Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J08
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 215 LRSCDSTPLNYFLYGNVLRLGYVKALVYTAPQSTLKANIARALREI*LHLCEDI 54
           L++ D+ P   FL    L LGY  +L+     +TL  +  +  REI    C ++
Sbjct: 398 LKNPDAIPA--FLSSLFLWLGYCNSLLNPIIYATLNRDFRKPFREILYFRCSNL 449


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 238 SEMTKPSNSNKFYV 279
           S+MT+PS+S K YV
Sbjct: 194 SQMTEPSSSTKSYV 207


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 260 IPINFMFPVLYG 295
           +PIN  F VLYG
Sbjct: 697 VPINVQFSVLYG 708



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 486 NATRLSSGIIGPYFFEDAQGAALTVNGD 403
           N   + SGI G Y    +  A   +NG+
Sbjct: 846 NRPIVQSGIFGKYMVSPSNDALFVLNGE 873


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 226 MSPPSEMTKPSNSNKFYVSRAVWQGAPY*EPTILLE-PHACEIHTIYPR 369
           M  PS+  +P NS+ F +   V Q     E T+ ++    CE+H + PR
Sbjct: 353 MDLPSDQVEPDNSSNFAMKPLVRQP----EDTMSVDRMQHCELH-MQPR 396


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 226 MSPPSEMTKPSNSNKFYVSRAVWQGAPY*EPTILLE-PHACEIHTIYPR 369
           M  PS+  +P NS+ F +   V Q     E T+ ++    CE+H + PR
Sbjct: 353 MDLPSDQVEPDNSSNFAMKPLVRQP----EDTMSVDRMQHCELH-MQPR 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,173
Number of Sequences: 438
Number of extensions: 4736
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)