Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J06
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)                     34   0.13 
SB_10198| Best HMM Match : MBT (HMM E-Value=0)                         31   0.92 
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)                     31   1.6  
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               31   1.6  
SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         30   2.8  
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            30   2.8  
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              30   2.8  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)                   29   4.9  
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           28   8.5  
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)                      28   8.5  

>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 454

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 30/96 (31%), Positives = 40/96 (41%)
 Frame = +2

Query: 488 CCLAPDQRPPTDPITPRPETLPMNQGCGWRNPDGVAFRTTGDVDGETKFGESPGMVAILK 667
           C L P    PT P +P    +P    CG R P   A R  G  D     GE P    ++ 
Sbjct: 176 CHLLPTSAKPTTPTSPPVPPVPSVPNCGVRPP---ASRIVGGNDA--MHGEWPWQAMLMF 230

Query: 668 VEPVDDNEPEGQKLNVYVGGGSLIHPNVVLTAXHYV 775
             P+      G K      GG+L+H + V+TA H +
Sbjct: 231 QTPL------GYK---QFCGGALVHEDWVVTASHCI 257


>SB_10198| Best HMM Match : MBT (HMM E-Value=0)
          Length = 753

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
 Frame = +2

Query: 200 TPGIWSRSLIRSSHQRSPRTQLQPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDG----Q 367
           TP   SRS +  SH+ SP   L     P V     +   P  S N   S  ++ G    +
Sbjct: 447 TPSPTSRSPLSDSHKNSPVNTLLKTEAPEVPTSTAAVSTPSPSPNVGQSANSTSGPSRVK 506

Query: 368 EGECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYID 484
             + ++    ++  N   TDG   + ++  +  C  Y+D
Sbjct: 507 VADTIDLTDDHSGENEAETDGKICLYVK-STCSCGPYLD 544


>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 968

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 725 GGSLIHPNVVLTAXHYVAAAK--ELKIXAG 808
           GGSLIHP  VLTA H V++ +  +L I  G
Sbjct: 691 GGSLIHPQWVLTATHCVSSRRPTDLNIRLG 720


>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +2

Query: 428 GTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLP-MNQGC 568
           G N   +     P   Y+ V    P  +PP  P TP+P   P +  GC
Sbjct: 195 GMNPSQLAQSVVPAPQYVHVPPATPTPKPPPTPKTPKPGAAPKIKNGC 242


>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
 Frame = +2

Query: 374 ECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDV--CCLAPDQRPPTDPITPRPET 547
           +C++  LCN+    I  D +N         P S  +D   C   PD  PP    TP P  
Sbjct: 694 QCIDNSLCNS----IAGDVSNRQSRDEEKAPLSPDVDKMQCFSPPDSLPPLPKFTPSPTG 749

Query: 548 LPMNQGCGWRNPDGVAFRTTGDVDGETKFGESPGMV--AILKVEPVD 682
            P   G       GV   ++G+V G   +  SP  +  ++L+  P D
Sbjct: 750 YPCRTGVN----QGV--ESSGNVSGPL-YLPSPSQIDPSVLEALPAD 789


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +2

Query: 419 ITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWR 577
           +T G   I  R G G   +++D+C      R   D      E +    GCG R
Sbjct: 60  VTFGHGWISARQGEGHVQTWMDICKTGRRSRSDMDGYLQEREKVTFRHGCGQR 112


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 725 GGSLIHPNVVLTAXHYVAAAKELKI 799
           GGSLIH N VLTA H +++ +  ++
Sbjct: 418 GGSLIHSNWVLTAAHCISSKRPAEV 442


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 691 LVVIDWFNLEDGDHSRGLS 635
           L +IDWFN  D DHS G+S
Sbjct: 555 LRLIDWFNQFDKDHSGGIS 573


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 647 GMVAILKVEPVDDNEPEGQK--LNVYVGGGSLIHPNVVLTAXHYV 775
           G  A L V P+  ++ EG K   +     G+ IHP V+    HY+
Sbjct: 562 GHGAPLSVHPLPPSDTEGAKSAFSTIAKSGTFIHPRVMKPKEHYI 606


>SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)
          Length = 386

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 725 GGSLIHPNVVLTAXHYVA 778
           GGSLIHP  +LTA H V+
Sbjct: 81  GGSLIHPQWILTATHCVS 98


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +2

Query: 725 GGSLIHPNVVLTAXH 769
           GGSLIHP  VLTA H
Sbjct: 287 GGSLIHPEWVLTAAH 301


>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 530

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +2

Query: 725 GGSLIHPNVVLTAXH 769
           GGSLIHP  VLTA H
Sbjct: 247 GGSLIHPEWVLTAAH 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,964,207
Number of Sequences: 59808
Number of extensions: 510049
Number of successful extensions: 1729
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)