Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J04
(849 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.) 268 3e-72
SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 251 5e-67
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 245 3e-65
SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18) 233 1e-61
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.) 198 4e-51
SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11) 189 3e-48
SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16) 172 3e-43
SB_33577| Best HMM Match : Alpha_L_fucos (HMM E-Value=0.043) 48 1e-05
SB_40868| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_33174| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_38237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37) 28 8.3
>SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 268 bits (658), Expect = 3e-72
Identities = 117/210 (55%), Positives = 151/210 (71%), Gaps = 2/210 (0%)
Frame = +3
Query: 219 WNDLDTRPLPEWYDKAKIGIFLHWGVYSVPGFGSEWFWSNWKGGNR-QCIDFMTKNYPPG 395
W LD RPLP WYD+AK GIF+HWGV+SVPGFGSEWFW WKG +R + ++FM KNY PG
Sbjct: 15 WKSLDARPLPAWYDQAKFGIFVHWGVFSVPGFGSEWFWYFWKGLHRPEYVEFMKKNYRPG 74
Query: 396 FTYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGP 575
F+Y +F P FKAEF+DP++WADLF K+GA+YVVLTSKHHEG+T++ S S++WN+V+ GP
Sbjct: 75 FSYPDFGPMFKAEFYDPEQWADLFAKSGARYVVLTSKHHEGWTMWKSNVSWNWNAVDNGP 134
Query: 576 KRDIVGDLAKAVRNTSLKFGVYHSLYEWFXPIYEEDKRKAFKTQTYVDTKLWPDINRSXR 755
RD+VGDLAKAVR T ++FG+YHSLYEWF P++ +D+ + +Q YV+ L +
Sbjct: 135 HRDLVGDLAKAVRKTEVRFGLYHSLYEWFNPLFLKDRESNYTSQYYVEEILQHQLKDIVT 194
Query: 756 LQAPRFMV*RG-LGXXXXYWRXXDLLAXLY 842
P + G G YW D LA LY
Sbjct: 195 TYEPDVVWADGQSGGSSDYWTSKDFLAWLY 224
>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 413
Score = 251 bits (615), Expect = 5e-67
Identities = 110/211 (52%), Positives = 144/211 (68%), Gaps = 3/211 (1%)
Frame = +3
Query: 219 WNDLDTRPLPEWYDKAKIGIFLHWGVYSVPGFG--SEWFWSNWKGGNRQCIDFMTKNYPP 392
W+ LDTRPLP+WYD+AK GI +HWGVYSVP FG +EWFW+ WK G+ Q +DFM +NYPP
Sbjct: 29 WDSLDTRPLPDWYDRAKFGIIMHWGVYSVPSFGVAAEWFWNYWKSGSPQYVDFMKQNYPP 88
Query: 393 GFTYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVG 572
GF+Y +FAP FKAEFFDPD WA L +GAKY V+TSKHHEG+T + S S++WNSV+ G
Sbjct: 89 GFSYADFAPMFKAEFFDPDIWASLISMSGAKYFVITSKHHEGWTNWRSNVSWNWNSVDNG 148
Query: 573 PKRDIVGDLAKAVR-NTSLKFGVYHSLYEWFXPIYEEDKRKAFKTQTYVDTKLWPDINRS 749
P RD++GDLA ++R + +KFG+Y S +EWF PIY D+ + T TY P ++
Sbjct: 149 PHRDLIGDLADSIRASGDVKFGLYFSHFEWFNPIYLTDQANNYNTDTYSQEISQPQLHDL 208
Query: 750 XRLQAPRFMV*RGLGXXXXYWRXXDLLAXLY 842
P ++ G YW+ D LA L+
Sbjct: 209 VTKYKPEYIFSDGDVGPDTYWKSTDFLAWLF 239
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 245 bits (600), Expect = 3e-65
Identities = 109/211 (51%), Positives = 145/211 (68%), Gaps = 3/211 (1%)
Frame = +3
Query: 219 WNDLDTRPLPEWYDKAKIGIFLHWGVYSVPGFGSEWFWSNWKGGNR-QCIDFMTKNYPPG 395
W+ LD+RP P WYDKAK G+F+HWGVYSVP FGSEWFW++WK + CI+FM KNYP G
Sbjct: 27 WDSLDSRPDPPWYDKAKFGVFMHWGVYSVPSFGSEWFWNHWKQQHYPSCIEFMKKNYPSG 86
Query: 396 FTYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGP 575
F+Y +F P FKAEFFDP+ +A L K+GA+Y VLTSKHHEG+T + S S++WNSV+ GP
Sbjct: 87 FSYADFGPMFKAEFFDPNYFAKLVAKSGARYFVLTSKHHEGWTNWKSNTSWNWNSVDNGP 146
Query: 576 KRDIVGDLAKAVRN-TSLKFGVYHSLYEWFXPIYEEDKRKAFKTQTYVDTKLWPDINRSX 752
RD+ D+A A+R ++ FG+Y+SLYEWF P+Y ED+ +KTQ +V K+ P+++
Sbjct: 147 HRDLTDDMATAIRQYKNITFGLYYSLYEWFHPLYLEDQHNKYKTQGFVKGKVIPELHDLV 206
Query: 753 RLQAPRFMV*RG-LGXXXXYWRXXDLLAXLY 842
P ++ G YW LA LY
Sbjct: 207 TKFKPEYIWSDGDWDASPDYWTSKKFLAWLY 237
>SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)
Length = 203
Score = 233 bits (571), Expect = 1e-61
Identities = 102/173 (58%), Positives = 128/173 (73%), Gaps = 8/173 (4%)
Frame = +3
Query: 219 WNDLDTRPLPEWYDKAKIGIFLHWGVYSVPGFGSE-------WFWSNWKGGNRQCIDFMT 377
W+ LD+RP P WYDKAK GIF+HWGVYSVP FG+E WFW W GN ++FM
Sbjct: 29 WDSLDSRPNPPWYDKAKFGIFMHWGVYSVPSFGAESGGTAGEWFWRYWHDGNPAFVNFMK 88
Query: 378 KNYPPGFTYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWN 557
KNYPPGF+Y +FAP FKAEFFDPD++ADL K+GAKY VLTSKHHEG+T + S S++WN
Sbjct: 89 KNYPPGFSYADFAPMFKAEFFDPDEFADLVAKSGAKYFVLTSKHHEGWTNWRSNVSWNWN 148
Query: 558 SVEVGPKRDIVGDLAKAVR-NTSLKFGVYHSLYEWFXPIYEEDKRKAFKTQTY 713
SV+ GP RD++GDLA ++R + +KFG+Y S +EWF PIY D+ + T TY
Sbjct: 149 SVDNGPHRDLIGDLADSIRASGDVKFGLYFSHFEWFNPIYLTDQANNYNTDTY 201
>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 198 bits (484), Expect = 4e-51
Identities = 81/129 (62%), Positives = 100/129 (77%)
Frame = +3
Query: 219 WNDLDTRPLPEWYDKAKIGIFLHWGVYSVPGFGSEWFWSNWKGGNRQCIDFMTKNYPPGF 398
WN LD RP+P WYDKAK GIF+HWGV+SVP FGSEWFW W ++ +DF+ NYPP +
Sbjct: 42 WNSLDKRPIPAWYDKAKFGIFMHWGVFSVPSFGSEWFWKFWHDKDKPYVDFVNNNYPPRW 101
Query: 399 TYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPK 578
+Y +FAP AEFFD ++WADL K+GAKY V TSKHHEG+T +PSK++++WNSVE GP
Sbjct: 102 SYADFAPQLTAEFFDANEWADLLSKSGAKYFVFTSKHHEGWTNWPSKQAWNWNSVENGPH 161
Query: 579 RDIVGDLAK 605
RDIVG L K
Sbjct: 162 RDIVGVLQK 170
>SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)
Length = 155
Score = 189 bits (460), Expect = 3e-48
Identities = 79/128 (61%), Positives = 98/128 (76%), Gaps = 4/128 (3%)
Frame = +3
Query: 219 WNDLDTRPLPEWYDKAKIGIFLHWGVYSVPGFG----SEWFWSNWKGGNRQCIDFMTKNY 386
W LD+RP P WYDKAK GIF+HWG+YSVP +G SEWFW W G+ ++FM KN+
Sbjct: 27 WESLDSRPNPGWYDKAKFGIFMHWGLYSVPSYGDGEASEWFWKYWHDGSSANVNFMKKNF 86
Query: 387 PPGFTYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVE 566
PPGFTY +F P FKAEFFDPD +A+L K+GAKY VLTSKHHEG+T++ S S++WNSV+
Sbjct: 87 PPGFTYADFGPMFKAEFFDPDVFANLIAKSGAKYFVLTSKHHEGWTMWKSNVSWNWNSVD 146
Query: 567 VGPKRDIV 590
GP RD+V
Sbjct: 147 NGPHRDLV 154
>SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)
Length = 476
Score = 172 bits (418), Expect = 3e-43
Identities = 67/123 (54%), Positives = 89/123 (72%)
Frame = +3
Query: 219 WNDLDTRPLPEWYDKAKIGIFLHWGVYSVPGFGSEWFWSNWKGGNRQCIDFMTKNYPPGF 398
W LD RPLP WY+ AK GIF+HWG+YSVPG GSEWFW +W+ G + +++M +NYPPGF
Sbjct: 133 WESLDARPLPSWYEDAKFGIFVHWGLYSVPGVGSEWFWYHWRQGYPEIMEYMWRNYPPGF 192
Query: 399 TYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPK 578
+Y +FA KAE F+ W +L K+GA+Y V T KHH+GF + + S++WNSV+ GP
Sbjct: 193 SYADFASKLKAEMFNATAWHELIAKSGARYFVFTGKHHDGFVNWNTSYSWNWNSVDNGPH 252
Query: 579 RDI 587
RDI
Sbjct: 253 RDI 255
>SB_33577| Best HMM Match : Alpha_L_fucos (HMM E-Value=0.043)
Length = 538
Score = 48.0 bits (109), Expect = 1e-05
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Frame = +3
Query: 363 IDFMTKNYPPGFTYQEFAP--AFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPS 536
I F + + + + AP F D+W V GAK+V LT H GF L+PS
Sbjct: 72 IHFNMQTFNKSMSQGDVAPPDTFNPSELSVDQWVGAAVSFGAKWVTLTLSHFSGFLLWPS 131
Query: 537 KRSFSW---NSVEVGPKRDIVGDLAKAVRNTSLKFGVYHSLY-EWFXPI 671
+ S+ + N+ G D+ DL ++ + +++ G Y S++ WF +
Sbjct: 132 E-SYKYTVRNTKWRGGNGDLAWDLIQSCKKHNIEHGFYLSVHNNWFMDV 179
>SB_40868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 30.3 bits (65), Expect = 2.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 757 YKPPVLWSDGDWE 795
Y P +LW+DGDWE
Sbjct: 14 YMPDILWADGDWE 26
>SB_33174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 29.9 bits (64), Expect = 2.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 757 YKPPVLWSDGDWE 795
YKP +WSDG+WE
Sbjct: 12 YKPEYIWSDGEWE 24
>SB_38237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 483 KYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPKRDIVGDLAKAVRNTSLKFGVYHSLYEWF 662
++ + + H +T S RSF WN K D V D+AK + ++ ++W
Sbjct: 41 QWFIAANSHRVAWT--QSGRSFRWNIFLFNAKGDTVADIAKMLS----EYEDGEMGFDWL 94
Query: 663 XPIYEEDKRKAFKTQ 707
P E R A K +
Sbjct: 95 VPERIESGRHAVKVE 109
>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
Length = 1655
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GAKYVVLTSKHHEGFTLFPS 536
G+K +VLT+ HH T FPS
Sbjct: 805 GSKSLVLTASHHHTITTFPS 824
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,600,091
Number of Sequences: 59808
Number of extensions: 566630
Number of successful extensions: 1149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -