Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I20
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    29   0.79 
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos...    27   2.4  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   5.6  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.8  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 452 YINKISICCEFAFLSHPSVCEEI*YSYFCDSGSTYDKWKA 333
           ++NK+  CC    L +P + +++ ++ FC   S+Y  +K+
Sbjct: 125 FLNKVCECCNHMLLDNPKIKQDLPFA-FCYLFSSYFSYKS 163


>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 492 SPSGFNCLKFNYIRLTINHKYVYRIV*LVSIKKKCRKAF 608
           +PSG+ CL   Y R   + K +  IV   S+K K +KAF
Sbjct: 73  NPSGYECLLTGYARGIGSVKAIMEIV--RSVKSKNKKAF 109


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 329 ELLSTYRMLILNHKNNCIKFLHKRMDDLETQ 421
           +  ST++ ++LNHK+   +F+    D+   Q
Sbjct: 179 DAFSTFKSILLNHKSQVAEFISYHFDEFFKQ 209


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 359 GSTYDKWKAIQNIFGILRCFKISIFVIL 276
           GST   W ++ N FG+L    ISI+  L
Sbjct: 112 GSTLFSWISVANAFGLLLLRLISIYDFL 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,035
Number of Sequences: 5004
Number of extensions: 61373
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)