Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J02
(837 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23230.1 68414.m02906 expressed protein 34 0.10
At5g28120.1 68418.m03396 hypothetical protein 30 1.7
At5g23850.1 68418.m02800 expressed protein 30 2.2
At3g30816.1 68416.m03949 hypothetical protein 30 2.2
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 30 2.2
At4g05300.1 68417.m00803 hypothetical protein 29 3.8
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 29 3.8
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 28 6.7
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 28 6.7
At5g28110.1 68418.m03395 hypothetical protein 28 8.8
At4g21900.1 68417.m03166 MATE efflux family protein similar to r... 28 8.8
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 28 8.8
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai... 28 8.8
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -1
Query: 480 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 328
Y+N D FL + + +SA E+S++ Q AAA G S T ++S+ VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 453 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 301
++S R STRISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At5g23850.1 68418.m02800 expressed protein
Length = 542
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +2
Query: 431 VDTLVLLLYRNTSMFTYLPQNQLSKDFLVIPGCGSTPETLQDH-LHQGPNSSHSYCPHNS 607
+DT VLL + + T Q Q P T + LH N + + CP N
Sbjct: 60 LDTTVLLEKKAATTTTTKTQTQTITPKYPRPTTVITQSPKPEFTLHCSANETTASCPSNK 119
Query: 608 YPTTKRRED 634
YPTT ED
Sbjct: 120 YPTTTSFED 128
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 453 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 298
K+S R STRISA+E + S KGEST T I +GN +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232
>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 938
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 450 RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 298
+S R STRISA+E + S KGEST E+ RR KG++ +
Sbjct: 843 KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895
>At4g05300.1 68417.m00803 hypothetical protein
Length = 387
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -1
Query: 453 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRKAT*GSR 280
++S R STRISA+E + S KGEST E+ +R KG++ + R
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQRE-SLR 359
Query: 279 MTTNSNSSVSAADRGRAE 226
+ V A + +A+
Sbjct: 360 WEPMDKTDVGPASKPKAD 377
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 448 PLVQKHIYVHVPPPEPVEQRLPRYP 522
P++Q Y+H PPP+P Q P YP
Sbjct: 337 PMLQ--YYMHPPPPQPPHQDRPFYP 359
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Frame = -1
Query: 534 EPQPGIT---RKSLLNWFWGRY 478
EP+PG+ R SL++W WG Y
Sbjct: 577 EPEPGLRPGLRSSLVDWVWGLY 598
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 530 GSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRI 643
G + +QDHL PN +H + + +YP K ++ I
Sbjct: 871 GKSAARIQDHLR--PNGAHRWHNYKTYPNIKELDEAAI 906
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 453 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 301
++S R S RISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At4g21900.1 68417.m03166 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
MatE
Length = 1094
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -1
Query: 438 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 292
VS+ IS ESS+T+ A+ AAAKG+ + ++ + A G + R T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -1
Query: 501 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 328
LN ++G ID+ RST + T+ S S SEA + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743
>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
(Double minute 2 protein) (Swiss-Prot:P23804) [Mus
musculus]
Length = 785
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 440 LVLLLYRNTSMFTYLPQNQ-LSKDFLVIPGCGSTPETLQDHLHQGPNSSHS 589
L+ ++ TSMF N+ L+KD + + T T+QDH + N H+
Sbjct: 103 LIATMFCGTSMFWSNELNRKLNKDMVAVVSRCPTCATMQDHQIEDRNQRHN 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,358
Number of Sequences: 28952
Number of extensions: 248453
Number of successful extensions: 956
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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