Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J05
         (842 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    30   2.2  
At2g45670.1 68415.m05678 calcineurin B subunit-related contains ...    29   5.1  
At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family...    29   5.1  
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family...    29   5.1  

>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 317 IEPPTSFPAHTTLPSLLNNARRTKP*ISSNLR 222
           + PPTS PA   +P  + + R T+P  +SN R
Sbjct: 295 VSPPTSTPALAAIPKSIGSNRETEPNNNSNPR 326


>At2g45670.1 68415.m05678 calcineurin B subunit-related contains
           Pfam PF00036: EF hand domain and Prosite PS00018:
           EF-hand calcium-binding domain; contains Pfam profile
           PF01553: Acyltransferase; weak similarity to Calcineurin
           B subunit isoform 2 (Protein phosphatase 2B regulatory
           subunit 2) (Protein phosphatase 3 regulatory subunit B
           alpha isoform 2) (Swiss-Prot:Q63811) [Mus musculus]
          Length = 539

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 427 HTIKNINKDKPYSILNLTTDVKNKSLTVNSMHACVRQ 537
           +TI N+NKD+   + +L  D +++ ++ N + +C+R+
Sbjct: 488 NTIPNLNKDEIRGMYHLLDDDQDQRISQNDLLSCLRR 524


>At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 349

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +1

Query: 262 LFRRDGKVV*AGNEVGGSMKVKKHLQSTRGPAVVEIRL*LIGIVILYTIMIVFYTHTIKN 441
           + R  G +   GN +GGS+ ++    S +   +  + L L+  ++   I  VF  +   +
Sbjct: 245 MIRGSGALRVMGNNLGGSVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVIQTVFVPYANDH 304

Query: 442 INKDKPYSILN 474
           + K  P  I++
Sbjct: 305 LEKGFPLPIMH 315


>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 488

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +1

Query: 262 LFRRDGKVV*AGNEVGGSMKVKKHLQSTRGPAVVEIRL*LIGIVILYTIMIVFYTHTIKN 441
           + R  G +   GN +GGS+ ++    S +   +  + L L+  ++   I  VF  +   +
Sbjct: 384 MIRGSGALRVMGNNLGGSVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVIQTVFVPYANDH 443

Query: 442 INKDKPYSILN 474
           + K  P  I++
Sbjct: 444 LEKGFPLPIMH 454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,983,740
Number of Sequences: 28952
Number of extensions: 265406
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)