Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J06
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0498 + 3734498-3734976,3736176-3736800 32 0.68
06_01_0152 + 1136202-1136316,1136376-1137583 31 1.2
12_01_0466 + 3649500-3649635,3649925-3650520 30 2.7
01_01_0839 - 6540971-6541978,6542076-6542240,6542330-6542419,654... 30 2.7
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002... 29 4.8
03_02_0915 + 12360079-12360095,12360225-12361353 29 4.8
01_06_1160 - 34996840-34996979,34997316-34997478,34997970-349983... 29 4.8
07_03_0849 + 21997758-21998423 28 8.4
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 28 8.4
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 28 8.4
01_06_0725 + 31508156-31508277,31508950-31509118,31509311-315094... 28 8.4
>07_01_0498 + 3734498-3734976,3736176-3736800
Length = 367
Score = 31.9 bits (69), Expect = 0.68
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 439 DVCSVSDNGVIGRIAQVIVDALPFLAVGGLARKV 338
D +D+GV+ IA +VD FLA GG+ R V
Sbjct: 26 DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59
>06_01_0152 + 1136202-1136316,1136376-1137583
Length = 440
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +2
Query: 521 DPITPRPETLPMNQ--GCGWRNPDGVAFRTTGDVDGETKFGESPGMVAILKVEPVDDNEP 694
D +T P T+ MN GC + T+G + T +P ++ L + + E
Sbjct: 245 DALTLNPSTVVMNFRFGCSHAVRGNFSASTSGTMFARTPLVRNPSIIPTLYLVRLRGIEV 304
Query: 695 EGQKLN---VYVGGGSLIHPNVVLT 760
G++LN V GG+++ +V++T
Sbjct: 305 GGRRLNVPPVVFAGGAVMDSSVIIT 329
>12_01_0466 + 3649500-3649635,3649925-3650520
Length = 243
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -3
Query: 784 GGGNVVXGREHHVRMD-QRASPYVNVQLLSFGLVVIDWFNLEDGDHSRGLSELGLAVHVA 608
G G G + H+R + +R P L GL + W + S+GL ELGL +H+
Sbjct: 143 GTGLFELGLQLHLRAEPKRGRP--GTGLFELGLQLHLWAEPKGDRPSKGLFELGLQLHLW 200
Query: 607 RGPEGNAVRVPPA 569
P+ A ++ A
Sbjct: 201 AEPKREAKQIEAA 213
>01_01_0839 -
6540971-6541978,6542076-6542240,6542330-6542419,
6542536-6542736,6542886-6543098,6543216-6543461
Length = 640
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -3
Query: 703 LSFGLVVIDWFNLEDGDHSRGLSELGLAVHVARGPEGNAVRVPPAAALVHWQGLRPGRDG 524
++F + ++ W LE G ELG A+ R V+ PA +++ + D
Sbjct: 102 MAFTVTMMAWSVLEYGKQMAAAGELGHAMDAVRWGADYFVKAHPAPNVLYGEVGDGDSDH 161
Query: 523 ICWR 512
+CW+
Sbjct: 162 VCWQ 165
>07_03_1153 +
24398122-24398747,24399326-24399542,24399741-24400220,
24400801-24401007,24401112-24401249,24401317-24401538
Length = 629
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 497 APDQRPPTD--PITPRPETLPMNQGCGWRNPDGVA 595
A D P TD P+ P+P T G WRNP A
Sbjct: 43 AADAAPATDAAPLPPKPSTGSPFYGENWRNPAAAA 77
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 512 PPTDPITPRPETLPMNQGCGWRNPDGVAFRTTGDVDGETK 631
PP + I PM+QG G + D A T +VD E K
Sbjct: 42 PPAETIVELTTKKPMSQGGGGSSSDSGATSTGAEVDDEEK 81
>01_06_1160 -
34996840-34996979,34997316-34997478,34997970-34998388,
34998413-34998620
Length = 309
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -3
Query: 670 NLEDGDHSRGLSELGLAVHVARGPEGNAVRVPPAAALVHWQGLRPGRDGICWRSLVGSQ 494
+L G H RG+ G + H + G + +PP A+ GLR R C R ++
Sbjct: 79 HLWGGAHGRGVGGSG-SHHRSASQGGGSADLPPVRAVSRTLGLRSARPAPCGRGATAAR 136
>07_03_0849 + 21997758-21998423
Length = 221
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +3
Query: 264 CSRSRSLVSLIGLHRPWCLASLRTMTFRARPPTAKKGSASTITC 395
CSRSRSL SL P A+ R R R P G A+ I C
Sbjct: 106 CSRSRSLSSLSDALSP--PAARRAPERRGRTPRPAAGVAAVIVC 147
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 657 ATIPGDSPNLVSPSTSPVVRKATPSGFRQPQP 562
A++PG +VS +TSPV R+A+P P P
Sbjct: 884 ASVPGS--RIVSRATSPVSRRASPPRSTTPTP 913
>04_04_1636 +
34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 790 FLGGGNVVXGREHHVRMDQRASPYVNVQLLSFGLV-VIDWFNLEDGD 653
FLGGG VV GR +R ++ AS Y V+ + + V V+ +L D D
Sbjct: 246 FLGGGQVVGGRV--IRAEKHASTYDLVERMQYLFVRVVKARDLPDMD 290
>01_06_0725 +
31508156-31508277,31508950-31509118,31509311-31509406,
31510037-31510097,31510387-31510451,31511104-31511178,
31511276-31511351,31512140-31512303,31512398-31512421
Length = 283
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 508 ETANRSHHAQAGDPA-NEPGLRLAEP*RRCLP 600
E RSHH D N+PG+R + RRC P
Sbjct: 53 EEDTRSHHEALLDRTKNKPGIRAVDVRRRCCP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,782,391
Number of Sequences: 37544
Number of extensions: 489259
Number of successful extensions: 1655
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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