Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I18
         (865 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family...    33   0.19 
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    29   3.0  
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    29   3.0  
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot...    29   5.3  
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot...    29   5.3  
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot...    29   5.3  
At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocot...    28   7.0  

>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
           protein
          Length = 523

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 547 PQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGTYPNS 690
           PQQ+P  E  GS  F  LQE + D+    P P + P Q  PP    N+
Sbjct: 160 PQQQPNDESQGSPVFVKLQEMQ-DATSSPPPPESKPGQADPPDNIFNA 206


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 541 QYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGTYPNSDFYQS 705
           QYPQQ P    +   + +  +E         P PP  P    PPG+ P+  +Y +
Sbjct: 336 QYPQQPP--PQLQHPSGYNPEEPPYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNA 388


>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 607 SEIDSPVGTPQPPAIPNQV-SPPGTYPNS 690
           SE D P  TP   AIPN + S P T PNS
Sbjct: 286 SEADVPTSTPAIAAIPNTIGSNPVTDPNS 314


>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +1

Query: 544 YPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGTYPNSDFYQSTLCTIT 723
           Y Q R + E+         QES+ + PV   Q P +  +  PPG+       QS +   T
Sbjct: 227 YRQARAMLELAKKDFGNLRQESDGEEPVSLSQQPKVVKRGRPPGSGLKKQLEQSLIDRTT 286

Query: 724 RGVES 738
             + +
Sbjct: 287 SDISA 291


>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 580

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +1

Query: 544 YPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGTYPNSDFYQSTLCTIT 723
           Y Q R + E+         QES+ + PV   Q P +  +  PPG+       QS +   T
Sbjct: 228 YRQARAMLELAKKDFGNLRQESDGEEPVSLSQQPKVVKRGRPPGSGLKKQLEQSLIDRTT 287

Query: 724 RGVES 738
             + +
Sbjct: 288 SDISA 292


>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +1

Query: 544 YPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGTYPNSDFYQSTLCTIT 723
           Y Q R + E+         QES+ + PV   Q P +  +  PPG+       QS +   T
Sbjct: 227 YRQARAMLELAKKDFGNLRQESDGEEPVSLSQQPKVVKRGRPPGSGLKKQLEQSLIDRTT 286

Query: 724 RGVES 738
             + +
Sbjct: 287 SDISA 291


>At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocotyl
           protein 1 (NPH1) / phototropin identical to SP|O48963
           Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)
           (Phototropin) {Arabidopsis thaliana}, cDNA
           nonphototropic hypocotyl 1 (NPH1) GI:2832240; contains
           Pfam profiles PF00069:Protein kinase domain and
           PF00785:PAC motif
          Length = 996

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 616 DSPVGTPQPPAIPNQVSPPGTYP 684
           D+PV  P+PPA  N   P GT P
Sbjct: 37  DNPVFRPEPPAWQNLSDPRGTSP 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,502
Number of Sequences: 28952
Number of extensions: 270580
Number of successful extensions: 840
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)