Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I18
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    29   3.2  
Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm rec...    29   5.7  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 405 WHIYFWFMFTLFMHLFFYWNMTFFYFCDSTIYSFI 301
           WH Y W    L  HL+ Y  + F + C+S ++  I
Sbjct: 244 WHNYSWM---LPQHLWSYTALNFMWICNSAVHPII 275


>Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical
           protein C45B11.4 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 405 WHIYFWFMFTLFMHLFFYWNMTFFYFC 325
           WH Y W MFT  + +  +  + FF+ C
Sbjct: 208 WHTYLW-MFTTIIVIGIFIQVAFFFLC 233


>AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 33 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 411 TNWHIYFWFMFTLFMHLFFYWNMTFFYFCDSTIYSFIK 298
           T W + FW  + +F    +  ++ F  F D+  Y++I+
Sbjct: 130 TGWKLVFWVFYVIFFGFAWSASVYFCLFPDTYSYNYIR 167


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +1

Query: 175 LQITRAAEHLYSIIDGKPKEVLGTTYLRIKEIVSTVHEC 291
           L   +   + + +IDG+P +++ +T +++K+    V +C
Sbjct: 14  LAAQKGPSYKFGVIDGEPIDLINSTSVQVKDFDECVEKC 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,914,149
Number of Sequences: 27780
Number of extensions: 307898
Number of successful extensions: 1176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)