: 306 RFLNDQRERMLGWWSHKMSSRFV 328


>AF303267-1|AAG50225.1|  478|Caenorhabditis elegans kynureninase
           protein.
          Length = 478

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
 Frame = -2

Query: 423 ALTVNGDRYRAMIRYFLWSRIDGMDLTSMWFQQDGWFLIWCPLPYS---TGNI------- 274
           A+T  G R    + + L      + L   W+  D  F  WC   Y     G+I       
Sbjct: 248 AITEAGHRKGCFVGFDLAHAFANVPLHLHWWDVD--FACWCSYKYGCTGAGSIGGLFVHE 305

Query: 273 KFIGIRRLRHLGWWRHQLATEVV 205
           +F+  +R R LGWW H++++  V
Sbjct: 306 RFLNDQRERMLGWWSHKMSSRFV 328


>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
           protein T22B11.5 protein.
          Length = 1029

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 266 LEFEG-FVISDGGDINWPLRSCDSTPLN-YFLYGNVLRLGYVKALVYTAPQSTLKANIAR 93
           + FEG F      D NW + +C +TP N Y L    + + + K  V  +P+S L+  +AR
Sbjct: 813 IAFEGTFEAQQLHDTNWIVANC-TTPANIYHLLRRQVTMPFRKPAVVFSPKSLLRHPMAR 871

Query: 92  A 90
           +
Sbjct: 872 S 872


>AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans APB-1
           protein, isoform c protein.
          Length = 827

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +1

Query: 313 EPTILLEPHACEIHTIYPRPQKVSYHRPISVAIDSERGPLRVFEEIRA 456
           E T LLEP   E    +       YH+P S  ID  + PLR    I A
Sbjct: 547 EETDLLEPSLLEQLVCHIGTLASVYHKPPSAFIDPAKAPLRQINPIPA 594


>AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans APB-1
           protein, isoform a protein.
          Length = 955

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +1

Query: 313 EPTILLEPHACEIHTIYPRPQKVSYHRPISVAIDSERGPLRVFEEIRA 456
           E T LLEP   E    +       YH+P S  ID  + PLR    I A
Sbjct: 547 EETDLLEPSLLEQLVCHIGTLASVYHKPPSAFIDPAKAPLRQINPIPA 594


>U46673-7|AAC48154.1|  811|Caenorhabditis elegans
           Beta-catenin/armadillo relatedprotein 1 protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 241 EMTKPSNSNKFYVSRAVWQGAPY*EPTILLEPHACEIHTIYPR---PQKVSYHR--PISV 405
           + +KP NS  ++   A++       P   L+PHA    + YPR   PQ  SY R  P+  
Sbjct: 731 DSSKPYNSPMYHSPPAMYPEYSIGPPETYLDPHATA--SCYPRPTPPQYNSYDRSPPVYN 788

Query: 406 AIDSERGP 429
            + S  GP
Sbjct: 789 DLPSNPGP 796


>AF063646-1|AAC17424.1|  811|Caenorhabditis elegans
           beta-catenin/armadillo homologBAR-1 protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 241 EMTKPSNSNKFYVSRAVWQGAPY*EPTILLEPHACEIHTIYPR---PQKVSYHR--PISV 405
           + +KP NS  ++   A++       P   L+PHA    + YPR   PQ  SY R  P+  
Sbjct: 731 DSSKPYNSPMYHSPPAMYPEYSIGPPETYLDPHATA--SCYPRPTPPQYNSYDRSPPVYN 788

Query: 406 AIDSERGP 429
            + S  GP
Sbjct: 789 DLPSNPGP 796


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,379,249
Number of Sequences: 27780
Number of extensions: 354183
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)