Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J02
(837 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5) 30 2.7
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) 30 2.7
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 30 2.7
SB_27175| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 29 4.7
SB_21865| Best HMM Match : DUF1010 (HMM E-Value=1.5) 29 6.2
SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69) 29 6.2
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13) 28 8.2
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +2
Query: 395 SEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLVIPGCGSTPETLQDHLHQGP 574
+ M+D++ + RV+ + LLL SM +L +L + + C +TP+ H P
Sbjct: 427 NSAMMDALLNNRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
Query: 575 NSSHSYCPHNSYPTTKR 625
++ C H KR
Sbjct: 487 GNNKREC-HAKPDNNKR 502
>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +1
Query: 16 LSHRNISKVGVVLIGY*INYHRV--SSKRISL----VSSKHKMRAFVVLACVAMAYGRPE 177
+SH + + + +IGY +YHRV S I L +SS H++ F+ L G P
Sbjct: 637 VSHFLLLGIPLRIIGYPTSYHRVVFLSSGIPLPIIGLSSYHRVSHFLSLGIPLPIIGIPL 696
Query: 178 PPVGYSYSAPR 210
P +GY S R
Sbjct: 697 PIIGYPTSYHR 707
>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = -1
Query: 474 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 304
N D+F +++ + + R S T+S+I + +A TT++++I + A++G
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552
Query: 303 RKAT*GSRMTTNSNSSVS 250
+K T T+S +S S
Sbjct: 553 KKNTSRPSSVTSSLTSSS 570
>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
Length = 417
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +2
Query: 485 PQNQLSKDFLVIPGCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAGXXA 661
P+++L + +PG G P Q H+GP + TK D + G A
Sbjct: 309 PRSELRRQRFALPGLGCYPWRKQTFRHEGPTHIRTMSTTQQSKITKTITDAAVITGLVA 367
>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
Length = 1259
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +2
Query: 485 PQNQLSKDFLVIPGCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAGXXA 661
P++ L + +PG G P + Q H+GP + TK D + G A
Sbjct: 999 PRSALRRQRFALPGLGCYPWSKQTFRHEGPTHIRTMSTTQQSKITKTINDAAVITGLVA 1057
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +2
Query: 485 PQNQLSKDFLVIPGCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAGXXA 661
P+++L + +PG G P Q H+GP + TK D + G A
Sbjct: 1612 PRSELRRQRFALPGLGCYPWRKQTFRHEGPTHIRTMSTTQQSKITKTITDAAVITGLVA 1670
>SB_27175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1720
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +2
Query: 485 PQNQLSKDFLVIPGCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAGXXA 661
P++ L + +PG G P + Q H+GP + TK D + G A
Sbjct: 1612 PRSALRRQRFALPGLGCYPWSKQTFRHEGPTHIRTMSTTQQSKITKTITDAAVITGLVA 1670
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Frame = -1
Query: 498 NWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAA----AKGESTTETESIRRV 331
N +Y N+D YKR T + +S+ SE+Q + + E T + +V
Sbjct: 1263 NQLMEQYRNVDPDEYKRMTEEKKQFQQHVASLKSESQRSKTLLENVRNELTKTKAELTKV 1322
Query: 330 SAAKGNAASRKAT*GSRMTTNSNSSVSAADRGRAE 226
A N + + S+M + S S + +AE
Sbjct: 1323 QAELLNVKNDQQKAQSQMEAIKSQSTSVEGKNQAE 1357
>SB_21865| Best HMM Match : DUF1010 (HMM E-Value=1.5)
Length = 359
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 401 VMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLVIPGCGSTP 541
+++ SVA RV + LYR Y + FL + C STP
Sbjct: 123 IVISSVAISRVSLYRVSLYRKYRYVEYRYIESIVTSFLALSSCSSTP 169
>SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 756
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 542 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 652
+TL + H+ NS+H+Y + PT R T I G
Sbjct: 563 QTLIEKQHEQRNSNHAYSEKSKAPTADFRPSTAITVG 599
>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 392 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLV 517
A +V + D++V L LL NTSMF+ QN +SK ++
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVI 304
>SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13)
Length = 1606
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/59 (25%), Positives = 22/59 (37%)
Frame = +2
Query: 485 PQNQLSKDFLVIPGCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAGXXA 661
P++ L + +PG G P Q H+GP + TK D + G A
Sbjct: 862 PRSALRRQRFALPGLGCYPWGKQTFRHEGPTHIRTMSTTQQSKITKTITDAAVITGLVA 920
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,100,056
Number of Sequences: 59808
Number of extensions: 347871
Number of successful extensions: 1333
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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