Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I23
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54880| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.095
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     29   4.7  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)      29   4.7  

>SB_54880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 34.7 bits (76), Expect = 0.095
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
 Frame = +1

Query: 217 SSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIV 396
           S +Y  PD     L Y   + ++GV + +    +NTF     K  E  PW    EVS + 
Sbjct: 146 SIHYTDPDASIP-LCYGELLASQGVFFSVTASTDNTFIHTDNKNKEKEPWITSVEVSEVA 204

Query: 397 DNDNVFMILY---KELYYRDIYARVPGGPKPEQRFHSF-YNYCD 516
               +   LY    E Y +DIY       K    F +F + +CD
Sbjct: 205 KKLQLDFELYPVEAECYIQDIYDENSSEGKEVFTFLTFRHLFCD 248


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 130 SDDYNEGGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVK 249
           S  Y+   +  YG Y+A+   +Y P   RS +    DMVK
Sbjct: 19  SSPYSSVHFPVYGQYDARQERYYGPPLPRSQHPTRQDMVK 58


>SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = -3

Query: 237 RHFIIRRPVIFRLVVFCGLCFIVAIGFVTSL---IIIVAGIHGC 115
           ++ ++R+ ++  +++  G+ FIV  GF+ S+   IIIV  +H C
Sbjct: 610 QYIMLRQHLMVAIIIVLGITFIVIAGFLWSVWTAIIIVHSLHPC 653


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -2

Query: 229 YNKKTCHIPARSVLWTVLHSRHRIRNLPHYNRRWNTWLLIESNSIHTLEFMRLNEYLI*E 50
           Y+KKT  + A  V+  +      I+ L  +N   +  L+ E   +   +FM+ N Y    
Sbjct: 749 YDKKTGDVVAVKVIKNIEKYSLCIKMLDWFNHHGHMCLVFEKMGLSVFDFMKDNNYE--P 806

Query: 49  *PIQAIRNFVYVLL 8
            P+  +R+  Y L+
Sbjct: 807 YPLDQVRHISYQLI 820


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +1

Query: 154 YESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEG-VTYEILNLYENTFP 330
           Y+S   Y++       P Y  SS YK   + K   +Y  + + E    Y+   LY+++ P
Sbjct: 596 YKSSSLYKSSPLYKSSPPYKSSSLYKSSSLYKSSSLYKSSSLYESPPLYKSSPLYKSSPP 655

Query: 331 TLTEKYFENTPWPDEDEV---SPIVDNDNVFMI--LYK 429
             +   + ++P      +   SP+  + +++ I  LYK
Sbjct: 656 YKSSSLYRSSPLCKSSSLYKSSPLYKSSSLYEIVPLYK 693


>SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)
          Length = 536

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 124 YSSDDYNEGGYESYGDYEAQST----EHYEPEYDRSSYYKMP 237
           Y ++ Y EG Y+  GDY+  +     + Y PEYD   Y + P
Sbjct: 458 YGAEIY-EGQYQEGGDYQYNAELGYQQDYSPEYDSQQYGQEP 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,598,188
Number of Sequences: 59808
Number of extensions: 510972
Number of successful extensions: 1234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)