Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I22
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0017 + 12297539-12297697,12298191-12298229,12298457-122988...    32   0.65 
02_04_0054 + 19279579-19280772                                         32   0.65 
12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368     30   2.0  
01_02_0007 + 10132380-10133201                                         25   5.7  
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484...    29   6.1  
03_03_0249 + 15832086-15833261                                         29   6.1  
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445...    28   8.1  
02_05_0814 - 31970558-31971126,31971242-31971413                       28   8.1  

>11_04_0017 +
           12297539-12297697,12298191-12298229,12298457-12298825,
           12298921-12299058
          Length = 234

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 280 QVPRAGLRRRGGRSEDVQKQGRV*GRVLGETDCYQHRQQKR 158
           +VP A ++  GGR  D +  GR+ G   G   C   RQ K+
Sbjct: 2   EVPAASVKGGGGRRSDEEAPGRIAGNGAGNVACLFTRQGKK 42


>02_04_0054 + 19279579-19280772
          Length = 397

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 415 RHAGVINVHPFIVLVTQIVGDAFARFPVLIRKHAVALRRLNDDVFQVPRAGL--RRRGGR 242
           RH G+  +   +   T ++ +A+    +L+ KHA  L  + ++   V RA L  RRR  R
Sbjct: 316 RHPGIFYLSRVLGTQTVVLREAYGGGSLLLAKHAHPLATIREEYSAVMRAALPPRRRRSR 375

Query: 241 SED 233
             D
Sbjct: 376 ESD 378


>12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368
          Length = 487

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -1

Query: 537 STSKGSGCGFGTGSVMGLVQQISTLSWQPSSPNLTSSTPHPVTLALLTSTPSL 379
           S+S+G G G G G   G     +T S+  SSP+   STP P + A   + P L
Sbjct: 154 SSSRGGGGGRGVGGGSGR----ATPSFPGSSPHHYPSTPTPASAAAAANYPPL 202


>01_02_0007 + 10132380-10133201
          Length = 273

 Score = 25.4 bits (53), Expect(2) = 5.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 485 NPITEPVPKPQPDP 526
           NP  +P+P+PQP P
Sbjct: 67  NPQPQPLPQPQPQP 80



 Score = 21.8 bits (44), Expect(2) = 5.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 500 PVPKPQPDPFEVEG 541
           P P+PQP P  + G
Sbjct: 88  PQPQPQPQPLPLPG 101


>07_03_0557 +
           19447367-19447517,19447630-19447730,19448359-19448480,
           19448725-19448912,19449000-19449178,19449370-19449711,
           19449795-19449859,19450259-19450317,19450486-19450573,
           19450653-19450722,19450759-19450992,19451072-19451411,
           19451643-19451691,19452690-19452780,19453077-19453442
          Length = 814

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 622 PGWWLCWTL 648
           PGWWLCW L
Sbjct: 689 PGWWLCWWL 697


>03_03_0249 + 15832086-15833261
          Length = 391

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 483 VQQISTLSWQPSSPNLTSSTPHPVTLALLTSTPSLFLLH 367
           ++++ST +  P++P  + +TP P + A    +PS  + H
Sbjct: 24  LRRLSTRASAPTTPRASPATPSPSSAAAAAPSPSALVAH 62


>12_01_0551 +
           4446937-4447353,4449141-4450013,4451206-4451244,
           4452339-4452581
          Length = 523

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 479 CTNPITEPVPKPQPDPFEVEGMRLQ 553
           C  P   P+P+P+P P  VE +R++
Sbjct: 37  CPPPPPPPLPRPRPPPPAVEALRIR 61


>02_05_0814 - 31970558-31971126,31971242-31971413
          Length = 246

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -1

Query: 537 STSKGSGCGFGTGSVMGLVQQISTLSWQPSSPNLTSSTPHPVTLALLTSTPS 382
           S+S G G G G GS        +  +  PS+P  T +TP+P T    T  PS
Sbjct: 129 SSSGGGGGGGGGGSTPSSPSSPTPTTPNPSTP--TPTTPYPSTPMPTTPYPS 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,869,851
Number of Sequences: 37544
Number of extensions: 464766
Number of successful extensions: 1843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)