Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I22
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   4.4  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    26   5.8  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    26   5.8  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 453 PSSPNLTSSTPHPVT 409
           PS+PN TSS+P P+T
Sbjct: 144 PSNPNATSSSPPPLT 158


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 386 GVDVNNASVTGWGVLDVRFGEEGCQESVEICCTN 487
           GV+V+N  +T   VL  ++G+EG  + V+I C N
Sbjct: 8   GVNVSNDGITV--VLGSQWGDEGKGKLVDILCDN 39


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
 Frame = -1

Query: 348 LQDSPFLSVNT-----LLLSVGLTMMSSRXXXXXXXXXXXXPKMFRSKAGSKVVSWARPT 184
           LQ  P LS NT     L+  + L   +SR                 +K  +++VS +   
Sbjct: 207 LQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTNTAKYANELVSCSMLD 266

Query: 183 VTSTASKSERIALLLLKHSEKENIQNFTSLYYENYALISTLSLF 52
            +ST SKS    + L  H    ++QN +     +   +   SLF
Sbjct: 267 SSSTLSKSVNSKINLKSHQSSSSVQNSSRKLTSSQLTLRQSSLF 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,148
Number of Sequences: 5004
Number of extensions: 58757
Number of successful extensions: 254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)