Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I20
         (818 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    29   4.9  
At5g66500.1 68418.m08385 pentatricopeptide (PPR) repeat-containi...    28   6.5  
At3g21090.1 68416.m02666 ABC transporter family protein similar ...    28   6.5  

>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 365 DSGSTYDKWKAIQNIFGILRCFK-ISIFVILYDRFSHN 255
           +SG  ++ W ++  + G+ +C K + +  +LY  F  N
Sbjct: 710 ESGKAFEGWDSVAGLEGVTQCMKEVVLIPLLYPEFFDN 747


>At5g66500.1 68418.m08385 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 532

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 334 AFHLSYV-DPESQK*LYQISSQTDG*LRNANSQQILILFMYIHR*YQSSYTLHNHRPV 504
           A H  ++ D   Q+ L  ++SQ    LR+ N    L LF+ IHR      + H   PV
Sbjct: 34  ATHADHLFDELPQRDLSSLNSQLSSHLRSGNPNDTLALFLQIHR-ASPDLSSHTFTPV 90


>At3g21090.1 68416.m02666 ABC transporter family protein similar to
           ATP-binding cassette, sub-family G (WHITE), member 2
           GB:NP_036050 from [Mus musculus]
          Length = 691

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 353 TYDKWKAIQNIFGILRCFKISIFVIL 276
           TY KW  +  +  IL C+++  FV+L
Sbjct: 602 TYSKWWDLAAVVAILVCYRLLFFVVL 627


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,065,283
Number of Sequences: 28952
Number of extensions: 293802
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)