Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I18
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 812 RCKPCMLWMXXXMRLRRH 759
           RC+PC   +    RLRRH
Sbjct: 4   RCEPCNKILTSLTRLRRH 21


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 687 VGIGXRWRYLIRNRGRLWCAYRTVNFRL 604
           +GI  +WR+L++    L C+ R +N RL
Sbjct: 65  IGIN-KWRFLLQCLEDLDCSLRKLNSRL 91


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 696 LPINIMYNYPG 728
           LP+NI ++YPG
Sbjct: 612 LPLNIRWSYPG 622


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 541 QYPQQRPITEVIG 579
           +Y Q +PI+EVIG
Sbjct: 951 EYYQNKPISEVIG 963


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,593
Number of Sequences: 438
Number of extensions: 3670
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)