Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I19
(850 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15410.1 68417.m02355 UBX domain-containing protein low simil... 46 2e-05
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-... 42 4e-04
At3g12760.1 68416.m01593 expressed protein similar to RP42 prote... 38 0.011
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-... 34 0.10
At4g04210.1 68417.m00597 UBX domain-containing protein similar t... 34 0.14
At1g05040.1 68414.m00505 hypothetical protein 34 0.14
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 28 6.8
At4g10790.1 68417.m01759 UBX domain-containing protein low simil... 28 9.0
>At4g15410.1 68417.m02355 UBX domain-containing protein low
similarity to XY40 protein [Rattus norvegicus]
GI:2547025; contains Pfam profile PF00789: UBX domain
Length = 421
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 169 EDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNADEAPANPT 321
E+ + F ++T + + + FFLES W LD A+S+F +N A P NPT
Sbjct: 7 ENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEP-NPT 56
>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 649
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 163 NREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNADEAPANP 318
N+E+ ++QFC++ G D + +LE W L VA+ F ++ +NP
Sbjct: 426 NKEEIIKQFCEIVGLHPDVAVAYLERCQWSLQVAIDYFMNEAYFTEDVTSNP 477
>At3g12760.1 68416.m01593 expressed protein similar to RP42 protein
[Homo sapiens] GI:9896486; contains Pfam profile
PF00627: UBA/TS-N domain, PF03556: Domain of unknown
function (DUF298)
Length = 250
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 154 MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFY 279
+S + D L+QF +TGA E + L++S+W L+ A FY
Sbjct: 4 LSRSNRDKLQQFVAITGASEKNALQALKASDWHLEAAFDVFY 45
>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
domain-containing protein-related contains weak hit to
Pfam F00627: UBA/TS-N domain; supported by tandem
duplication of ubiquitin-associated (UBA)/TS-N domain
protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
thaliana]
Length = 508
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 163 NREDTLRQFC-DVTGADEDRSKFFLESSNWQLDVALSSF 276
+R +++ +FC V G + ++ +LE SNW +++A+ SF
Sbjct: 100 SRNESIARFCYAVAGVSVEEARAYLERSNWNINLAVDSF 138
>At4g04210.1 68417.m00597 UBX domain-containing protein similar to
XY40 protein [Rattus norvegicus] GI:2547025; contains
Pfam profile PF00789: UBX domain
Length = 303
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +1
Query: 493 FYAGGSERSGQQILGPSKGRKDIVSEMFKSVRERGAVVFEDEP 621
+Y GG E+SG + PSK KD V E+F R+ GAV EP
Sbjct: 42 YYTGG-EKSGMLVQDPSK--KDDVDEIFNQARQLGAVEGPLEP 81
>At1g05040.1 68414.m00505 hypothetical protein
Length = 166
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 169 EDT-LRQFCDVTGADEDRSKFFLESSNWQLDVALSSF 276
EDT + +FC T A +D + ++LE +W L+ A+S F
Sbjct: 4 EDTNVTRFCKATSACKDAAFYYLEGFDWNLEDAISGF 40
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 409 FLFSGTFVPEVRRAVIPYRCLAEQRMMPHSLD*LEPHLHYHRSHRNLKEQHLIASL-RIL 233
FLFS T EVR+ CL R ++ + H +H+ +++ H+IASL R
Sbjct: 244 FLFSATVPEEVRQI-----CLVALRRDHEFVNCV--HEGTIETHQQVRQMHMIASLDRHF 296
Query: 232 KRIYCDLRQH 203
+Y LR+H
Sbjct: 297 SLLYTLLREH 306
>At4g10790.1 68417.m01759 UBX domain-containing protein low
similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1
protein) {Homo sapiens}; contains Pfam profile PF00789:
UBX domain
Length = 480
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 172 DTLRQFCDVTGA-DEDRSKFFLESSNWQLDVALSSFYENGGNADEA 306
D L F +TG D D L++ W L++A+SSF + +A +
Sbjct: 6 DKLGYFQAITGLEDADLCTEILQAHGWDLELAISSFTSSDQDASSS 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,451
Number of Sequences: 28952
Number of extensions: 248438
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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