Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I18
         (865 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_4764| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 26/40 (65%)
 Frame = +3

Query: 15  LMQMGSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTP 134
           LM   S D RTDF+NGTNGA  +TED    +D+ Y  +TP
Sbjct: 126 LMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFYKLITP 165


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 5/27 (18%), Positives = 18/27 (66%)
 Frame = -2

Query: 405 WHIYFWFMFTLFMHLFFYWNMTFFYFC 325
           +H Y+++ +  + + ++Y+   ++Y+C
Sbjct: 7   YHYYYYYYYYYYYYYYYYYYYYYYYYC 33


>SB_4764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
 Frame = +1

Query: 574 IGSQNFFFLQESEIDSPVGTPQP----PAIPNQVSPPGTYPNSDFYQSTLCT 717
           IG     F  E  + S V  P P    P  P  VSPPG+   S    S LC+
Sbjct: 19  IGVPKLAFKAEDSLSSDVVLPTPDRSVPPTPPAVSPPGSGYVSPTLHSPLCS 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,457,324
Number of Sequences: 59808
Number of extensions: 390950
Number of successful extensions: 1116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)