Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I24
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431...    28   8.1  

>05_07_0064 +
           27440520-27440942,27442387-27442998,27443109-27443175,
           27443271-27443362,27443493-27443708,27443869-27444006,
           27444325-27444474
          Length = 565

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 158 AVAGRDGRCFERRRPQPTSNVVPVRDLQWPLLVQCL 51
           A A RDG  + RRRP  ++ +V +    W  LV  L
Sbjct: 255 APARRDGPVYARRRPPLSAGIVALAAWAWSYLVLAL 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,476,549
Number of Sequences: 37544
Number of extensions: 247821
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)