Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J03
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 48 2e-06
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 27 2.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 2.5
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 27 3.4
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 4.4
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 4.4
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 26 5.9
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 7.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 7.8
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +3
Query: 171 KGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSSKFAVKDYGLTFTEKWNTD 347
+ + G L ++T + +GV F ++ NQ++ G + G L + F K GLT ++ W T
Sbjct: 19 RDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLETSFNDKANGLTISQGWTTA 76
Query: 348 NTLATDITIQDKIAAGLKVTLXRHFCP 428
N L + + + ++ A GL + + F P
Sbjct: 77 NVLESKVGLSEQFAPGLHLNVNTTFSP 103
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/85 (22%), Positives = 36/85 (42%)
Frame = +1
Query: 418 TFAPQTGTKTGELKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQK 597
TF+P T KT L + + + +++ + D + ++G+LAG +D QK
Sbjct: 100 TFSPATAAKTAILNLEHQHPLIHTHASVNALERKFLGDFT--VGHEGFLAGAEFGYDVQK 157
Query: 598 AKFSKNNFALGYQSGDFALHTSVDN 672
S +GY + ++ N
Sbjct: 158 GNVSNYAATIGYLASPLSVALQASN 182
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 711 QIPSGRLXPRIFTIVYACVESKVTRLVT*SKVVLGEL 601
++PSG +I +Y C E+ + T S +LG L
Sbjct: 431 KLPSGEFLSKIVPFIYGCFENSSLNVQTTSIQILGTL 467
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 228 HQTRSWSSGRV*KHQSDSPXLKTSLAFFPRSA*YGGAMSV 109
H + W+SG H S+SP L S F P+ G AM V
Sbjct: 457 HNSAEWASGETTGHSSNSP-LPGSDMFSPQFMRVGTAMGV 495
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.1 bits (57), Expect = 3.4
Identities = 22/96 (22%), Positives = 35/96 (36%)
Frame = +3
Query: 114 TWLPHIMLTSERRPMMSSXKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSS 293
T L + SE+ K F K D + + I ++ +V L+S
Sbjct: 373 TSLSRYLSKSEKETSSDKTKESKFAAKKRDFELSRFDYYSYMQDINGGRKGQEVLSVLTS 432
Query: 294 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLK 401
FA DY L + + D + I +QD + K
Sbjct: 433 -FAANDYNLIHSSLTDIDALRPSIIQLQDIVTEANK 467
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 128 YYADLGKKANDVFXQGLSLWCFQTRPEDQERVWC*IHQRNHLQ-PGKRKGFWQPFLQICS 304
Y+A + + + V+ +S W F +E +C + +N + KG W+ I
Sbjct: 82 YFAVVDVETSQVYYDRISDWIFNAAELGEENKFCVVTSKNQVHLLSLSKGSWEVTNTISC 141
Query: 305 ERLWLDFHREVE 340
E+ L F V+
Sbjct: 142 EKTPLLFCATVQ 153
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 213 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 362
+S SG S + S + V +L S +K + LTF +W + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 129 YGGAMSVFYKFTNWYYFTENSTQIGARDQSLHCPPQDNFD 10
YG A+ +F + Y+ T+++ I A + L C P + D
Sbjct: 264 YGDALVLFEELVIRYFGTDSNPSIDASEFILSCLPYTSLD 303
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +1
Query: 211 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 303
P L + P + P T+KA +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 427 PQTGTKTGELKTSFTNDTVAVNTNLDL 507
P+ T +GE++T+F DT+ + L++
Sbjct: 3565 PEFFTGSGEVQTTFAKDTITITLPLNI 3591
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,823
Number of Sequences: 5004
Number of extensions: 67585
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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