Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J03
(849 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) 111 7e-25
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 30 2.7
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08) 29 6.3
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5) 28 8.3
>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
Length = 379
Score = 111 bits (267), Expect = 7e-25
Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 5/227 (2%)
Frame = +3
Query: 171 KGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDN 350
KGY FG K+DLKT +++GVEF + +S ++GKVFGSL +K+ DYG++ +EKW TDN
Sbjct: 116 KGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYKYSDYGISLSEKWTTDN 175
Query: 351 TLATDITIQDKIAAGLKVTLXRHFCPTDWN*NWRIEDLIHQ*XXXXXXXXXXXXXXXXXX 530
L+++IT++D+IA GLK+ F P + +I+ Q
Sbjct: 176 VLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQ---DYLHATGDVDFDFAGP 232
Query: 531 XXXXTKLPGLAGW-CTHPV*Y--TKSKVLQE--QLCSRLPIW*LCSPHKRRQW*RFGGSI 695
+ + G GW + V Y +KSK++ L R + + S +F GSI
Sbjct: 233 TVQGSAVVGYEGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAVNDAS--KFTGSI 290
Query: 696 YQKVSDKLDCGVSMKWTAGSADXLSXXGXXYALDQNXXLXXXIXXXS 836
Y ++S L+ + W GS++ G Y +D++ L + S
Sbjct: 291 YHQISKNLEVAAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNS 337
Score = 90.6 bits (215), Expect = 1e-18
Identities = 37/85 (43%), Positives = 58/85 (68%)
Frame = +1
Query: 418 TFAPQTGTKTGELKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQK 597
TFAP TG K+ ++KT++ D + ++D D AGP V +AV+ Y+GW AG +DT K
Sbjct: 198 TFAPNTGKKSAKIKTAYKQDYLHATGDVDFDFAGPTVQGSAVVGYEGWHAGYQVAYDTSK 257
Query: 598 AKFSKNNFALGYQSGDFALHTSVDN 672
+K NNF+LGY++ DF +H++V++
Sbjct: 258 SKLIANNFSLGYRAKDFQIHSAVND 282
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 122 PPYYADLGKKANDVFXQGLSLWC 190
P Y DLGK+A DVF +G C
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGC 122
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 463 SFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQ--FDTQKAKFSKNNFALGYQ 636
++TN A++T +AGPVV V+A LN + +Q F T KA+ NF
Sbjct: 213 NYTNPICALHTVTKTSVAGPVVTVSAPLNDPVAKTVLVSQEFFITAKAEI---NFEWRAS 269
Query: 637 SGDFALHTSVDNGKD 681
D A T+++ D
Sbjct: 270 CADSAAQTAIEGNAD 284
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -1
Query: 687 PRIFTIVYACVESKVTRLVT*SKVVLGELCFLCIKLGVYTSQPTLVV*YCC 535
PR+FT +YACV V V +CF C+ L V P + C
Sbjct: 1188 PRVFTCLYACVNLSV--------CVCLPVCFSCVHLSVRVRSPVCSRAFTC 1230
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -1
Query: 687 PRIFTIVYACVESKVTRLVT*SKVVLGELCFLCIKLGVYTSQPTLVV*YCC 535
PR+FT +YACV V V +CF C+ L V P + C
Sbjct: 1151 PRVFTCLYACVNLSV--------CVCLPVCFSCVHLSVRVLSPVCPRVFTC 1193
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 687 PRIFTIVYACVESKVTRLVT 628
PR+FT ++ACV V+R++T
Sbjct: 1299 PRVFTCLFACVYPSVSRVLT 1318
>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
Length = 614
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 119 APPYYADLGKKANDVFXQGLSLWCFQTRPEDQERVW 226
APP+ A G + F G ++WCF T P+ W
Sbjct: 28 APPHLAVDGVNMS-TFATGSTIWCFGTSPDPTHGGW 62
>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 240 SGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 383
SG+ +ESG+ SL+ A L T+ NTD T TD T Q+K
Sbjct: 65 SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111
>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 972
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -3
Query: 415 LXRVTLRPAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLV 236
L R + ++ S ANVL V+ SV +KP LEE L W +
Sbjct: 861 LVRPLCNEMPLCNYTYSSAANVLEVYELSVGIKPSEVEILLEELKSSGALLEWPQD---A 917
Query: 235 NSTPDSLL 212
++TP++++
Sbjct: 918 STTPETVI 925
>SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)
Length = 291
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 490 NTNLDLDLAGPVVDVAAVLNYQG--WLAGVHTQFDTQKAKFSKNNF 621
N L +DL V V VL + WL +T F+T+K K +KN+F
Sbjct: 95 NLQLYIDLGLKVTKVYRVLEFDQSPWLKQ-YTNFNTEKRKNAKNSF 139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,620,017
Number of Sequences: 59808
Number of extensions: 542095
Number of successful extensions: 1169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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