Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J04
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28100.1 68415.m03413 glycosyl hydrolase family 29 / alpha-L-...    46   2e-05
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    33   0.24 
At5g65010.2 68418.m08178 asparagine synthetase 2 (ASN2) identica...    29   5.2  
At5g65010.1 68418.m08177 asparagine synthetase 2 (ASN2) identica...    29   5.2  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    29   5.2  
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc...    28   6.8  
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc...    28   6.8  
At1g22310.1 68414.m02791 DNA-binding protein-related contains Pf...    28   6.8  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    28   9.0  
At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin ...    28   9.0  

>At2g28100.1 68415.m03413 glycosyl hydrolase family 29 /
           alpha-L-fucosidase, putative similar to
           alpha-L-fucosidase SP:P10901 from [Dictyostelium
           discoideum]
          Length = 506

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +3

Query: 423 FKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSK-RSFSWNSVE-VGPKRDIVGD 596
           F     +  +W  +   +G   V+LT+KHH+GF L+PS+   +S  S +      D+V +
Sbjct: 76  FNPTHLNASQWVQIAKDSGFSRVILTAKHHDGFCLWPSEYTDYSVKSSQWRNGAGDVVAE 135

Query: 597 LAKAVRNTSLKFGVYHSLYE 656
           LA A +   +  G+Y S ++
Sbjct: 136 LASAAKEAGIGLGLYLSPWD 155


>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 471 KAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPKRDIVGDLAKAVRNTSLKFGVY 641
           K GA   +  SKH     LFPS     W+S +VG K  I+    +A+ + +   GVY
Sbjct: 311 KVGADTDLYVSKHP---VLFPSLNQHEWSSHDVGSKTLILVSKERALSSGTYSIGVY 364


>At5g65010.2 68418.m08178 asparagine synthetase 2 (ASN2) identical
           to asparagine synthetase (ASN2) [Arabidopsis thaliana]
           GI:3859536
          Length = 579

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 228 LDTRPLPEWYDKAKIGI---FLHWGVYSVPGFGSEWFWSNWKGGNRQCIDFMTKNYPPGF 398
           LDTR       +  IGI   ++ WG+      GS WF S  K  +  C  FM  ++PPG 
Sbjct: 126 LDTRDKSFIAARDAIGITPLYIGWGLD-----GSVWFASEMKALSDDCEQFM--SFPPGH 178

Query: 399 TY 404
            Y
Sbjct: 179 IY 180


>At5g65010.1 68418.m08177 asparagine synthetase 2 (ASN2) identical
           to asparagine synthetase (ASN2) [Arabidopsis thaliana]
           GI:3859536
          Length = 578

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 228 LDTRPLPEWYDKAKIGI---FLHWGVYSVPGFGSEWFWSNWKGGNRQCIDFMTKNYPPGF 398
           LDTR       +  IGI   ++ WG+      GS WF S  K  +  C  FM  ++PPG 
Sbjct: 126 LDTRDKSFIAARDAIGITPLYIGWGLD-----GSVWFASEMKALSDDCEQFM--SFPPGH 178

Query: 399 TY 404
            Y
Sbjct: 179 IY 180


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin my5A
            (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
 Frame = +3

Query: 444  PDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKR----SFSWNSVEVGPKRDIVGDLAKAV 611
            P K  DLFV     +  + + HHE F   PS+R    SF  + +E  P  + V  L K V
Sbjct: 1254 PQKSLDLFVFMYL-FQPVENGHHESFAPIPSRRFGAMSFRRSQIEQQP-HEFVDVLLKCV 1311

Query: 612  -RNTSLKFG-------VYHSLYEWFXPIYEEDKRKAF 698
             +N     G       +Y  L  W   ++E +K   F
Sbjct: 1312 SKNVGFSHGKPVAAFTIYKCLIHW--KLFEAEKTSVF 1346


>At4g39040.2 68417.m05530 expressed protein contains PF01985:
           Uncharacterised protein family
          Length = 280

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 342 SNCSKTIRIQNRAQNRRPNVGKCLFLLYHTTLATVVYPNRSNXGEYRLFS 193
           ++CS T  I N  ++ +P    CLFL      A+V   N  N   ++ FS
Sbjct: 8   ASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSNHRNKPRFQSFS 57


>At4g39040.1 68417.m05529 expressed protein contains PF01985:
           Uncharacterised protein family
          Length = 296

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 342 SNCSKTIRIQNRAQNRRPNVGKCLFLLYHTTLATVVYPNRSNXGEYRLFS 193
           ++CS T  I N  ++ +P    CLFL      A+V   N  N   ++ FS
Sbjct: 8   ASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSNHRNKPRFQSFS 57


>At1g22310.1 68414.m02791 DNA-binding protein-related contains Pfam
           profiles PF02178: AT hook motif, PF01429: Methyl-CpG
           binding domain
          Length = 425

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 601 LRRCETQA*NSAFIIRFTSGSXLFTKRTRGRPSKLRRTLTRN 726
           ++R +T+   S+ I + TSG+ +  KR RGRP K+R     N
Sbjct: 59  VKRKKTKERKSSKITKGTSGNKI--KRKRGRPRKIRNPSEEN 98


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 459 DLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSV 563
           DLF+KA  K+VVL +  H   ++ P K    W+ +
Sbjct: 199 DLFLKANYKFVVLDTGDHSPDSMDPDK-MLQWDDI 232


>At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein contains
           Pfam profiles: PF01453 lectin (probable mannose
           binding), PF00024 PAN domain
          Length = 764

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 258 DKAKIGIFLHWGVYSVPGFGSEWFWSNWKGGNRQCIDFMTKNYPPGFTYQEFAPAFKAEF 437
           D  K  + L  G Y   G  SEW +  W GG ++ +  + K     F  +E     +  F
Sbjct: 654 DFGKTVLALITGRYEPEGVVSEWVYREWIGGRKETV--VDKGLEGCFDVEELERVLRISF 711

Query: 438 F 440
           +
Sbjct: 712 W 712


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,609,822
Number of Sequences: 28952
Number of extensions: 406723
Number of successful extensions: 951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)