Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I22
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)                      38   0.008
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)            29   4.7  
SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    29   6.2  
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)            29   6.2  
SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      28   8.2  

>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 285

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 600 EAQFGEFPWVVALLDALNESYAGVGVLIHPQVVMTGXHIXYXY 728
           EA+ G+FPW +ALL    + Y G G L+H + V+TG H    Y
Sbjct: 34  EAKAGQFPWQIALL-FKRQQYCG-GALVHERWVVTGAHCFNPY 74


>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -1

Query: 462 SWQPSSPNLTSSTPHPVTLALLTSTPSLFLLHK**GTHLQDSPFLSVNTLLLSVGLTMMS 283
           S+ P+ P      P+P T      TPS +   +   ++   +PFLS +T LLS   T++S
Sbjct: 522 SYLPTQPYYPPPQPYPPTQPSYPPTPSSYPPTQ--PSYPPTAPFLSADTTLLSSDTTLLS 579


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 474  ISTLSWQPSSPNLTSSTPHPVTLALLTSTP 385
            +S  S  PS  +LTS TP PV+L+  TS P
Sbjct: 1066 VSLTSKTPSPVSLTSKTPGPVSLSSKTSGP 1095


>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1091

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 623  GELAELSLRTHPSGDGHSDPHGVPVAASLQLR-RGPAAALA 504
            G  AE +   H + DG + P   P+AA+ Q + R PA ALA
Sbjct: 944  GPGAERATDPHAAADGGTPPTRPPLAAAQQTKERAPATALA 984


>SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)
          Length = 599

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 623 GELAELSLRTHPSGDGHSDPHGVPVAASLQLR-RGPAAALARVP 495
           G  AE S   H + DG + P   P+AA+ Q + R PA AL R P
Sbjct: 549 GPGAERSTDPHAAADGGTPPTRPPLAATQQTKERAPATAL-RTP 591


>SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 623 GELAELSLRTHPSGDGHSDPHGVPVAASLQLR-RGPAAALARVP 495
           G  AE S   H + DG + P   P+AA+ Q + R PA AL R P
Sbjct: 408 GPGAERSTDPHAAADGGTPPTRPPLAATQQTKERAPATAL-RTP 450


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 623  GELAELSLRTHPSGDGHSDPHGVPVAASLQLR-RGPAAALARVP 495
            G  AE +   H + DG + P   P+AA+ Q + R PA AL R P
Sbjct: 1275 GPRAERATDPHAAADGGTPPTRPPLAAARQTKERAPATAL-RAP 1317


>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
          Length = 1037

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 623  GELAELSLRTHPSGDGHSDPHGVPVAASLQLR-RGPAAALARVP 495
            G  AE +   H + DG + P   P+AA+ Q + R PA AL R P
Sbjct: 889  GPGAERATDPHAAADGGTPPTSPPLAAAQQTKERAPATAL-RAP 931


>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 416 GWGVLDVRFGEEGCQESVEICCTNPITEPVPKPQPDPFEVEG 541
           GW + DV+F      E   +    P+ EP P+P P P    G
Sbjct: 312 GWTLEDVQFELIDMNEEKPV--DEPVAEPKPEPPPQPDSAPG 351


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 584 GDGHSDPHGVPVAASLQLRRGPAAALARV 498
           G  HSDP     A  ++ RRGP +A+AR+
Sbjct: 350 GRVHSDPETPRRAERVRARRGPGSAIARL 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,259,241
Number of Sequences: 59808
Number of extensions: 499192
Number of successful extensions: 1658
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)