Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J06
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.6  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    27   2.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.4  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.5  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   7.9  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    26   7.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   7.9  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 378 HSPSWPSEVWHERSSFVETPGTRVDGALSAT 286
           HS ++P+E+W  R    E P  + D  L+ T
Sbjct: 45  HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 643 GLSELGLAVHVARGPEGNAVRVPPAAALVHWQGLRP---GRDGI 521
           G+S+L   +HV R P  NA  +P     V ++G+ P   G DG+
Sbjct: 147 GMSDLKWELHVIRDPTPNAFVLPGGKVFV-FEGILPMCKGEDGL 189


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 357 PTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTST 485
           P     + +T TC+ RP   +S    TS++ ES  +    TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 498 LPTRDRQQIPSRPGRRP 548
           LP+R    +PSRPG RP
Sbjct: 114 LPSRGTPSLPSRPGSRP 130


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 297 GLHRPWCL 320
           GLHRPWCL
Sbjct: 685 GLHRPWCL 692


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 409  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 293
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 439 DVCSVSDNGVIGRIAQVIVDALPFLAV 359
           ++  +  NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 409  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 293
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,825
Number of Sequences: 5004
Number of extensions: 57922
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)