Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I19
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    44   4e-05
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    33   0.068
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   4.4  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +1

Query: 163 NREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNADEAPANPTSAAS 333
           +RED L++FC+    D  + +FFLES+NW  ++A +  +E     ++    P+S  S
Sbjct: 2   DREDILKEFCNRNNIDVSQGRFFLESTNWNYELATALLHEVIPPEEDHGLQPSSDVS 58


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 32.7 bits (71), Expect = 0.068
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +1

Query: 154 MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNAD 300
           M  +    +  FC +T +  ++++ +L  ++  L  A++ F+E+GG  D
Sbjct: 1   MDGDEASLVANFCAITNSTPEKAQEYLSVADGDLSTAITLFFESGGVTD 49


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 289 GNADEAPANPTSAASFSVLPDS 354
           G+  ++P  P+S++SFSV P+S
Sbjct: 175 GDYSDSPLEPSSSSSFSVPPES 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,084
Number of Sequences: 5004
Number of extensions: 48176
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)