Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J04
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    28   1.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.9  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    27   3.4  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    27   3.4  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   4.4  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   5.9  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   5.9  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
 Frame = +3

Query: 273 GIFLHWGVYSVPGFGSEWFWSNWKGGNRQCIDFMTKNYPPGFTYQEFAPAFKAEFFDPDK 452
           GI  H+    +P FG     +  +G      DFM +N  P   Y+ F+    A+ F    
Sbjct: 85  GIEGHFRRVGIPCFGPSALAARMEGSKVFSKDFMHRNNIPTAVYKSFSNYDHAKSFLDTC 144

Query: 453 WADLFVK----AGAKYVVLTSKHHEGFTLFPS 536
             D+ +K    A  K V++     E F    S
Sbjct: 145 TFDVVIKADGLAAGKGVIIPKTKKEAFEALES 176


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 237  RPLPEWYDKAKIGIFLHWGVYSVPGFG-SEWFW 332
            R L +++  + IG++L W  YS P  G + W W
Sbjct: 2275 RWLQQFWATSNIGLYLPWAGYSGPYLGRTLWLW 2307


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 386 SSRIHLSGIRTRIQSRVFRSGQMGGSFRKSRSKIRSANK 502
           SS +HLS   T    R+F    +G +  K+R K+ S N+
Sbjct: 47  SSMLHLSKGLTVKDVRIFFHDSIGSTLLKNRKKLNSENE 85


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
 Frame = +3

Query: 537 KRSFSWNSVEVGPKRDIVGDLAKA---VRNTSLKFGVYHSLYEWFXPIYEEDKRKAFKTQ 707
           K + S  S ++  ++D +    K    V    L FG    L     P+ + +K+      
Sbjct: 40  KHALSTTSTKIKKRKDALSKKVKQGIKVNKGKLSFGEDEELENDDLPLKKVEKKMFMGKD 99

Query: 708 TYVDTKLWPDINRSXRLQAPR 770
              DT   PD  R  R  A R
Sbjct: 100 PSADTSFLPDAEREIRENAKR 120


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/69 (23%), Positives = 36/69 (52%)
 Frame = +1

Query: 409 NSHPHSKPSFSIRTNGRIFS*KPEQNT*C*QVNIMRASLCSRQNVRSVGIPSKWAQNAIS 588
           N+  + KP F+I    + FS   E+N    +++ + +SL +  NV+   I +  ++    
Sbjct: 483 NNSLNDKPGFTIEQKDKNFSINNERNNFLQKLSTLDSSLAALVNVQRKLIKALISKERPQ 542

Query: 589 SGTWLRRCE 615
           +GT +++ +
Sbjct: 543 NGTVIKKIQ 551


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 354 RQCIDFMTKNYPPGFTYQEFAPAFKAEFFDPDK 452
           +  I   T +YPP F Y E   ++ A FF  DK
Sbjct: 50  KSSISEWTLDYPPFFAYMECVLSWIAYFFGFDK 82


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 282 LHWGVYSVPGFGSEWFWSNWKGGNRQCIDFMTKNYPPG 395
           LH+ + ++ G+     W N+   ++   D +  NY PG
Sbjct: 181 LHYRIPTLDGYQQHNLWKNFTRWSQYFADNIVSNYRPG 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,536,464
Number of Sequences: 5004
Number of extensions: 76162
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)