Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J03
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 41 0.001
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 40 0.003
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 33 0.22
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 33 0.29
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 31 1.5
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 31 1.5
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 30 2.0
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 2.7
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 6.2
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 29 6.2
11_06_0513 + 24466131-24469487 28 8.2
01_06_0328 + 28507942-28508610,28509669-28510826 28 8.2
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/81 (24%), Positives = 43/81 (53%)
Frame = +1
Query: 442 KTGELKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNF 621
++G+L+ + ++ +N ++ L+ + P+V+++ V + GV FDT + F+K N
Sbjct: 101 RSGKLELQYLHEYAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNA 159
Query: 622 ALGYQSGDFALHTSVDNGKDS 684
AL + D ++N D+
Sbjct: 160 ALSLTNSDLIASLHLNNHGDT 180
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +1
Query: 442 KTGELKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNF 621
K+G+L + +D A+N+ + L + P++++AA + AG FD+ A +K N
Sbjct: 814 KSGKLDLQYLHDHFALNSTIGLT-STPLIELAATIGTNELSAGAEVGFDSTSASVTKYNS 872
Query: 622 ALGYQSGDFA 651
+ Y DF+
Sbjct: 873 GICYNKHDFS 882
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 445 TGELKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFA 624
+G+++ + ++ + T + + PVV+ + QG G FDT KF+K + A
Sbjct: 140 SGKVEMQYFHENASFATAVGMK-PSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAA 198
Query: 625 LGYQSGDF 648
+G D+
Sbjct: 199 IGVTKPDY 206
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 33.1 bits (72), Expect = 0.29
Identities = 22/98 (22%), Positives = 41/98 (41%)
Frame = +1
Query: 442 KTGELKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNF 621
K+ + + + + +N + L+ A P+V + V + G FDT F+K N
Sbjct: 255 KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNA 313
Query: 622 ALGYQSGDFALHTSVDNGKDSGXQSTRRYLTSWTAASA 735
L + + D ++N DS S ++ +A A
Sbjct: 314 GLSHTTPDLTAALLLNNKGDSLAASYYHKVSKTSAVGA 351
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -3
Query: 604 TLLFVYQTGCVHQPANPGSLVLL 536
TLLFVYQTG P PG L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/79 (21%), Positives = 36/79 (45%)
Frame = +1
Query: 448 GELKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFAL 627
G+ + + +D ++ + L + P+V+++ V + G DT F+K + L
Sbjct: 210 GKAELQYLHDYAGISLGVGLT-SKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGL 268
Query: 628 GYQSGDFALHTSVDNGKDS 684
+ D A +++N DS
Sbjct: 269 TINNSDLAADLTLNNKGDS 287
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 141 SERRPMMSSXKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYG 317
S+ RP M+ KG V L S+ +EF+S Q +G+ F S + VK+YG
Sbjct: 408 SKTRPTMTQLKGATTTVLNLKNMMASDF-LEFSSSCRQYQRTGRTFESGQTLCWVKNYG 465
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 192 FKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 353
F LDL S + G++F SG+ S + V L+ + A+KDY T+ N D T
Sbjct: 277 FHLDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFREAIKDYSTPSTKTLNRDLT 332
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 616 CSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 518
CSW + + TG V P+ G L LLQ +QL+
Sbjct: 34 CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +3
Query: 123 PH-IMLTSERRPMMSSXKGYHFGVFKLDLKTKSE---SGVEFTSGITSNQESGKVFGSLS 290
PH I+L E P +S FG+ KL +S +G T G + + K FG++S
Sbjct: 428 PHNILLDQEFCPKISD-----FGMAKLCANKESIVSIAGARGTIGYIAPEVYSKQFGAIS 482
Query: 291 SKFAVKDYGLTFTE 332
SK V YG+ E
Sbjct: 483 SKSDVYSYGMMILE 496
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -3
Query: 673 HCLRLCGEQSHQIGNLEQS-CSWRTLLFVYQTGC---VHQPANPGSLVLLQRLQLD 518
H LR IG L S CS R L + + C P N GS+ LQRL L+
Sbjct: 686 HSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLE 741
>01_06_0328 + 28507942-28508610,28509669-28510826
Length = 608
Score = 28.3 bits (60), Expect = 8.2
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +3
Query: 123 PH-IMLTSERRPMMSSXKGYHFGVFKLDLKTKSE---SGVEFTSGITSNQESGKVFGSLS 290
PH I+L E P +S FG+ KL +S +G T G + + K FG++S
Sbjct: 449 PHNILLDQEFCPKISD-----FGMAKLCSNKESIISIAGARGTIGYIAPEVYSKQFGAIS 503
Query: 291 SKFAVKDYGLTFTE 332
SK V YG+ E
Sbjct: 504 SKSDVYSYGMMILE 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,860,654
Number of Sequences: 37544
Number of extensions: 467671
Number of successful extensions: 1126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -