Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J08
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44700.1 68415.m05563 kelch repeat-containing F-box family pr...    30   2.1  
At4g11750.1 68417.m01874 kelch repeat-containing F-box family pr...    29   2.8  
At3g27180.1 68416.m03399 expressed protein                             29   4.9  
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ...    29   4.9  

>At2g44700.1 68415.m05563 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif;
          Length = 368

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +3

Query: 462 YRWTSV*RSMLKFHD*ICA-HAKFDSYCF-TKMGAMSCQRSSIPNEKPYRLGIRNCFIVS 635
           +RW  + ++ + F   +CA  ++    C+ T+ G  SCQRS +PN++  R+G+  C I +
Sbjct: 213 HRW--ICKANVSFDRKVCALRSREGMTCYDTRDG--SCQRSEMPNDQWSRVGL--CVIDN 266

Query: 636 LLF 644
           +LF
Sbjct: 267 VLF 269


>At4g11750.1 68417.m01874 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 386

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 214 SGQLMSPPSEMTKPSNSNKFYVSRAVWQGAPY*EPTILLEPHACEIHTIYPRPQ 375
           +   ++PPSE+T+ +N +  Y+ R    GA +    + ++   C  HT++  P+
Sbjct: 121 TSNFITPPSELTRITNGSNIYIVRVFTNGA-FSSRFLFMD---CRSHTLHEVPR 170


>At3g27180.1 68416.m03399 expressed protein
          Length = 518

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 352 HTIYPRPQKVSYHRPISVAIDSERGPLRVFEEIRADDTAG 471
           HT+   P+  S+H  I+ AI+  R  ++VF+ +  D+  G
Sbjct: 121 HTVVDIPECKSHHPNINAAIELLREGIKVFDVVPFDEDQG 160


>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 304

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 229 SPPSEMTKPSNSNKFYVSRAVWQGAPY*EPTILLEPHACEIHTI 360
           SPPS + +PS ++K+  S + W       P+ ++E  +C+++ I
Sbjct: 149 SPPSFVVEPSKNSKYIPSSSPWSC-----PSTVVEQKSCDLYEI 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,673
Number of Sequences: 28952
Number of extensions: 333480
Number of successful extensions: 757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)