Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I24
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           31   0.89 
SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)          29   4.7  
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = -2

Query: 690  RRTVRGRHELRVSGXGVANNSVEARGGRQRCTQPCALSRQLRAK-----VYSPCTASPSR 526
            R   RG  E R  G     +  E RGG     +P    RQ R +     VY+P  AS  R
Sbjct: 1083 REPARGGDE-RDGGAWRGRDREEPRGGDAWRDKPEESGRQARPEELKCWVYNPRPASSHR 1141

Query: 525  DSCWDLLSPLCP 490
             +C++L  P+CP
Sbjct: 1142 RTCYELY-PICP 1152


>SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)
          Length = 679

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 645 GVANNSVEARGGRQRCTQPCALSRQLRAKVYSPCTASPS 529
           G  NNSV    GR  CT      R+    + + CT  PS
Sbjct: 268 GCPNNSVAIETGRTNCTCVSGFYRKSGESINNTCTGPPS 306


>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 681 VRGRHELRVSGXGVANNSVEARGGRQ---RCTQPCALSRQL 568
           VR RH  R  G GV +    ARGGR    RCT    LSR L
Sbjct: 511 VRSRHPPR-QGPGVIDVPQGARGGRGGRLRCTSTTPLSRTL 550


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,183,502
Number of Sequences: 59808
Number of extensions: 261873
Number of successful extensions: 877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)