Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J04
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...   212   2e-55
AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen prot...    30   2.4  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    29   3.2  
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    29   3.2  
AL021479-4|CAA16319.1|  301|Caenorhabditis elegans Hypothetical ...    29   5.5  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score =  212 bits (518), Expect = 2e-55
 Identities = 95/211 (45%), Positives = 134/211 (63%), Gaps = 3/211 (1%)
 Frame = +3

Query: 219 WNDLDTRPLPEWYDKAKIGIFLHWGVYSVPGFGSEWFWSNWKGG--NRQCIDFMTKNYPP 392
           W  LD RPLP WYD +K GIF HWG+YSVP F SEW W  WKG   ++  ++F+ KNY P
Sbjct: 22  WESLDNRPLPSWYDDSKFGIFCHWGLYSVPAFRSEWMWWYWKGTQPDKDVVNFVDKNYKP 81

Query: 393 GFTYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVG 572
           G TY +FA  F AE+F+ +++A+    +GA+Y V TSKHHEGFT++PS+ S++WNS+++G
Sbjct: 82  GTTYADFAKDFTAEYFNANQFAETVKTSGARYFVFTSKHHEGFTMWPSRTSWNWNSMDIG 141

Query: 573 PKRDIVGDLAKAVRNTSLKFGVYHSLYEWFXPIYEEDKRKAFKTQTYVDTKLWPDINRSX 752
           PKRDIVG+L  A + T + FG+Y S +EWF P++ +D +  F T  Y +   +P +    
Sbjct: 142 PKRDIVGELRDAFKKTDVHFGLYFSQFEWFHPMFLDDGK--FNTTFYPEQVSYPQMIDIV 199

Query: 753 RLQAPRFMV*RG-LGXXXXYWRXXDLLAXLY 842
               P  +   G       YW+  + LA LY
Sbjct: 200 TKYNPEVVWSDGEWDKSDDYWKAKEFLAWLY 230


>AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen protein
           52 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 402 YQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHH--EGFTLFPSKRSFSWNSVEVGP 575
           ++ FA +++ + +DP  +    V A     VL S+HH  +           S N V+V  
Sbjct: 30  FRRFATSYRTQQYDPTLYVQKMVPADTYQSVLASEHHLPDAVAAVDGSSLGSINGVDVRK 89

Query: 576 KRDIV 590
           K  +V
Sbjct: 90  KEKLV 94


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 606 AVRNTSLKF-GVYHSLYEWFXPIYEEDKRKAFKTQTYVDTKLW 731
           AV  TS    G++HS++     +YE D R++F      D+K W
Sbjct: 581 AVDETSANTTGLFHSMHSLLTVLYERDSRRSFAAN---DSKFW 620


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 606 AVRNTSLKF-GVYHSLYEWFXPIYEEDKRKAFKTQTYVDTKLW 731
           AV  TS    G++HS++     +YE D R++F      D+K W
Sbjct: 169 AVDETSANTTGLFHSMHSLLTVLYERDSRRSFAAN---DSKFW 208


>AL021479-4|CAA16319.1|  301|Caenorhabditis elegans Hypothetical
           protein Y22F5A.6 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 582 DIVGDLAKAVRNTSLKFGVYHSLYEW 659
           + + D+ ++ +N  L  G+Y S Y+W
Sbjct: 175 EFIQDMIRSAKNLGLSVGIYTSFYDW 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,815,100
Number of Sequences: 27780
Number of extensions: 438144
Number of successful extensions: 899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)