Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J06
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 1.4
AF038613-12|AAB92046.3| 328|Caenorhabditis elegans Hypothetical... 30 2.4
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 30 2.4
AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical... 29 3.2
AL023828-22|CAA19467.2| 272|Caenorhabditis elegans Hypothetical... 29 4.3
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 29 5.7
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 29 5.7
AF022973-4|AAC25798.1| 314|Caenorhabditis elegans Temporarily a... 29 5.7
AF016688-6|AAB66074.2| 274|Caenorhabditis elegans Hypothetical ... 29 5.7
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 28 7.5
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 595 GNAVRVPPAAALVHWQGLRPGRDGI 521
G + + PP A+L HW LR G +GI
Sbjct: 304 GQSQKAPPMASLWHWAHLRVGSEGI 328
>AF038613-12|AAB92046.3| 328|Caenorhabditis elegans Hypothetical
protein F42A6.1 protein.
Length = 328
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 197 MFCAHADARKPMNRSLYIFGYYSQNITLTISNSQCS 90
++C +DAR R + S +TLT+S S+C+
Sbjct: 25 LWCILSDARNRNRREFLLVASQSVTVTLTVSTSECA 60
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +3
Query: 348 ARPPTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIP 527
ARP T+ G A+ R P + + + SA + V R T A + + R + P
Sbjct: 355 ARPQTSS-GIAAPGAPRSRIAMPTTSSSSLARRPGSASSSVPRVPTGAASMTSSSRIRPP 413
Query: 528 SRPGRRP 548
SRPG RP
Sbjct: 414 SRPGSRP 420
>AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical
protein Y73F8A.20 protein.
Length = 541
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 595 GNAVRVPPAAALVHWQGLRPGRDGI 521
G + + PP A+L HW L+ G GI
Sbjct: 329 GQSQKAPPMASLWHWASLKVGSSGI 353
>AL023828-22|CAA19467.2| 272|Caenorhabditis elegans Hypothetical
protein Y17G7B.19 protein.
Length = 272
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 395 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRP 514
C + ++I + G ++ + GPCS++ID C PD+ P
Sbjct: 101 CYSKKSSICSTGGTPFEVELSDGPCSNHID-C--NPDELP 137
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +2
Query: 401 AANNTIITDGTNVIDIRVGSGPCSSYIDVCC--LAPDQRPPTDPITPRPETLPMNQGCGW 574
AAN + D TN +D G C C +A P D I P + C W
Sbjct: 15 AANGQFLQDCTNALDGLYALGECEPQFLTCSGGIARIMDCPADLIYNEPLLI-----CDW 69
Query: 575 RNPDGVAFRTTGDVDGETKFGESPG 649
R+ + + +G+ GET GE G
Sbjct: 70 RH-NVIGCEGSGESSGETS-GEGSG 92
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +2
Query: 401 AANNTIITDGTNVIDIRVGSGPCSSYIDVCC--LAPDQRPPTDPITPRPETLPMNQGCGW 574
AAN + D TN +D G C C +A P D I P + C W
Sbjct: 15 AANGQFLQDCTNALDGLYALGECEPQFLTCSGGIARIMDCPADLIYNEPLLI-----CDW 69
Query: 575 RNPDGVAFRTTGDVDGETKFGESPG 649
R+ + + +G+ GET GE G
Sbjct: 70 RH-NVIGCEGSGESSGETS-GEGSG 92
>AF022973-4|AAC25798.1| 314|Caenorhabditis elegans Temporarily
assigned gene nameprotein 57 protein.
Length = 314
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 45 TLSRTRKILKPVTSRRA-LRVRYC*CDVLRIISKDVQASIHRLSRVGVRAEHGHRGSGVD 221
T S+ K K + ++ + + VRY CD R+ +D + +H L+ V + + G D
Sbjct: 86 TKSKLVKTKKQILNKYSDIEVRYAICDFTRVSYEDYKRLLHSLNEVDIGILINNVGMCFD 145
Query: 222 H*SDLH 239
+ LH
Sbjct: 146 NPEVLH 151
>AF016688-6|AAB66074.2| 274|Caenorhabditis elegans Hypothetical
protein F18A12.2 protein.
Length = 274
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 236 SHQRSPRTQLQPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQ 367
+ + PRT L+P T P + +AP++ ++TN ++ G+
Sbjct: 224 NEMKKPRTTLKPSTAPPESSKAPASTGTTLATNPTITGPPGTGK 267
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +2
Query: 725 GGSLIHPNVVLTAXHYVA 778
GGSLI PN VLTA H A
Sbjct: 85 GGSLIDPNFVLTAAHCFA 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,749,622
Number of Sequences: 27780
Number of extensions: 362346
Number of successful extensions: 1202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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